RNA id: XM_043255893.1


Basic Information

Item Value
RNA id XM_043255893.1
length 4003
RNA type mRNA
GC content 0.49
exon number 16
gene id epc1b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21131009 ~ 21145290 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCCTGTGGCAGTCTCGGACTGTCCCCGGGGTCTGCTTACAGCCTTAATCTGACGCAAATAACTCCTTCATTTCCCTGCCGGATCACTTAACGGGGTTGCGTTGTCTTCATTTAACCGAGGAGATCCTCTAATCGCTGTGTCGAACGGAAAGCaaaggcgagagagagagagggagggagagagagagagagacagtatGTCTGACGACTGTGCCGTTTGTTTGCCAAACACCACCTTGATGCGTTACACAGTTACGCCGTCTGAAACACCGAAATGTGGCAAATCCAGGACAGACCCGCGGAGATCTCTGGATCTAGGGCTGggaTGGACGATGCCAGACGGATTGTTACCCCTCTGGATGGTCAGACGGGTACGGCGGTGTGGGTCTTCTGGGAGTGGAGGAACACCATCTCCAGCGGGCCATCTCTGCTCAGCAGGTGTACGGGGAGAAGAGGGACAACATGGTGATTCCTGTCCCAGAGGCTGAGAGCAACATCGCCTACTATGAGTCCCTCTACCCGGGGGACTTCAGGATGCCCAAACAGCTCATTCACATACAGCCGTTCAGTCTGGACACCGAACAGCCAGATTATGACCTGGACTCTGAAGACGAGACGTTTGTAAATAAACTGAAGAAAAAGATGGACGTGGGAGCCCTGCAGTTTGAAGAAATGATCGACCGGCTGGAGAAAGGCAGCGGACAGCAGatgcttttatccaaagtgacttgcGTTGCATTGAAGcCGGTGTCTCTGCAGGAGGCCAAACTCTTGTTAAAGGAGGATGATGAGCTCATAAAGGAGGTGTATGAGTACTGGAGCAGGAAGAGGAAAGCATGTCAGAGCGGCTCTCTTATTCCTGTCGTCAAACAGGAGAAGCGTGACGGCTCCAGCACCAATGACCCATATGTGGCCTTCAGGCGCAGGACGGAGAAGATGCAGACACGAAAGAATCGCAAGAATGACGAAGCTTCTTATGAAAAGATGCTGAAGCTGCGTAGGGACCTGAGCCGAGCCGTCACAATCTTAGAGATGATCAAGAGACGAGAGAAGAGCAAACGAGAGCTGCTGCACCTCACACTGGAGATTGTAGAGAAGAGgaACAGCATGGCTGATTTCGGAGGTGAGGTGATGGCAGAGGTTTTGGCTCAGAGAGCTCTGGAGAAACCAGTCATCCCTCTGATCCCAATCACCAACAGCAACCAGTACAGACACACAGAGCATGACCGGGACTATAAGATTaagATGGATAAACCAGAGGTTGTGCGGCAGAAACGGAAGTATGAGAAGAAGCCCAAGCCATTGCCATTGGCAGGCTCCGCTCATTCAGGCCCGGCAGTCTTTAACACTAAAGACCTTAATCAGTATGACTTTCCCAGCTCAGATGATGAGCCATACTCGCAGATGTTCTCTGGCTCTTCAGAGGTTGAGGAGGAGAATGATCCAGACGGTGTGTTTGGGTTCAGGAGGAGAACAGGCTGTCAATATCATGCTgCACGTTCAGGACCTGTGAGCGGTTGGCCCTGGTCAGACCCTGTTGAGGGCGGGTTAACAGATGTGCGATATCGCTATTCTCTCACCACGCTCACGGTGCCGCGACGATGCCTGGGGTTGGCACGCCGACGAGTGGGCAGAGGGGGCAGGGTTTTGTTGGACAGAGCCTACTCTGAATGGGATACTGTGTATCATGGGCTGGACCCGGATTCCCCCACATTCCCATCATTGTCTCCCACCCAGCAGCCCAGCACAGATACCTCACACACCAGCACAGATACCTCTGCCCCCTCCTCCACCTCACCAGACCTCACACAAATCCTTCTCAATATCAAAGCCTGTCGCTGGAGGCATTTCAAGCCTCGGACGGCACCGCCAGATGACCCCGACAATCCAGAGCACTGGTCTACACGGAGACCCCGCTGCGGCTTCCTCATCCGCCCTATCAGCACGCTTCAGACACAGAGAGGCCCCACCTCCTCCGCCAAGCCACGGGTCCCTCCACCCACAACCGCTTTCACCGCTGAGGAGTACCAGCAACACCAGGAGCATCTGGCACTGATGCAGAAGCAGCAGCTTGAACAGGTCCAGCTACAGCAGCAGGCTGGCAGCACAGCCATCACTAACAACCCCCAGAGTCTGGTGTCTAAGACGATAGATGCTGCCAGTGCTCAGTTTGCTGCCTCTGCACTAGTGACTCCTGACCAGCTGATGGCGCTCAAGAGTAAAGAGGAGGGAGTTGGTGTCAATGGAGTAGTCTCAGCCTCAGGCGTCTATAAAGGCTTACATCACACAAGCTCCGCAGTGTCGTCCATCCTTCCGTCTGCCGGCCCTACCTCCACCTCATCCCCCTCCCCAGCAGCCGCCTCCACCACCACTAACAACGGAACCTCCTCTGCCAATCACCACGTGGGCACGGCCGGCCCCGCCCCTGGTCAAGCGCTGATGGGCGGGGCCGTGAGAGTGAGCGTCCCCTCACCAGCAGGCACCTTGAGTGTGCGGCAGCTGCAGCGTCAGCTCACTGTTCCCGCCTCTGCCCTAAAACTCGCTGCCAATGCCAACAGACCCATCCCAAAGGTCACCGCAGGGGCAACTACCCTCGACATGGGGCCCAGGGAAAATCACGATCAAGAGAAACCTCCGTTAAACAGTCTAACAGACAACACAGTTGCCATGGAGGTGACGTAGCCCCGCCCCCTCAAGCGTTCACACACCTCCGCTCAATCGAGGCGTCTCCTTTAGGTGCTATGCATCGTAGCGACGCTGTTTCCGTGGCAGCCGTTGGGACTTAATTGCAATGctcatctttttttgtttttgtctttttccaaaATTTTGTTACTGTTAAGATATCAACATctgtaaattatgaaatatggaaaatattctatgtacatacatatttgtAATACACCCCCTTGTATATAACATTACTTGAATACAGAAATTGttcatttgtgatgttttgcacttgggaaaaaaaatctgaaaaaaaccTGCGATTTtcgtagtgtgtgtgtgtgtgcagtttgtgtgtgtcagagatTGTGAATGTTCAAGTGTTGTGAGACTGTATCTGAATGTATGTGTCACATGCATGGTGCAAAACCTGctgttttatctatttattgtgaggtgtttacagttttttgttctcccccttttttttttttttttttttgtttttttaatacactgtaACCTCCTGGGTTtctgtgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagctaaAGCAGTTGTATGTGAACATCTCTTGTTGGAAAAAAGCAGCAgggttctctctttctcttttctctatctctctctttctctatctatctcatgGCTGCTCCCCACTCCACTCAAGcactattgtttttttggttttttttaaatcaatgctgCTTTTTGTATGATTCTTTGTatgagtcttttttttgttctggaaTCTGAGAGGCCCTTTTTCATTTGGGGTTTGTgaaacttaaatgggtttatttttattacctcTGTTTTTGATGACTGATTGTAAGTCCCCTGTGTTAAGGAACGAGTCTGTTATTTGTGTGTAACAGTAGTTCATAAGGGAGAGGACTACAGTGACATCTCAGTATGTttctttatcatcatcatcatcatcatcattccACTTTATATGAAAACAAGGAAAACGAACAAAAAAGGGACGTTTTGTTTCCTGTAAGACTTCATGGTGGCACCCGTCCTGTGGGGCCAGCATGAGCTCTCTTCTGTGAAGAGGACGGTACCTCACAAGGCTACTCGTAGTTGTTGTTTGTATGTACCACAATCTGAATGCCCGTTCCAATGGCATCATCTATCTTTGAGGTGTTTTTTTAGTCCCACCTGGaagaatgaataattaaaaaaaaaaaaaaaaaaaaaacttatgacaaatgacaaaaaatgtttaataaaccCAGGGCATTAAGTGTTTGACCAGCA

