RNA id: XM_043256234.1


Basic Information

Item Value
RNA id XM_043256234.1
length 1480
RNA type mRNA
GC content 0.41
exon number 3
gene id penka
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6970493 ~ 6973171 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCTTAAAGTTGTGAGTGACGGTCGTTTCTGAACAGAGCAGGTCTGGATTTTATCCTTGTACTTTGAGATACAAGGTACTTCAACAGAGACTCGGTGAAAAGCGacgcttttctctttttgttcccTTCGAGAAGCTGTCCAACGTATTCAGCATTGCAGTGGACATTGCGAAAGAAAACTATTCCCATGGCGTTAACTGTGAACTGGTTGACTCTGGCTTTGAGCGCCTGTCTCTTGCTGATGGTTCGCGGTGACTGTGACAGAGGCTGCGCTCTCTGCGTTTACAGGCTATTCAGTCAACAGAGAGAGATCGACACACTGACCTGCTCATTAGAATGTGAAGGGACAGTGGACTCCAGAAAACTAGAAATCTGCAAAAACATACTCAGTGAAGAAGATCGCCTTGCAATGGACAACCTTAAACGAGATGAAGAGATTACAGACCATCTTCTCATGAAAAAATATGGTGGATTCATGAAGCGTTATGGGGGCTTCATGATTAAGAAAGGTGCAGAGATTGGCATGGGAACCCCAGCTGAAAGTGACGGCACAGAAGCCATTAGTAAGAAATATGGAGGCTTTATGAAGAAAGACAAGGCAGAAGGTGGAGCCGAAGACCAACAGATGGAGCTGCTGAGAGAGATCCTCAGGGTGGGTCTCACCTCAGAGTCAGAGGAGCAGCATGATGGGGACATAGTCAAGCGCTATGGGGGATTTATGAGGAGTGTACAGGGTCTAGGGGAGGCAGGGAGAGACTTGCACAAGAGATATGGGGGGTTTATGCGCAGAGTGGGCAGGCCTGACTGGTTGGACAACCAGAAAAGCAGTGGGTTTCTGAAACGCACTTGGGAGGATGGAGGCGAGACTACCCTGCCCAACATGCAGAAAAGATATGGTGGATTCATGGATTAGAATTTAAACATGGACACCCACACTAAACAATCTGTTGCTACTTTATGTAGAGCTTGCACTGTGTTGTACTTGCACTGTAGTATcatgtgaagccatttttaatttatatttattttaggctGAATATACAATACAGTTATATTTGTGTTCTCTGTGAATAtggtttgtgtttaaaaaaaaagaaaaaagggaaaaaaaatattttccaattCTTTGTGTTTACAATGAAATCATCCATCAGATGGTACTTTTGgtaaagacaaagacagacaacaataataaaactactATATGgatcacatgaataaacaatagtTTTCACATTGTTCATATTGTTTTACATTGCTTTGTTCTCTGAGAATCTCATCACATTAGCTAGTGTGCTTTGCTCAAACTTTGTAGATGAGGTTAAATCTGCTGTCTGCACTTGATATGTGAATggttaatgcatttctttaaaaaaaaacactttataacaGCTTTTGTTCTTGTTTAAATCAGAGCAACATTTCTGAGCTATTAGCTGTACAGATTACAATAAATGAATCTTATTGCAGAAGTAAAA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14775 lncRNA upstream 44316 6925969 ~ 6926177 (+) True G9918
TU14749 lncRNA upstream 128068 6842151 ~ 6842425 (+) True G9901
TU14740 lncRNA upstream 141397 6828447 ~ 6829096 (+) True G9893
TU14739 lncRNA upstream 214401 6755823 ~ 6756092 (+) True G9892
TU14737 lncRNA upstream 228320 6741733 ~ 6742173 (+) True G9890
TU14790 lncRNA downstream 27889 7001060 ~ 7001479 (+) True G9928
TU14792 lncRNA downstream 36189 7009360 ~ 7010594 (+) True G9930
XR_006247246.1 lncRNA downstream 62885 7036056 ~ 7036460 (+) True LOC122324999
TU14802 lncRNA downstream 62950 7036121 ~ 7036498 (+) False LOC122324999
XR_006247410.1 lncRNA downstream 69660 7042831 ~ 7043088 (+) True LOC122325829
XM_043260277.1 mRNA upstream 90844 6856244 ~ 6879649 (+) True bpnt2
XM_043260288.1 mRNA upstream 90844 6856254 ~ 6879649 (+) False bpnt2
XM_043260296.1 mRNA upstream 90844 6856685 ~ 6879649 (+) False bpnt2
XM_043260303.1 mRNA upstream 91970 6856251 ~ 6878523 (+) False bpnt2
XM_043260312.1 mRNA upstream 91970 6856263 ~ 6878523 (+) False bpnt2
XM_043258773.1 mRNA downstream 110963 7084134 ~ 7098176 (+) True cryz
XM_043258792.1 mRNA downstream 110963 7084134 ~ 7098176 (+) False cryz
XM_043258783.1 mRNA downstream 111058 7084229 ~ 7098176 (+) False cryz
XM_043258735.1 mRNA downstream 125132 7098303 ~ 7105792 (+) True lrrc53
XM_043258743.1 mRNA downstream 127011 7100182 ~ 7105792 (+) False lrrc53
TU14736 other upstream 278118 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 279714 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 602539 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 747974 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 749993 6220426 ~ 6220500 (+) True trnag-gcc_20
TU14783 other downstream 13127 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 532420 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1133694 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 2189440 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2773423 9746594 ~ 9751212 (+) True arpc5a

Expression Profile