RNA id: XM_043255904.1


Basic Information

Item Value
RNA id XM_043255904.1
length 3065
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC122356829
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21123039 ~ 21130329 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTTGGTGTGCGAGGTGTGAGACTGAACTGCTGTACAAGACCTGCACtcacttcacacacactcactcacacacacacttaatagAAACACGgttattttcttttctatgcTGTATCAGAAACAATCTTCATATGCCTGCAGGACTGTTAAGGAATACTGTAACCTGGAGTGTAACTCAAGACAGCAGGAAAAGTTGAgcatataaacatttacttaataaacacacaattcTAGGAAGAGCCTTAGGAGCATGTGTTAAGATGGATATGAAGGTGTTATTAATATCAGCTCTACTAGGATTTGTCTCTCATGTAAGATCAAAAACAGATGGCAATATATGTATTTCTACAAATGCCAAAACATGTGGAGAGTGTATTCAGATCGGGCCACAGTGTGCGTGGTGCAAAGATCCGGATTTCAAACCTTCACGGTGTGATGACAGAGATTCTCTGGAAAAGGCAGGCTGCACTCCACTCGGCATAGAAAACCCTCGAGGAACGGTCACCGTCAACAAGAACAAACCCGTCACGAACCGTAAAGTCGACGGAGGACAGATTCTGAATGAGATCACTCAGATCCAGCCACAGAAACTCACCCTGAACCTCCGATCTGGTGAATCACAGAAGTTTACTCTCAAGTTCAAGAGGGCAGAAGATTATCCTATCGATCTGTACTTTCTGATGGATCTTAGTGACTCCATGCGAAGTAATcttgaaaatgtcaaaaacctGGGAACCGAACTTGCCAAGGCGATGCAGCACATCACGAAAGACCTGCGGATAGGGTTTGGTTCATTCTTGGAGAAACTAGTCATGCCTTACATTTTGATGACACCAAAATATCTGAAGAACCCATGTTTTCCAAATGATTGCTCAGCGCCCTTCAGCTACAAAAATGTTCTGAACTTGACCGACGACGGTGCATTGTTTTCACAAGAGGTTAGCAAGCAGAAAACTTCTGGAAACCTGGACTCTCCAGAGGCAGGATTTGATGCAATCATGCAGGCTGCTGTCTGCACGGAAGTGATCGGCTGGAGGAATGTGACTCGTCTCCTTGTGTTCTCCACGGATGCTGGATTCCATTTTGCTGGAGATGGAAAACTGGGTGGCATTGTTCGTCCAAATGATGGGAGATGCCACCTGGATAATAATATGTACACCATGAGCAACTACTTTGACTACCCCTCCATCTCTCAGCTGGTAGACACACTGAGTGACAACAACATTCAGACCATCTTTGCTGTGACACAACAATTCAGAGATCTTTATCAGgaGCTTTCTGCTCTAATCCCTAAATCAGCAGTGGGGACACTGTCTACCAATTCTTCCAATGTCATCCAGCTCATCATTGATGCATATAATTCTTTGTCCTCAGAGGTCATTCTGGAGAACAGCAAGTTACCTGCTGGTGTGTCCATCTCCTACATCTCCCACTGCAAGAATGGAGTGAGCGAGAAAGGAGAAAATGGGAGAAAGTGCTCCAACATCTCCATTGGGGATGAGGTGGAGTTTGATATAGAAATTACAGCCAAGGGCTGTCCATCTAAAGATAAATCAGAGACTATAAGGATCAACCCGCTGGGCTTCAGCGAGAAGGTGGAAATTGTTCTCAACTTTGTCTGTGAATGTGAGTGTCGAAAAGACAGAATCCTAAACAGTCCGGAGTGTAGCGGCGGCCATGGCACTCTGGAGTGTGGAGTATGCAGGTGTAATGAAGGCCGGTTAGGCAGATTATGCGAGTGCAGTCAAGATGAGTTCCTGACAGATGATCTGGACGCTAACTGCCGCATGAATAATGGGACGGACATCTGCAGCAACAATGGAGAATGTGTCTGTGGAACGTGTGAGTGCAAGAAAAGAGAAAACCCAGAGGAGATATACAGCGGAAAGTTCTGTGAGTGCGACAACTTCAGCTGTGACCGCTCCAACAACAAGCTCTGTGGAGGTCATGGTCGATGTGAGTGCAAAAAGTGTATCTGTGATGCTAACTATAAAGGAAGTGCTTGCGAATGCCCGTTGAACACCTCCACCTGTCTGACCAGTAACGAACTGATCTGTAACGGACGGGGCATTTGCGAGTGCGGCGTGTGTAAATGTACCGACAAAAATTATGAGGGTCCATACTGTGAAATCTGCCCAACCTGCTCCAGAATTTGCAATCAACACAAGGACTGTGTTGAGTGCCTACGATTTGGCAAGGAACGTACATGTCAGAAAGATTGCAAATCCTTCAATATTACATCAGTGAAGACTAAGGAGGAGCTTTATTATCTGAAAAACCAGCCCATCAATCAATGCAAAGAGCGTGACGCTGACGACTGCTGGTTCTACTTTACCTACACTACCAAAAGCGATGACAGCATTGACGTCATTGTGGCTGAGAAAAaggAATGTCCCTCTGGCCCTGACATCATTCCCATCGTAGCGGGTGTGGTCGCCGGAATCGTTCTGATTGGTTTAGCACTTCTGCTCATCTGGAAGCTGCTCATGATTATTCATGACCGCAGAGAGTTCGCCAAGTTCGAGAAAGAGAAGATGAATGCCAAATGGGACACAGGTGACAACCCCATCTATAGAAGTGCTGTGACAACTGTGGTGAACCCCAAATATGAGGGAAAGTGATTGCATCTTCAGGATGGCTTGCAGCAGTGGACCTCAGCTAGTCTTTGCTTCATCGTCCGGATTTTACATTGGTGACCTGATACCGTATcataaactacatttaatttGGGACAAACTGTGACTTCAGACAAAAACACCTACTTGGATATCAACAGCAATTTTATCGTCCGTTTCAAATtttgactatttatttttttaggtttttcatCCATTATCctgtcaaatgcatttttggatCCAAACCTTAGAGTTGATTAGTTTCCATGTgcttaattatattgtttatattttgtaatgtttatatgtaaatatgaaacTCCTCATTTCCTATGAGATTATGGTTTCCCAGAGCACaagaagtcaaaacaaaatTTACCAacgattattattttttaatttactttctATAAAGCCAATAAAACAGTCTTTCTGTTATTCTTAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20610 lncRNA upstream 156811 20961693 ~ 20966228 (+) True G13976
TU20620 lncRNA upstream 165903 20955935 ~ 20957136 (+) True G13980
TU20595 lncRNA upstream 176773 20899564 ~ 20946266 (+) True G13964
TU20511 lncRNA upstream 505379 20616158 ~ 20617660 (+) True G13909
TU20456 lncRNA upstream 527946 20591718 ~ 20595093 (+) True G13863
TU20640 lncRNA downstream 17851 21148180 ~ 21148512 (+) True G13992
TU20641 lncRNA downstream 18892 21149221 ~ 21150007 (+) True G13993
TU20642 lncRNA downstream 20329 21150658 ~ 21151136 (+) True G13994
TU20644 lncRNA downstream 21774 21152103 ~ 21153782 (+) True G13995
TU20627 lncRNA downstream 35759 21166088 ~ 21168887 (+) True G13983
XM_043255915.1 mRNA upstream 285 21116469 ~ 21122754 (+) False itgb1b.2
XM_043255911.1 mRNA upstream 285 21116470 ~ 21122754 (+) True itgb1b.2
XM_043259199.1 mRNA upstream 7040 21099685 ~ 21115999 (+) True LOC122359068
XM_043259209.1 mRNA upstream 7040 21099687 ~ 21115999 (+) False LOC122359068
XM_043263556.1 mRNA upstream 27474 21073085 ~ 21095565 (+) True LOC122362210
XM_043255893.1 mRNA downstream 680 21131009 ~ 21145290 (+) False epc1b
XM_043255881.1 mRNA downstream 3281 21133610 ~ 21145290 (+) True epc1b
XM_043255886.1 mRNA downstream 3283 21133612 ~ 21145290 (+) False epc1b
XM_043260565.1 mRNA downstream 54880 21185209 ~ 21204873 (+) True arhgap12a
XM_043218333.1 mRNA downstream 96994 21227323 ~ 21246000 (+) False nlrb5
TU20478 other upstream 618816 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 637821 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 650423 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 693694 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 3306275 17784179 ~ 17816764 (+) True G13137
TU20649 other downstream 33613 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 33968 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 177078 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 207353 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 207353 21337682 ~ 21361708 (+) False G14211

Expression Profile