Function

GO:

id name namespace
GO:0032777 Piccolo NuA4 histone acetyltransferase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20610 lncRNA upstream 164781 20961693 ~ 20966228 (+) True G13976
TU20620 lncRNA upstream 173873 20955935 ~ 20957136 (+) True G13980
TU20595 lncRNA upstream 184743 20899564 ~ 20946266 (+) True G13964
TU20511 lncRNA upstream 513349 20616158 ~ 20617660 (+) True G13909
TU20456 lncRNA upstream 535916 20591718 ~ 20595093 (+) True G13863
TU20640 lncRNA downstream 2890 21148180 ~ 21148512 (+) True G13992
TU20641 lncRNA downstream 3931 21149221 ~ 21150007 (+) True G13993
TU20642 lncRNA downstream 5368 21150658 ~ 21151136 (+) True G13994
TU20644 lncRNA downstream 6813 21152103 ~ 21153782 (+) True G13995
TU20627 lncRNA downstream 20798 21166088 ~ 21168887 (+) True G13983
XM_043255904.1 mRNA upstream 680 21123039 ~ 21130329 (+) True LOC122356829
XM_043255915.1 mRNA upstream 8255 21116469 ~ 21122754 (+) False itgb1b.2
XM_043255911.1 mRNA upstream 8255 21116470 ~ 21122754 (+) True itgb1b.2
XM_043259199.1 mRNA upstream 15010 21099685 ~ 21115999 (+) True LOC122359068
XM_043259209.1 mRNA upstream 15010 21099687 ~ 21115999 (+) False LOC122359068
XM_043260565.1 mRNA downstream 39919 21185209 ~ 21204873 (+) True arhgap12a
XM_043218333.1 mRNA downstream 82033 21227323 ~ 21246000 (+) False nlrb5
XM_043218330.1 mRNA downstream 83349 21228639 ~ 21246000 (+) True nlrb5
XM_043218349.1 mRNA downstream 83349 21228639 ~ 21246000 (+) False nlrb5
XM_043218341.1 mRNA downstream 83349 21228639 ~ 21246000 (+) False nlrb5
TU20478 other upstream 626786 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 645791 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 658393 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 701664 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 3314245 17784179 ~ 17816764 (+) True G13137
TU20649 other downstream 18652 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 19007 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 162117 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 192392 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 192392 21337682 ~ 21361708 (+) False G14211

Expression Profile