RNA id: XM_043254976.1


Basic Information

Item Value
RNA id XM_043254976.1
length 6258
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122356353
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14353332 ~ 14360360 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGCACAACACACCTTAATGATGCACCCCATCCCGACGTATCCGTGGGGAGTGTGCAGACATTGGTCTCCAGACCACCACACCCCCCACAAGACCCTATTACAACTAAAAGAGTATGTTTCTACAAAAGCGGGGACCCTCAGTTCACAGGGCACCGGATGGTCATCAACAGCCGCACTTTTAAAACCTTTGATGCCCTTCTAGATGCCCTCTCCAAGAAAGTGCCTCTGCCATTTGGGGTAAGGACCATCACGACACCCAGGGGAACGCATGTTGTCCGCACCCTTAATGATGTGCAGGATGGGGGCTCTTATCTGTGCTCAGATCAGAAGAAAGTCAAGCCTTTTAACTTGGATGAGGTACATAAGAGACAGGTCCCTTGGAACACTACCAGACCTGTCAGTGCAGGACATAAAGCACGAAGGGAACTGGTCCGGCAGCTAGCAAAGAGAAATGAAGTGACCACAAGGGCAGGCAAAACATCAGACAACACAGTGGTGGTACGAACACCAAAAAGACTGACGGTGTATAAAAACAGGGATCCAAGCATGAAGCGAGTAGTTGTTCTTCATAGGAGAACAGCCCCAAGTTTTGAAGCTCTTTTGGAGTATCTTTCTCAAGTGATGCAGTTCCCAGTTGTGAAGCTTTACACAGAAGAAGGCAGAAGAGTTGAAGGACTTTCTGCCCTCATCTTGTGCTCTGGGATTGTTGTGGCAGCTGGTAACGAACCCTTCAGAACAGGAATCTACAATCTCCAAGCTCCAACTAAAGTCCATTCAAGGATATCTGAATCTTTGCATCCTACACAAACTGAGACGCCACGACaagaaaaaaagattttagctGGGACTTTTTCAAGATCAAGGAATTTCTCTTCATCTTCTGAGAGGTTCCTTGTAGAGCAGATCAATAAGTCACTAAATGGAAATCTGACAGAGCACAATAGGACAAATAATGAATCAATGGAAACCGAAGGCAGTCAGCCAGTGGGATCAGATGAGATAGAGACCTGTGGCTGTACAGATGGCATGGAGCAGAGGAATTACCCCATTATGCCTACCGAAGATGACATTGAAAAATCATTTCGGGTCAATGAAGATGGCAGCATGACAGTGGAGATGAAGGTGCATCTTACTATAAAACAAGAGGAAATGATTCACTGGACAACTACACTGAGCCGCATTTCTGTTAATAACCAGCAGAGGGCATTGTGCAATTCCAAGCCACAATCAGGTGCAAACTCATTAGACGTAACCAATGACTCAGGCAAAGAGTCGAATGGACCTCATAGCCTGGATTCTAAAGAAATCAATACACTCGCTAACAAATCTGTAGAATTCATCAAAGAAGAAAGGGAACATTATGGCAGtgatacatcatctgaaaagcCCAAGTCTATCTATAGAAGGCTACCCACTCCAGGACccagacaacaaaaaaaagaggccTCAGTCGAAAATATCAAAACTGTTTCAGAGACTGGAGTTCAGGAGAGTACAGTAGGGGCATACTCATACATGGAGCGAACTGCACAGGGAGAGCTGACGGAGGGTTACTGTGTGGTTAGTCGCAGCAGTAGCAGCAGCACAAGAACTGTGTCAAAACCTGGGAAGAGCGAAATGGGGGAGGTTAAGCAGAAACAGACCGACACTTCCTTTAGATCCTCAGGTGTTGCACAGATTCTTCAGCTCCAAAACAATGGAACAATGGGAATAACGGAGACTGTGATGCACATATATGAATCACAGGGTACGTGTGACAATTACAATGCAAATACACAGGTGTTTGTGGACAACAAGCCTGGATATCACACAAAAGCTTTGCCTCGGAGTAAGCCAGGCTCAACAGACTCAGGACCCCGTTCGTCCTGCGATGATTGCGATGTAGATCTCACTCGGCAGTCCACAAGTTCCAACTCCCAGGATGGCAGAAGATCcaatatattatcattatcatctgCATATTCAACACCTCGAAAAAAGATAAACAACAGTTCATCCATCCTTACTgatgatgaaaaacaaacattggtTGAAGGTACGTCCGAAGTGACTGAAAAGGAAAGTTTGCATCCAGCTGAAGCGATGGAACACGTCTCTGATGATAAAAGCATtgtcagtaataaaaataatacaccaAAGTCCAAAAAATCTAAGAAAAGTACTTCCTCTGAATCTAATGGATTTGTCAAAAACATAAGGGGCAGTGCTCCAGGGTCTTCAAATAGTCTCCAAATGACGTCAGATACATTAAGCCACACAGGATCAGAGAAGAAGACTAGCTCAGCAAAAAGTGACAGACGTGAACACAAATCTGtaagagacaaaaataaaaagacaaaaacatttgaaagttCTCCAAAGATTAGACATTTAAATCTCAATACTAGCAATCATAGCCAGTCAGATGAAGATCTCAAGTTAAAAGATAAAACCATCAAAGACATCTCCCACAAAGTTAACACAAATGGCCATGACTCTCGAGGGCCCAAACTAAAGAAGAATAGTTTAGACATTCAATCTCCAGCCCCAATAAAAAGACTCCAGAAACAAAGATCAATGAATGGTGTCAGATCAAAACAATCCTCTAAACAAAAACAGGAGTTGAGTGAAAGTGCGTCATTGCCCGTGCTACAATTATCCTCCTCCAGTGTAAATCAATATGTTGAAAGCTGGCTAAATAAAATTGAACCAGAATCTGTGCCCTACGATGATGAATCAAACCACCCAGAGACTGTACCAAGAGCAGTATTCCAGATAGGAAGTGACTCCACTGATGGATCTGAGATTAAAAGTGACCATGAAAAAGATAGCGTAGATGTTGAAGGCCCTTCTCTAGAAGCTAATGGTGAAGAGAGACCAACTTCTCACCCACTTGTACAAATAATGTATGAGGGAGAGCCGACTGAACCACAGATGCCAAGGGGATTTTGTAAATCAATGCCAATTTTGAGAGTACATTCTGAACAGGAGGGTCTTGTTAGAATGCACAGGTCATCTGAGAACTTGGTTCCTCCTGATCCTTCTGGGACATTACAAAGTACAGAGGTCAGAGTAAGGTCAGGCATGAAACCAGTTTTGCAACAATTGTGTTTGTCTGTTCAGTCCATCAAGCAGGCATTGAGTCCGACCCATTTAACACCTATGGAAAGGGAAAAGTCAAGTAGCCTCCCGGATTTTTCCTCTCAGGTGGCCTCTGCCTTTGGGTCTCCCTCGAGAGCTCTTCTGTCTTTCTTGTCACTGATGACTCTGAGAGATGGACTTTCAGTCCTCTACAAAGATGAATCACCAGCCAGCAACTCGAATGTCTGTCCAGAGGCCCTGCAGGTAATGCAGTCCTTGGAAAAAATATCCAATATTAAAGATGAAGATGAGCTAAGGGCCAGCTTGACCAGTCTTCAAAGTTCAACTTCATCCAAACTAAAACAAAGCTGGAGAGATTTCCAAGAGCAAAATGTCTTTGAAGATAGTCCCCCACTGTCACCAAGATTCTCAGAGCAGGAGTTTGTTGTAGAAGTAGACTTAGAAGGAGAAACAGAAGATCCGGACAAACAGTGCAGTTTTAATATAGAACAGTTACTGGATGAACTGAACATGCCTGAAGATCTTCACAGAGAGATTTCCTCTCTTGTTGAAGGAAAACAACAGTATTTTAATCAAGCAGACGTAATCAAACAAGATGACACCATCAGTGAAATCTCAggtaaagaaaaggaaaatgaagATGGCTCCTTAACTAGTAGTTTAGAGAAAGCTGCTGACATGGAAGAGGAAAAGGAGAATATTAACCAAGACAGTGACAAAACCAATGATGACATAACAAATGATCAACTGGAACCAGAATCTCAAGTTCATTCTTCTGACTCGGAAGCTATAGAAGAGGACATAGGTAATGAAGATTCTGGTGTAGCAGTGCCCATTCAATCCCCTGAGGGTAATGGTAGTGATTCAagtaaaacagacattttagaAACATCTGATAACAACCAGATGAATGCAGAGAACGTTCAAGAAAGTGTAGTGCATGAAGATTCTGaatctgaaaacaaacatgGTGAAGGAGAACGTTCTCCAACAtcagaacaaaaaataacagatgtagcttcagaagaagtttCTGAGTTCTCTGATCACCAAGACAATATatctgaaagagaaaacaatgtAACACCAGATATTATAGAAGAACGAGACACTGATGTAGAGGAGGAGGACACCGTTCAGAACATCAGGGTAACTAACGAACAATCAGATGCTTCAGAACCCGAAGACACAAATGACAAATGCTCATGTTCAGCATCAGAAACTGACTGTGTGCCATTTTCAGACAGAGAGGCAGCTGAGCTAAATGACAACAATCAGTGCAGTGCAGTTGAGAACTGTGCCAGAAAAGAAGCTGATCTTTCTGATTTTGAGGAAACGATTAGCGATGGAGGACATGAACAAGAAAACAAGTCCATCTCATCAGAATGTAAGTCTATTCACTCAGAGCCCTCAGAGACATCATCACCTTGTTGTGATACAGAGGGTGAATGTAGAGAGCAAACATTAGAATCATCCAGCCAAGAAGATGATCAGGTGGTGTCTCCAGATGTGAAAGATGAAGATCAACAAGAGGATGTGGCAGAGATTCAGGAAGGTGAGGATTCTGATCCACACTGCAACAGCAGCCCTCAATATCTTAGTAATGATGAAAACAGTATGACTCCAGAAGCTGAATATGAGAAAACACATCAAATTGAAAATGGACTTGTggaaaaatatgatattaatgaAGTGGACCATGAGACCTCTGAAGTTTGTGAACAAGTAGATCCATGTGATGAACCTGAGGTTGTGGATGAGGATGTGACAGAAACAAAGCCGAACACAAGCAATTCTGAACCCTACAAAGTCCAGACAGTAGAGGAACGTAGTCTCACCAAAGAGGACAGTTCTGCTGAAGAGTGTGATGCAGAAGAGGAAGACTACATAGATTCTCATAATAGTATGAATGATGTTACACACTCTTGTACTGATTCTAAAGATTCTGTGGAAGGGGAGTCATGTGGCAGTATGAGTACAAGTGAACACCAGTTTGAGAAAGCTGAGAGTTTAGGAATGGAGCATGGCTATCATTATTTACTACATCCAGCTGAGATCTCACAAGAGTTGCTAGACCTAATCAATTCAGCTTTGTTGTCTTCTACCCTGACTGTCACATCTGATTCAAATGGCAACCTCAGAATAGAGCCAGACAAGCACAAAATGAGGGAGATGTTTATGGCTTGCCAAAAGATAGATAATCAGTATGGTCAAAAATGTCTCCCGAGCCCAAATACATCAGATTTGTCTGATTATAGACCTGAGACATCTGACAATGGTGGGTACCAGTCTCAGGAGCTTTTTACAGAGAGTGGAGAAGACGAGACGGAGAGGTTACGTATCTTTCGAGAAATCATAAAACGAAGTTCTGAGCAGCCAAAAAGAATAAACCATGTAAAGGAGAATGGCTTGATGAAATCATCCACATGGATGACTACAAAACCCACTCCCAGTCCAAGTTTAAAAAGCAGCAGTCTAGCTTCTTTTCAGGATAATAAAAGCGCAATCCAAGACACAGTGTCCCACAGTAGATCGCAAAGTTCACTTGACGGAGACTCTGAGTCGGTACAGTGCTTGGCTTTGAAAGACAATGTGGACTATGGAGAGGGAGTGCTGATTGATAAAGGCAGGTGGCTTCTCAAGGAAAACCACCTCATTCGTAACTCTCCTCCTGCAACTATGGGTATGTATGGAAATGGAGACACCACATCAGCAGACACGGCTCAGGACAACAGAAGTGAGGATTCAGCCTACCCATACTGTGAGAACCAAGCCTCGCCTCTGGCTGTAATATCCTCTTCTGAGCTGGAGGACATGGCTAAACCCCCTACACCAAAGTGTACGTACTTCAATATGGCACATAGCAGTGACTCTGATCCTCTCTTGGATGCCCAAAGTGTCAATAATGGCAGCAGTAAAGGGAATGCTAGGAAGAACAAGGAACTTAAGGTATCTCCCATGGGTGAGTCCTCTAAAATGTGGGCAAAGAAAAATGGAAGTATGTCTTCATTCGCATCTGTTGAGTTTAAACTGCCTGATGGGAAAGTTCATCCTCAGGAGGCGTCAGGATCTGGTTCTAACAGATCTCAGAGTCAAGACAGCCGGAGAGTACAAGAGGAGGAGTCAAGGGTAGGTCTAAATCTCAGGTGTGGGCAACACTGCCCAATTCTGTAG

