RNA id: XM_043255276.1


Basic Information

Item Value
RNA id XM_043255276.1
length 1115
RNA type mRNA
GC content 0.43
exon number 5
gene id sdr39u1
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17508786 ~ 17511815 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTGCGGTCGCGTTCCACTTTGTGTCAATGACGCGATAAACATACGACGCTCTCAACCTTCGCCGAGAGAAAGATGTAAAAGAAGTGGATTTCTGCAACTTGTCTGGATAAAGGGACTGTACTTTATAACCACAATGAGAGTTGTAATAGGTGGAGGATCAGGGTTTGTGGGTCGTGAGCTAACACGTTTGTTGAAAAGCAGAGGTCATGAGGTCACATTTATATCCAGGCAGCCTGGCCCAGGAAAAATAACATGGGCTGATGTAGAGTCAAGAGGCCTCCCTCCATGTGAGGGTGCTGTGAATCTAGCAGGGGAGAATATTATGAATCCTTTAAGATGGTGGAATGAAAGTTTCAAAAAGGATCTGGTCTTTAGCCGAGTAAACACAACCAGAATTCTTGCCCAAGCTATTGCCTCTTCACCAACTCCACCACATTCATGGGTGCTTGTTACAGGAGTAGGTGCTGTTTTAGGGCGTGACGGTGGCGCCATGAAAAAGATGTTGATTCCCTTCTGGCTTGGCTTGGGTGGGACGCTTGGCTCAGGACGACAGCCCTTCCCTTGGATCCATGTGTCAGACCTGGTTGGCATCATCGCCCATGCCTTGGAGCCCAAAGTAGAACCATCCACAGAACCAGATGTATTTAATGGAGTTGCGCCTGCACTGAATACCAATTTTGAATTCACTAAGGAATTGGGCAGGACTATAAAAAGACCCACTATCTTCCCTGTGCCAGGCTTTTTCTTGGATGTCTTCCTCGGTTCTGAGCGAGCTGTGATCCTTACACAAGGCCAGAAAGTGGTGCCCAAGAAAACTCTTGAGTCTGGCTTTGAGTTTCAGTACCCAGATCTTACCTCtgctttaaaagaaattgtTAGAAATTAGTCATCAgtcaaaacagagaaaagaccTGAagagatttagatttttttaaatattattttaaattaagcaaatggaaaaataaaacttgcTTGTACTTGCTTGACTTAATGTAGATATTCAGAAATACACATTGTTCCTTCATCTGTTCCTCATTAAGAATTACTCATATCTGTCTGTGTGAACAAAATGAGCACTTCAttggtaaataaatgtttatatgaaaATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19305 lncRNA upstream 28292 17480223 ~ 17480494 (+) True G13076
TU19304 lncRNA upstream 28684 17479724 ~ 17480102 (+) True G13075
TU19206 lncRNA upstream 121238 17386062 ~ 17387548 (+) True G13007
TU19186 lncRNA upstream 222956 17281260 ~ 17285830 (+) True G12995
TU19164 lncRNA upstream 235624 17272654 ~ 17273162 (+) True G12977
TU19267 lncRNA downstream 15362 17527177 ~ 17529390 (+) True G13049
TU19266 lncRNA downstream 17186 17529001 ~ 17529390 (+) False G13049
XR_006252552.1 lncRNA downstream 98335 17610150 ~ 17612100 (+) True LOC122357958
TU19350 lncRNA downstream 164257 17676072 ~ 17678382 (+) True G13112
TU19359 lncRNA downstream 187774 17699589 ~ 17699825 (+) True G13121
XM_043221436.1 mRNA upstream 2664 17501343 ~ 17506122 (+) True ltb4r2b
XM_043223790.1 mRNA upstream 22932 17480704 ~ 17485854 (+) True ftr66
XM_043220234.1 mRNA upstream 29846 17473538 ~ 17478940 (+) True myadmb
XM_043220242.1 mRNA upstream 29846 17473587 ~ 17478940 (+) False myadmb
XM_043262116.1 mRNA upstream 139684 17362245 ~ 17369102 (+) True sppl2
XM_043253119.1 mRNA downstream 6997 17518812 ~ 17524769 (+) True parp2
XM_043253189.1 mRNA downstream 24698 17536513 ~ 17537813 (+) True cbln13
XM_043257641.1 mRNA downstream 119549 17631364 ~ 17652724 (+) True LOC122357951
XM_043258476.1 mRNA downstream 170689 17682504 ~ 17687392 (+) False apol1
XM_043258470.1 mRNA downstream 170699 17682514 ~ 17687392 (+) False apol1
XR_006252905.1 other upstream 140925 17362245 ~ 17367861 (+) False sppl2
TU18915 other upstream 471489 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 1239989 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2725809 14776322 ~ 14782977 (+) False ackr4a
TU19352 other downstream 55026 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 95437 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 267524 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 272364 17784179 ~ 17816764 (+) True G13137
XR_006247815.1 other downstream 2904388 20416203 ~ 20429345 (+) False crlf1a

Expression Profile