RNA id: XM_043255742.1


Basic Information

Item Value
RNA id XM_043255742.1
length 2831
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122356725
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23765958 ~ 23770492 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCTGTTAGCAAGGATGTGGTCACAGGCAAACCTCTGAAAACAGAAGTGCTACTAACTACAGTTTTCTTGATAGCATTTAAAGGAAAGTATCTCCTATGAGACACATCCTGATTTACTTCATGAGTGCATCACCACGGAAAAGTACAACCAGTTTCACTCTAGGAGAAATGACACTTTGAAGTCATCGGCGAAGTTTCACTATGATGCAGAACTGCTCAACTGAAGATGTGGACTCTTTGACTCGCACGCTGGACTTGGTGATTTACGTGCCCGTCCTGGTGTTCGGCTTAGCGTTAAACGTCGCTGCACTTGTGGTCTTCTGTCTGCTGCTCAGAAAATGGACAGAGTCCTCCATCTACATGACCAACCTGGCTCTGATGGacctgctgttgctgctgcagCTGCCCTTCAAAATGCACGCGGCACACCACGAGTGGGCAGAAGACAAGAAGATCTTTTGCTCCTTCCTGGAAAGTCTTTACTTTGTAGCTATGTACGGCAGCATCTACACCATCGTGTGCATAGCCGTAGACAGGTACATCGCAATAAACCACCCGTTCCGAGCCAAGCAGGTGCGTTCGAAAAAAAACGCCTTGATCGTTTGCGTTTGCATTTGGGTGTTCGTTATGGCAGCGACTTCACCGATCTACACCTTCCGGGAAGAGAAGAAGGGGGATTTCAACTGTTTCCATCGCTTTTCTGAAAAAGGTTGGAGCACTGAAATAATTGTGTGCCTGGAGGTCATTGGTTTCCTGTTGCCCGCCACAGTCCTGGTGACCTGTTCTATTAAGAGCGTGCGTACTCTCAAAGCCTCGAAGGACAGCGACCGGAAGAGGCAAGCCGGCGTGAGAATCATCTACAGCAGCCTAGCGGCCTTCCTAGTGCCCTTCACCCCCTGCCACCTGGCCATATTCCTGCAGTATCTTGTCCATAAAGCCATTATTTCAGACTgcaaacagaaacagaacatCGCCCTGTTCATCCAGGTGTCAATAAACATCGCAAACGTGACCTGCTGCTTGGACGCGTTGTGTTACTATTTCATTGCAAAGGAAGTCCGATCCACCAAGGAGACGCTCAGACTGTCCATCAGCAGAGCGAGAACCACCAGCTCCTCAGATGTCTGAGGTCAATTCAGTTTGTTGCTAGCGAAATTTTGCAGTCGAAAAAAAGCCCGTGGTCAACGTGCGAGGCTCACTAAAAAGTACCATTCAAGCCCAGCTGCTTTCTGTTGGCCAGCTCAGCAAATCCACAAGCCAACTTGAACCCACTGCAAAATCCAGAAATCTTCAAGCAATCGGAAGCAAGTGCACAGGTGCCGCGTACACTGTTACAATGTAGCGTTGCGTTGAATGCAACATTGCTACCGTGCAGaggaaaatgtacatttctgagGCTTGTTCATTTCCTTTTTGGTGAGGGCTTTTTACATTTGCCAAAAATAGAACTCTTTatcttcaaaacaaacaaagcgaGCTCAGACCAgattaaaaaagtaacacaaaagCAACGCATTAACAACACAATTAGGTACTTTTTAAGGAGCAACACAATACAGAATgcgttacttttaaaagtaacttcgCACACCACTGATTGTATTCTGTAGAAGAACtcacacaggtttgaaacgacgTGACGGTGAGAAAATTGTGACaggtattcattttttttggtggACTATACGGAACAGAACTGCACAATCCCAAAACTGGATTACCCGAATCTCATAACCTCAAATTTCATTCGCAAAATGGACGTCTAAATTCCATAAGACTGTCTATATGTTTATAGATAGCTGTCCTTCCTTAAAACCACATCCTTTAAGCTTCACCCTTCAAAGCCATGAATGCAAACACCCACAGAATACGATAACATCTGAGAGCATTTCTGGCTGGTTAAAATGGCGGGCTGCTCCCCGAcccatttttgctgtttttgagtTTAGGGCTATAAGAGAGACGGGTGATTTCTCTGTGATTTCTCAGGACTCCTTACGTTTGAAAAACGTACTATTAGAGTGTTGCGggaataaagtgtttttgtagGCCAAAACCTGAAGTCAgtggttttttttggttaattgTCCTGAAGTCAAGTTTTTGGTTAAATATGTCTTTGGTTAACACAAACTCAAGATATTTCTACGCTATTAAAGTGCATCGGCAAGACACCCGGAActtcttaaatatttaacttttccTGATAAAGGCGGTTGGCTAAGAGAACCGGGATATTAAAGTTAAACTCTTCTACTCACTAGTCTACTTTTACAGGTCCACAGGAAaggaaaatgtcttttaataaagaataaaagagTTATCTGAAGTATCATGCGACAGTGGTGTAGTTGTTTGataatgctgaataaaagaatGTAATGATGATAAGCTTTTTTTGGTCACAGaacatatttttcacattattcCGCTAGTCAATGGAATCTGGTTTTTATTGAGGAAACCAAGGCCTACAAAAACGTCATCACTGCAGCAGttcatttaaagttatttttagtcAAAATTGTGTCACACTTAAGACCGATTCATGATCTTGTGATAAGGATTTTGCCCAAAGATTCTGTATTTGTCTTATCTCATGCTTGTACTGTCATTATGAGAAACCTGAGGTCTTCATGCTCACACGCGATGGTCTTCTGACAAACCTTTCTGAAACCTTTACAATGACTCATAAATGTTTCTGATGTAACATTGGCTATGGCATTACTTTCTTCACAATCACCTGTCTTGTTCAGAGTTTTTCCAGTATGTTGACATATCTGTGTAGACTTTTCTCATCTGTTTGGTACTGGAtgtcaataaaacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22036 lncRNA upstream 3133 23719642 ~ 23762825 (+) True G14859
TU22056 lncRNA upstream 19405 23744871 ~ 23746553 (+) True G14872
TU22034 lncRNA upstream 25461 23719642 ~ 23740497 (+) False G14859
TU22037 lncRNA upstream 43211 23722266 ~ 23722747 (+) True G14860
TU21994 lncRNA upstream 74098 23690422 ~ 23691860 (+) True G14841
TU22074 lncRNA downstream 6611 23777103 ~ 23780120 (+) True G14889
TU22043 lncRNA downstream 20770 23791262 ~ 23795903 (+) True G14863
TU22081 lncRNA downstream 33292 23803784 ~ 23804629 (+) True G14896
TU22211 lncRNA downstream 108686 23879178 ~ 23879604 (+) True G14978
TU22212 lncRNA downstream 113270 23883762 ~ 23884416 (+) True G14979
XM_043221844.1 mRNA upstream 50721 23703501 ~ 23715237 (+) True pitrm1
XM_043224637.1 mRNA upstream 63694 23698257 ~ 23702264 (+) True klf6b
XM_043253002.1 mRNA upstream 128528 23634222 ~ 23637430 (+) True LOC122354999
XM_043252978.1 mRNA upstream 135585 23625007 ~ 23630373 (+) True LOC122354760
XM_043252986.1 mRNA upstream 141092 23585061 ~ 23624866 (+) False mbnl1
XM_043224831.1 mRNA downstream 2388 23772880 ~ 23775183 (+) True lpar5a
XM_043224868.1 mRNA downstream 13232 23783724 ~ 23786255 (+) True hes6
XM_043217674.1 mRNA downstream 149739 23920231 ~ 23925631 (+) True LOC122323665
XM_043217662.1 mRNA downstream 159139 23929631 ~ 23931889 (+) True LOC122323657
XM_043217689.1 mRNA downstream 165429 23935921 ~ 23938953 (+) False LOC122323670
unassigned_transcript_256 other upstream 28836 23737051 ~ 23737122 (+) True trnaw-cca_1
TU21973 other upstream 217984 23545106 ~ 23547974 (+) True G14831
TU21525 other upstream 1070628 22691251 ~ 22695330 (+) True fcer1gl
unassigned_transcript_253 other upstream 1837139 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 1904516 21860891 ~ 21861442 (+) True G14471
XR_006247041.1 other downstream 165429 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 313346 24083838 ~ 24088441 (+) False LOC122327442
TU22338 other downstream 722946 24493438 ~ 24499685 (+) True G15065
unassigned_transcript_258 other downstream 1270937 25041429 ~ 25041511 (+) True trnal-uaa
unassigned_transcript_259 other downstream 1271491 25041983 ~ 25042065 (+) True trnal-uaa_1

Expression Profile