RNA id: XM_043256186.1


Basic Information

Item Value
RNA id XM_043256186.1
length 2544
RNA type mRNA
GC content 0.46
exon number 5
gene id dmbx1a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7340271 ~ 7346655 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGCGCGCAGGGAACGGTTTGGAGTCGCTTGATACTTAGCGGATACATTTGAATGGGCTCTTAGATTTTGAAAAACGCGATAAGGACATCTGGGAAATACTACGGGCTACGAGCGACAAAATACCAAGTGACAGTCTAAAACACTGGATAAAGGACAAGACTGAGatatttttgaAACATGCAACACTACGGAGTGAACGGATACTCTCTCCACGCCATGAACTCACTGAGCGCCATGTACAACCTGCATCAACAGGCGGCGCAACAGGCGCAGCACGCGCCAGACTATCGGCCGTCCGTTCACGCGCTCACGCTCGCGGAGAGACTGGCTGGCTGTACATTTCAAGATATCATACTTGAGGCTCGCTACGGCTCTCAACATCGCAAACAACGCCGCAGTCGCACCGCTTTCACGGCCCAGCAACTGGAGGCGTTGGAGAAGACCTTCCAGAAGACGCACTATCCTGATGTAGTGATGCGGGAGCGCCTGGCCATGTGCACCAACCTACCTGAGGCGCGCGTACAGGTATGGTTCAAGAACCGCCGTGCAAAGTTTCGTAAGAAGCAGCGAAGCCTTCAAAAGGAGCAACTGCAGAAGCAGAAAGATGTCTCGACAGATGGGCCCCTGACAACGAACGATAAGGACGATGCCCCTTCCAGCATAAATCTTGAGAACCAGCCACCttcgtcatcatcatcttcctcctccATGGAAGCAGAGGCGGCTCCTCACGCGCTGGGATCAGAACTTAGCGTTGAGCTTAATGTGACATCGGCAGAGCAGTCAGGCAGCGAGTCGGCCACAGAGGACAACGCGACTGACAAGGAAGAGGAGATGAAGCAACACAGAGAAGATCTGAAGGTTGAGAAAGAACCAGCACCCGGAAACATGTCCCCACTTTGCAAACGTCTCAGCCCCAAACCAGATTCTCCTCTGGGCTCCCCGGCTATCTCATCTTCTTCTAGCGGGGTGACTGGCGGGATCTCTCAGAGTCACTCATACTCCTCGTCGCCGCTCAGCCTCTTCCGTCTGCAGGAGCAGTTTCGCCAGCACATGGCAGCTACCAACAACCTGGTTCATTATCCGTCTTTTGACATGGCAACCCCGTCGTCTATACCATACCTGGGCATGAATGTCAACATGCCAGCACCCCTGGGCTCCCTCCCCTGTCAGTCATACTATCAGTCCCTATCTCACCATGCgcaacaggtttggaacagcccTCTGCTGCAGGCCTCTGGAGGTCTTCCTAGCCACAACAGCAAGACCACCAGCATTGAGAACCTACGCTTGCGGGCGAAGCAGCATGCGGCATCACTGGGCCTGGACACGCTGCCCAACTGAGCAGGAGACTGAAACCTACCTGAGCAAGGGAACATCTCTCTACCACTACTAACATGCCACCTGGACTTCTAAAATTAGGGCCAACACTCAGAAAAGTATGGCACTGAGGTTGAGACTAGTAAAAATCTCAGACTCTTTTAGAGGGCTTGTTGTTTCGAGGATTAAATAGACAATAAAACGATGGTCTAATTTAATTCATCATGATATTACATTTGTCAGCTTTGCATAAAATACAGACAGGCCATGAATTAgatttagtgttatttatatgttttggATGGGCATAGATGTTTGATATAAGCACTTTTTGGAGATGATCTCAGCCAGTTGCATGCACTGTACACCAGAATCTGAAAATAACtttcttttaattcaattatCGTGGTTCTCAAAACACACATCACACaagttgtaaatgtaaatcttgCACAACTAAATAGATTAATTAAACCTAACCTGTTTAATGGTCAGGATTAAACCACGGTAAATTGAGGATGGTTGGGTAATGAGAAAATTGTTTCATTGACTACATATGCAAAGCTTTTAATTACATGCAGCCTCAGGCAGTGGAAGAAATGCAATTATAGACCATGCATATCATTGGAGATCGCCATATTAACACTCGGAGGGAAAATACTCTGAAGAAAACTAGTGCTTAAGTGCATATAAATGTTGCAACTGGAAACAATTCTGAATAGCGGTCAAATGCCGAGTTCTCAAGTAGAAAGCAAAGCACTTCTATGTATGGCAGCTTTTTCTCCCCCCTCTCTGCTCATTCTTACACTCTCAGTGCTGAGCTCTCATTGTGTttgtaaagtattttaatatgtacaatacAAAGTCTATCTATAAATGTTTACTGGTAAGGCAAATGTTAAAGTTCTATGTTTTAGATTGAGAAGAATTTAACCCTGTGATGATTCTGGTAGCTGTCCCTTTGTAAGATTGTACTGGGTGGGCCGCACAGCCCGCCTGCGTCTTCCCCCAGATTATTTAACCTATACAGTCTGGTCGTCTTTGTAACTCTTTCATTGTGAACATCAATATACAGTCACTCACGACATCACACGAAGTGGTGAATTTGTAGCCTATATTGGTGGAGAGTGTTCCGGAAGTATACACATCTTTCCCTATGTCAGTTGTAGATTTAAaaacttgtaaaataaaacttcaataaaacattGCTTGGGCatcttta