Function

GO: NA

KEGG:

id description
K19538 RP1; retinitis pigmentosa 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17756 lncRNA downstream 102792 14249003 ~ 14250540 (-) True G11982
TU17729 lncRNA downstream 159520 14193575 ~ 14193812 (-) True G11969
XR_006252500.1 lncRNA downstream 162223 14190476 ~ 14191109 (-) True LOC122357595
TU17726 lncRNA downstream 163734 14189196 ~ 14189598 (-) True G11966
TU17696 lncRNA downstream 211475 14139482 ~ 14141857 (-) True G11940
TU17808 lncRNA upstream 68551 14428911 ~ 14430054 (-) True G12024
TU17811 lncRNA upstream 79383 14439743 ~ 14440787 (-) True G12027
TU17812 lncRNA upstream 79383 14439743 ~ 14440787 (-) False G12027
TU17821 lncRNA upstream 96193 14456553 ~ 14459327 (-) True G12034
TU17858 lncRNA upstream 307373 14667733 ~ 14668539 (-) True G12062
XM_043256445.1 mRNA downstream 4994 14345388 ~ 14348338 (-) True LOC122357171
XM_043221572.1 mRNA downstream 10699 14274964 ~ 14342633 (-) False ctnnd2b
XM_043221593.1 mRNA downstream 10700 14274964 ~ 14342632 (-) False ctnnd2b
XM_043221582.1 mRNA downstream 10700 14274964 ~ 14342632 (-) False ctnnd2b
XM_043221561.1 mRNA downstream 10700 14274964 ~ 14342632 (-) True ctnnd2b
XM_043221280.1 mRNA upstream 10566 14370926 ~ 14379735 (-) False rgs20
XM_043221288.1 mRNA upstream 10566 14370926 ~ 14379732 (-) False rgs20
XM_043221295.1 mRNA upstream 10566 14370926 ~ 14375601 (-) False rgs20
XM_043221305.1 mRNA upstream 10566 14370926 ~ 14375556 (-) False rgs20
XM_043221314.1 mRNA upstream 10566 14370926 ~ 14375123 (-) True rgs20
XR_006247862.1 other downstream 215183 14138060 ~ 14138149 (-) True LOC122328947
TU17473 other downstream 789003 13560329 ~ 13564329 (-) False LOC122328470
TU17474 other downstream 790030 13560329 ~ 13563302 (-) False LOC122328470
TU17472 other downstream 793067 13559222 ~ 13560265 (-) False LOC122328470
TU17470 other downstream 798713 13553852 ~ 13554619 (-) False LOC122328470
TU17840 other upstream 218635 14578995 ~ 14610266 (-) True adcyap1b
unassigned_transcript_207 other upstream 512716 14873076 ~ 14874382 (-) True LOC122360578
XR_006247132.1 other upstream 762165 15122525 ~ 15127491 (-) False faim2a
XR_006247859.1 other upstream 770239 15130599 ~ 15130715 (-) True LOC122328941
TU18236 other upstream 786844 15147204 ~ 15151772 (-) False smarcd3a

Expression Profile