RNA id: XM_043255426.1


Basic Information

Item Value
RNA id XM_043255426.1
length 2642
RNA type mRNA
GC content 0.48
exon number 4
gene id efna2a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12204405 ~ 12256887 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGATGATAACTGTCGCGCACGAATCAGATTCAGCACGAACCGATGAATTATAAAGAAGTGCGCTTTAGACGACTTGCAAAGCTTATGCGATTGAGTCGATCGAAGCTAAACATCCAGCTGATACGCAAAGCTGATCCAAAGAGTGAGCAAAGGCAGAGATGCCAAAGGCAGAATGGGGCAAAATCGCCTTTGTTCCTCCAGGACAGAGCCGAGTCGTGCAAACGGCTTGAGATGTGCGTAGGATATCTGCCCATCAACCGGAGCGAGCCAAAAACGACACGATCCCGCCAACAACTAACGCACAACTTGTGCGAATAAGATGGAGCGCTGAGGAAACGCGAATCGAGAACGGCGTGCGTTACAGACGGGGGATGTGTTTCGCGTGTGCTTCTCGTGCAGACCACATGGGGTAGAGGTATCTGGAAGTTGCAGCGCCGCAAACGGGGAGCATCACTGTAGGAGGCTCGAGACGCGCGTCGCACCGTCCCGCGTTTAGATGATGGACGGATCTCTGACAGAGCGCTAGAAAACCACCGCGGACCGCACCGGAGACCTTTCGCAGCTTAAGAAACAATTTGTAATGGATTTTCCCGTTAAAAAAAGAACACCGAACGCGTGCAGTTTTACGAAGTAACGCACAGAAAGTAATGCTGCTCGTTCTCTCGGGAGGAATGATAATCGCTCTGGATTACAAGCCTTGTTGTGATGTTCAAAACCGCGTACGTGCATGCGCTCAAACAAGCGGGTATTTGAAAAGTTGTCACTGAAATAAACGGCCGTGAATTTTCGTTTGGAGGCGAGGACTGGTATAACAACTCAAATGGAGTTGCCGCTGGTGGTTTTTACGGTAGTGTGTTGGGTCTCTGTATGGTCGGACGACCGGATCATCTCAGACAGACACGCGGTCTACTGGAACAGTTCAAACTCCAGGTTCTGGCAGGGTGAATATACGGTTGCGGTGAGCATCAATGACTATCTGGACGTGTACTGTCCGTATTACGAGACGCCCCAGCCTCACAGTCGCATGGAGCGCTACATCCTTTTCATGGTCAATCATGATGGGTACCTCACCTGTGAGCACCGCATGAGGGGCTTCAAACGATGGGAGTGTAACCGGCCCCAGAGTCCTGATGGACCACTGCGCTTCTCTGAGAAGTTTCAGCTCTTCACCCCCTTCTCGCTTGGTTTTGAGTTCCGGCCTGGACACGAGTACTATTATATATCCTCTCCTCATCCTAACCACGCTGGCAAGCCGTGTTTAAAGTTGAAGGTGTACGTGAAGCCTACAAatggTTCGGGCTACGAGTCTCCAGAGCCGTTCCTGACTGATCAGAGCCAGCGCTGCAGGGCAGACGGCCCGTGCCTAGctgtgctgctgttgctgctggcCTTTCTGCTGGCCCGCGTTTAAGAAGCCCCCGCCGCTGCCCAGACTGCCTACCGCTCTCCCTCCATCCATACTCCCTCAGGGAAGCCCTCTCATCCAGACCCCCGGCTGCAGTCGGATTCACGCGTCTTCTTTCTTACCGAACGAGCTCCTCGCTGCTGATCCGAGGACGAGAGACGTTCCCTCTGCTTTAGCGGCTGATGTAAAGCTGAACACCTGGAGTCCGTCGTGGAATGTGACCTTTTATATATGCTGTCATGTAATCGAGGCTTGTATTCATGTGCCATTTAGTCACGTTTCAGGGCGTCGCggtttacaaaagatttcagaCACTTATTTGGATAGCTATTAATGCCCCCCCCCACATCGTCTTACACCATACTCAGCCCAGAAGTAAAGGGGATTTTCTCCTCCTAATAATAACAAGTGACACCAAAGGACTCTCTTCagagatttagttttatttttcatttgaagggagagaagaaatgtgttttgtggtAGCCAGCAGCTAGGGACTTAGTGTTAGACATTCACATGCATGTGAAACACtgtgaaacagagaaaaactgatCTTCTTACAATagtaacaatatatttttcttagcGAAAACGAAACAAACGTAGACCTTCTAGCCACTCTTCTGGTGTAAGGCTCAGCTGGTGGAGTTTGGATCAGACGCAGCCAAATGTCAGTGCCCTCGCCTCAAAACTGTGCTCGTCTGCTGTGGTTGGGACAAGGACTTCGAATCTCTGAGATCGCTTTGGTGCAAACCCAAATGCCGCTTAATAAAACTCTGCATTGGTTTTTCTTTCTAGCTCTGTGGGACAAGCAAGCAATGGAAACGCAGTGAGGATCTAGCCACTTTTAATTCACAGACGCACACACCGCGGGCATGGCCGAAAAGGAAATGGATTTTTTGTATTctatttcatgttatttttgtagcatttaaaagcaacatCAATTATTCATGCGATATGAGGAACGGTTTTAGCGTCTTGAGTGGCGATACAGTGTGTGAGTCAGCAGTCGGACGTATTCAGAAAGGCCCACTCTCTCACTCTTACTGTTGTTATTGTGGTCTTGTCAAACTGTATTCAgtatttaaagagacagaaagCATTTCTTTCCATCTGATTTGATTGTGTCCTCTTTTTCATGTGACGTTTTGTACAGCCAACATGTTCTGTCGAACTGAAGAAACAtgctgaaatggaaaaataaaaaataaagcgttTTTGTCTACGAGA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0007399 nervous system development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16942 lncRNA upstream 103279 12100875 ~ 12101126 (+) True G11419
TU16629 lncRNA upstream 585542 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 590839 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA upstream 593318 11610475 ~ 11611087 (+) False LOC122328936
TU16616 lncRNA upstream 702819 11500389 ~ 11501586 (+) False mast3a
TU17037 lncRNA downstream 80780 12337667 ~ 12339049 (+) True G11505
TU17175 lncRNA downstream 288466 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 357488 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 359108 12615995 ~ 12621414 (+) True G11595
XR_006252588.1 lncRNA downstream 366942 12623829 ~ 12624952 (+) False LOC122358236
XM_043219545.1 mRNA upstream 3260 12191229 ~ 12201145 (+) True ptbp1a
XM_043223854.1 mRNA upstream 14469 12176228 ~ 12189936 (+) True palm1b
XM_043223860.1 mRNA upstream 14469 12176229 ~ 12189936 (+) False palm1b
XM_043223867.1 mRNA upstream 14469 12182296 ~ 12189936 (+) False palm1b
XM_043254130.1 mRNA upstream 35488 12156094 ~ 12168917 (+) True plppr3a
XM_043262125.1 mRNA downstream 14000 12270887 ~ 12278067 (+) False hectd3
XM_043262126.1 mRNA downstream 14000 12270887 ~ 12278067 (+) False hectd3
XM_043262124.1 mRNA downstream 14001 12270888 ~ 12278067 (+) True hectd3
XM_043219222.1 mRNA downstream 21845 12278732 ~ 12281207 (+) True rps8a
XM_043220644.1 mRNA downstream 76900 12333787 ~ 12336926 (+) True lrrc42
XR_006252734.1 other upstream 266815 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 698675 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 704327 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 705468 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 863294 11339863 ~ 11341111 (+) False mrpl34
XR_006247874.1 other downstream 23024 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 23703 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 24485 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 366936 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 611096 12867983 ~ 12873145 (+) False rnf152

Expression Profile