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0030901 midbrain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24893 DMBX1; diencephalon/mesencephalon homeobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14967 lncRNA upstream 40192 7285678 ~ 7300079 (+) False gng12a
TU14911 lncRNA upstream 129333 7210738 ~ 7210938 (+) True G10021
TU14910 lncRNA upstream 130337 7206507 ~ 7209934 (+) True G10020
TU14903 lncRNA upstream 140734 7197090 ~ 7199537 (+) True G10013
TU14902 lncRNA upstream 143871 7189655 ~ 7196400 (+) True G10012
TU15018 lncRNA downstream 73787 7420442 ~ 7421878 (+) True G10094
TU15044 lncRNA downstream 134975 7481630 ~ 7555541 (+) True G10112
TU15033 lncRNA downstream 157967 7504622 ~ 7582245 (+) True G10108
TU15035 lncRNA downstream 157967 7504622 ~ 7582245 (+) False G10108
TU15039 lncRNA downstream 157967 7504622 ~ 7582245 (+) False G10108
XM_043216752.1 mRNA upstream 40170 7285670 ~ 7300101 (+) True gng12a
XM_043216746.1 mRNA upstream 40170 7297986 ~ 7300101 (+) False gng12a
XM_043257685.1 mRNA upstream 56461 7269715 ~ 7283810 (+) True wls
XM_043257663.1 mRNA upstream 71866 7257164 ~ 7268405 (+) True scinlb
XM_043256906.1 mRNA downstream 41763 7388418 ~ 7391035 (+) True ptger4c
XM_043218822.1 mRNA downstream 968476 8315131 ~ 8318467 (+) True glula
XM_043263850.1 mRNA downstream 1026583 8373238 ~ 8382443 (+) False elovl1a
XM_043263841.1 mRNA downstream 1030637 8377292 ~ 8382443 (+) True elovl1a
XM_043263798.1 mRNA downstream 1040222 8386877 ~ 8403214 (+) True cc2d1b
TU14783 other upstream 353152 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 647896 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 649492 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 972317 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 1117752 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 158936 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 760210 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1815956 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2399939 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2564973 9911628 ~ 9916861 (+) True znf414

Expression Profile