RNA id: XM_043256052.1


Basic Information

Item Value
RNA id XM_043256052.1
length 5111
RNA type mRNA
GC content 0.50
exon number 9
gene id grin3ba
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12111956 ~ 12150169 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttataaagcaaaaaatacagAGTGCCCCTTTTAGCCTATTTAATGAAGTGAAGGTTTTAAGACATTTAATAACGTTTCGCAAGTGACACTCAGTAAAGCTTAATTCTTCCCGATCTGATCTTCTAGCAAACCTGGCGTGGCCACAACTGTCCTCCCTCTGAGCTCGGTGATGCTGAGAAGATCTCCAGTGGCACAGCACCTCCTCCCTCAACGGCGCGCACAGCACCTCCTCGCCTTCAGCACTTGGAGTAGACGGAATGGTTGCGCTACTTGCATCTTAACCGAGGCTTTATCCGCGTGCGCGTAAAACCATTAAGGACAAAAACAACTGGACAAGAATAGAGCGATGCCATCTTGTGACGAAACCTCAATCCAGTTGCGAAAGGAGCAGGATGAATTTATTGCTCTCCAGATTCTTGGCATACCTTCACGTCGGGCTCCAGGTCGCGCTCCAGATGTTTATTTATCCTTGTCATCTGCATCCCCAGCCCTGTCACATTCTGGCACGCATTGGGCACACAGTGCGCTTGGGTGCGCTCCTGCCGACCCGCCAGCAGTCCAGGATACAGGGCGCTCTCAACCGCGCCCTGGTCCACCTCCGGCAAAGTGGGAACAACTTCTTACCGTACAACCTGAGCTTGGAAGTATTGTCCCGGGAACCGCTCAATGGAGACCCGGAGTCCATGTTCAGGTGCGTGTGTCAGGATATCGTTGTTCAGGGAGTCTCGGCGGTGCTTGCCTTCCCTCAGAGCCACGAGGAGCTCGTACAAGTGGAGTTCATGTCCTCGTTTTTGGAAATACCTTTCATCAGCATCATTGAACAGGGCGAACCTCTTAAGACACAGAACCGCTTCCATTTACAGATGATGACACGTACGCCCCCATCAGGACTGTCAGAGCTGCTGTTGGCGGTGTTGCTGAAGGGAGGCTGGCAGGGCGGAGCGGGCATTCTTTGTTCGGGAGGTGGAAACACGGGAATGCTGGAAGAACTTGAACAGCGGGGTCATTGGGGCTTGAATGGAGCCCACTGGCACCTGTGGGAGACCCTCAACCTGTCCAGACTGGAAGAAAACTTGAACGAAGACAAGGTAATGGAGCTCCTCTCACAGCTCCTCAGCAGGACTCCTTCTGTTCCAGCGTCGTCTGTGGTGCTTTTCGGCTCCGACCCTGAATGTACAGCAAGAGTGCTGCGCAGCGCCCACCAGTTGAGCGCTGCATTGCCTCCAATGCACTGGATCATGGGATACCCGCTTAGTCTGGATTCTCTACACTCCATTGGCTCCCCCCTGGGTCTTCTGGCTTATGGGGAGGTAAATCGCAAGCCTCTGAACTTCTACATTAGGGATACCCTGCAGCTTATTGGCAGAGCTGTGTACGCTGCCACCATGGTGAGACCAGACCTGGCTCTCATCCAGAACATGGTCAATTGCTTCGACAAGCCCAATAAACATGAGCTTCCCTCCTCTGGACAATACCTTGCCAGGTTCTTGTCGAACACTTCTTTCACGGGGCTGACAGGCCCAGTGCGAGTGCAGCGCTCCCTCTCCAGGGTTCTTACCTCCCAGCGCTTCCACATATGGAGTCTACAGCGAGACCCTCTGGGCCAGCCAAGTTGGGTGACCGTGGCAAGCTGGCAGTCGGGCCGTCTGGAATTGGAAGAGCAGGGCCTGTGGCCAGGCATGACCCAACACCACCGAGAGGATGGCCCAGAGATCAGGCTCGGCGGCCGCTGGCAAGCCGGACTCCCAGTGGCAGGGAGCAGATTGCGGGTCGTGACCTTGGTCGAGCACCCATTTGTGTTCACGCGGGAGGTGGATGAGGAAGGCCAGTGTCCGGCAGGTCAGCTGTGCCTTGACCCTCAAACCAACAGCTCAGAAGTCCTCAACCAGCTGTTCAGAGAGCTGGAGCAAACCAACAGCAGTTCACTGCCAAATGACATGCGAAAATGCTGCTATGGATACTGCATCGACCTTCTGGAGAAGTTAGCGGAGGACATGCACTTCCAGTTTGATCTTTACATTGTAGGAGATGGGAAGTATGGGGCAGGGAAAGGAGGTAGATGGACTGGGTTGGTGGGCGATCTGCTAAGTGGTGTGGCGGACATGGCCGTCACCAGCTTTAGCATCAACTCGGCTCGAAGCAGAGTGATAGACTTCACCAGCCCCTTCTTCTCCACCAGTCTGGGGATCCTGGTGCGGAGCAAGGACACGGCTGCACCCATTGGTGCCTTCATGTGGCCGCTTCACTGGTCCATGTGGGTTGGCATCTTTGTGGCATTGCACATCACAGCCCTTTTCATCACACTTTACGAGTGGAACAGTCCGTTTGGCATGACCCCTCACGGACGCAACCGCATCAGGGTCTTTTCTTACTCTTCAGCACTGAACCTCTGCTACGCCATCCTGTTCGGCCGAACCGTTGCCAGTAAAACTCCAAAGTGCTGGACGGGCCGCTTCCTCATGAACCTTTGGGCCATATTTTGCCTGCTGGTTCTGTCCAGTTACACAGCCAACCTAGCAGCTGTTATGGTAGGGGAGAAGACCTTTGAGGAGGTGTCAGGGATTCATGATGTCAAGCTCCATCACCCATCTCTAGGGTTTCGCTTCGGCACAGTTCGAGAGAGCAGTGCTGAGGACTATGTGAAAAAGAGCTTTCCTGAGATGCACGAGTACATGAGGCGCTTCAATAAGCCCACCACTCCGGATGGAGTCTCTACACTCAAGACAGATCCCCCTCAGCTAGATGCCTTCATCATGGATAAGGCTTTGCTGGACTACGAGGTGTCCATAGATGCAGACTGCAAACTCCTAACTGTAGGAAAACCGTTTGCTATTGAAGGATACGGCATCGGCCTGCCCCAGAACTCCCCTCTCACTCGCAACGTCTCTGAATATGTCAGCCGCTACAAGTCTGACGGTTACATGGACATGCTGCACGACAAGTGGTATAAAGTGGTTCCCTGCGGAAAGAGGGTTTTTGCAGTGACAGAGACTCTGCAGATGGGTATCCAGCATTTCTCGGGGCTGTTTGTGCTGTTGTGTGTGGGGGTGGCAGGTGCTTTACTCACTCTGCTGGGAGAGCACACTTTCTTCAGATTCATCCTGCCTCACCTCCGCCACCAGCAGAGATTCAAATACTGGCTCCACACCAGTCAGaaaatccACCGTGCATTAAATATGGGTTGTGATGATGAGAGGAAATCAGAGGTTGAGAGCAGTGACAGATGTCCCACCTTGTGCCTGTCAGAGAACTGTAATCTCCACCGCCTGCCACCCTCcacctcctctcctcctccctccacctcctccacgTCCCCTTCCACTTTTACAACCAAGTGGAACAACCAGAGCGCCAAGGCCGGTCGAGAGGCCAAAGAGCAAAACAAGCGTGTCCACTTCAACTTGGAGACTCTCAACAGCTACCAACTCCAAGCTCCGCCCACCGGGCCAGAAAGGGGCCGGCGGGGGTTGGTGGGAAGCCCTCCCACCCAGTTGTGTTCCAACGGCGGTCCTAATCCCAGTCTCAGCCTGGTGCTCTCACCCCCGGCGTGTTCTGGACTCTCTACGCCTTGGGAAGAGGAGCTGCGGGAGCTGCAGGGGAGGATTGAGGAGTTTCGCGGCCAGCTCAGGGCCGCCCTGGCCAGGCGAGCCGAGCTCCAGCGGACCCTGGTAAGACAACGACTCAGTCAGTCCCAAGCAAGCTCAGCATCTAATCCCACCATCAACACCCTCACCAAAGACGTCAATAAGGGGAGGTGATGTACGCTATGTGTCGGGACACTCACAGGACCTTCTCTGACCTGGGAAGTCATGCCGTGTTGTTTTCCGGCTTCTCCTTTCTCAGTGACTGCTGGAGTGCTGCAGTGATGGATAAAACACTCTGTGATGGAGATTCTGCTTGTAATCCTGCAGTCTGGCTGACTTCCAGCTACAGAGAGAAAGcatttatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatttaAAGCCAGGCAACTGGACAGAGAACAGATACTTAATGCAACCATTCACTGCTGGCCAAGGTGAATATCTGCATCCACAGACGTCCAGCATGAAAATGGcttcattttgtaaataattcaatGGGATTACTTAGTGGGATAAGCAACAATTCCTCGGATGGCAGGCCCACGGACCGCCCACAGTCCGCTCAGTGACCGCCTGACGCAAAAATAACAACTCCAGTTCTGATCTGATTGGTAGATGTTTAGCAGCTTCTGGGAGCAAAGGCACAATGTTTTTTGATCAGTAGTCATGGTCAGGGGTTGATACGATAAACACTTTTGAGGAGGAAATAATCACTGGATTTGCCAAAGTTTGCAAGGTTAATAACAGCAGGGTTTGGCACGAGGCACTTAGCAGAAAGATAACTAGACATCCACAAGCAGAACTTTTAACAATGTCCATAAAAGTATTTCACACAGAAATTCATATTCTAAACATTTGCtgctattttaaagttttttcgATATAATCATTGAGACAAGAATTTAAATTAGACAATGAATCATTGATAATGTGGCCTCAAAAttaataagcattttattttattttcattcccTCATTTAAGTTAAAGTGGCCATGCTGtagtaatgtatttatttgaattaaaacaagAAGACGAATTAGTGCAACACAGTTGTTATTTACTACAAGTGAACAAATGAacaagtcttgttttttttcctctgcatATCATTTTCcggttttattattatgatatattcTATTTCGGACAACTGTGGTCCTAAAAgggcacataaaaacaaaacagactggTTTGGTCATTTTATACATCAATCAGGTGGCCTCTTCCCGTTTGAGTGGGCGGTTCCTGGCCGAAATAAGCTGCCATGGaccaaactttacattttaattaaaccacTTGTCTTGCTGTGGTGTACTTTTTCCACACTTATAacgtttgaataaatatatcgtttgcttgtgtgttttaACGGTGATAAAATTACGATCCTGTTTGAGATGTTTGAACCTCAAATGTCACGGGcctatatataatctaaatgtTATCAAGTCTGAAAGAGTTATtgcatttacaattattaataaacattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16942 lncRNA upstream 10830 12100875 ~ 12101126 (+) True G11419
TU16629 lncRNA upstream 493093 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 498390 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA upstream 500869 11610475 ~ 11611087 (+) False LOC122328936
TU16616 lncRNA upstream 610370 11500389 ~ 11501586 (+) False mast3a
TU17037 lncRNA downstream 187498 12337667 ~ 12339049 (+) True G11505
TU17175 lncRNA downstream 395184 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 464206 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 465826 12615995 ~ 12621414 (+) True G11595
XR_006252588.1 lncRNA downstream 473660 12623829 ~ 12624952 (+) False LOC122358236
XM_043218259.1 mRNA upstream 22030 12068261 ~ 12089926 (+) True slc7a14a
XM_043218268.1 mRNA upstream 22030 12068261 ~ 12089926 (+) False slc7a14a
XM_043218277.1 mRNA upstream 22030 12068261 ~ 12089926 (+) False slc7a14a
XM_043218285.1 mRNA upstream 22030 12068261 ~ 12089926 (+) False slc7a14a
XM_043217077.1 mRNA upstream 72481 12034994 ~ 12039475 (+) False eif5a2
XM_043254130.1 mRNA downstream 5925 12156094 ~ 12168917 (+) True plppr3a
XM_043223854.1 mRNA downstream 26059 12176228 ~ 12189936 (+) True palm1b
XM_043223860.1 mRNA downstream 26060 12176229 ~ 12189936 (+) False palm1b
XM_043223867.1 mRNA downstream 32127 12182296 ~ 12189936 (+) False palm1b
XM_043219545.1 mRNA downstream 41060 12191229 ~ 12201145 (+) True ptbp1a
XR_006252734.1 other upstream 174366 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 606226 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 611878 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 613019 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 770845 11339863 ~ 11341111 (+) False mrpl34
XR_006247874.1 other downstream 129742 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 130421 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 131203 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 473654 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 717814 12867983 ~ 12873145 (+) False rnf152

Expression Profile