RNA id: XM_043256474.1


Basic Information

Item Value
RNA id XM_043256474.1
length 5566
RNA type mRNA
GC content 0.45
exon number 25
gene id slc4a2a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15085362 ~ 15112144 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagggagagagagagacactgagacagagagaggttAGGGTAAAAGGATAGTGCGCTTCAACTTCCAGAACAGCTTTTCTGTTCTCCAATCACTGCCTTTTTTCACCTCCTGTCCCTCCTCCctctgtgtgtctctttctttttctgcctttcGGTGGCTGTTTGGCTTCAGTGGGTCTTTGCCATTGCACTACAATGACTACTGTAGCTGTAGCTTTCCTGCAGTGAGCATTCTGAGGCCAGTGATGATGAGGGGTCTAGAGTTACGCTTGGTATCAGAGTAACAATGACTTTGGCCCAGATTAAGAGCATTGGATGACTCAGTGATTCTTCTAATGGACTGGAATACTGAAGGTTATGCTGCCCGAAAGTTCCCAGTTGAGTCTGAGTGAAAGAGAAAAGGGCTAAAGCCAGCGCACTTTACAGAACCACCCAGAAACCTGACCATAAGCAATGAGTGACCCTCAGGATGCCAGTGACGTCACTTCAGCTGCAGGCTTGACCAGGCATTTGCCTGTTGCAGTGCATTCTCCGCCCCAGcgatgtgatgatgatgatgaaggggACCTGAACAAAACACTGGGAGTGCAGCGCTTCCAGCAGATCCTCACACCCCCCCAGCGTGTGCCCATCGAACAACACCGCACCTTTAATGAGGAGGACTTTGAGTATCACCGTCACACCTCTCTACACATTCACCACCCTCTGTCTAAACACATCCCAGAGGGCCGGAGGAAAAAGCCCGGAAGAAAGCGGAAGGACTCGGGGCGGAGGAGGAGTTCATCCATGGGATCAGCTCCCCCGatagatgaagatgaagaggatgaagagGTGGATGAAGATTCCTGTAGCCAGCAGGATAAAGAGGGCAATGTCACCACCACACCTACACCAGAAACAGACACAGAGGTGGACGCACAGTTCTTTGTGTCAGAAGATGATCCTGACTCCACTGTAAAGAAGAACGGTAAAGCCTCACCCCAACGAAAGCTGCCAATCATACCCCATTCGATGCTTCACACCAGTATCAGCATCCCAGAAAATGTTACAACAACTGTCGGCAGAAATTGGGTTCGTAATCTGCCCAATGGCAGACGGGTTTCTGCACCATGTTTGTTTCCAAGTTTGAATTCTGGCCGCAGCTATGATCTGCAGGAGCGCCGCCGGACTGGCAACATGACGGGCACTTCACTAGAACACTACCAATACATGCCCACTGATGAGAGCGAGGCACAGACGCTCGCCACCGTTGACCTGGATGGAATTAAAAGTCACAGGTTTGAAGATGTCCCTGGTGTCCGGCGGCACCTGGTTAAGAAGAGCGCCAAAGGTCAAGTGGTTCACATCGGCAAGGACCACAAAGAACCCAGCAGTCGTATCCGGACCAAGTTGGATCGAACCCCACATGAGAGGAGATCATGGCCCTGTTACATGGACTATAGGGTTCATCATGCCCAACAGCTGAAGGTTTTTGTTGAACTGAATGAGTTACTGATGGATAAGAACCAGGAGATGCACTGGAAGGAAACAGCTCGTTGGATAAAGTTTGAGGAGGATGTGGAGGAAGAAACAGAGCGCTGGGGCAAACCCCATGTAGCTTCACTCTCATTCCGCAGCCTGCTGGAGCTCCGCAAGACCATTTCACATGGTGCGGTGTTGTTGGATCTGGACCAGAAGACACTGCCTGGTATTGCTCATCAGGTTGTGGAGCAGATGATTATCTCAGATCAAATCAGAGCACAGGACAGAGCCAATGTGCTCCGAGCCCTGCTCCTCAAACACAGTCATCCGAGTGATGGCAAGGAGCACAGCTTATTTAAACGGAACATCTCAGCAACCAGCCTTGGCTCTCTCATATCACATTACCATAGCAGTAACCATATCGCCGCACCAGAGCCCCCTGCCACAGACCCGCTCATCGGGGGACTGCGTAACTTTGAGTCACGCATTAGTGTAGACTCAGATAGGAACGAGAAAGACATGCCCCAGTTTTTTGGTTTGCACAAGACCAAATCCAAACATGAGCTGAAGCTGCTTGAGAAGATCCCAGAGGATGCAGAAGCAACCGTTGTCCTTGTGGGTAGTGTGGATTTCCTGGACCAACCCACCATGGCCTTTGTGAGGCTGCAGGAAGCGGTTCTCTTAGAGTCGGTTCTAGAAGTGCCGATTCCAGTGCGGTTTCTTTTCGTGTTGCTCGGCCCACCCAGTGCCAACATTGACTACCATCAAATCGGCCGCTCCATATCAACACTTATGTCTGATAAACACTTCCATGAAGCGGCGTATTTAGCAGATGAGCGGCAGGACCTGCTGACAGCCATCAACAGCTTCCTGGACTGCAGCATTGTGCTTCCTCCATCTGAGGTCGGAGGAGATGAGCTGCTGCATTCTATCGCTCGCTTCCAGAGAGAGATGCTGCACAAGAGACATGAACAAGTAGTCAAACTACAGGCCAAGGAGCCCAAGAGCCCCGAGGACATTGCACTTCATCCTCCTCTGAAACCTGAAGACGATCCTCTTCGGAGGACGGGTCGGCTGTTTGGCGGGGTTATCCGAGATGCACGGCGCCGCTACCCCAAATACATCAGTGATTTTAAAGATGCCCTAAGTCCTCAATGCATGGCCACGGTCATATTCATTTACTTTGCCGCCCTTTCTCCTGCCATCACCTTTGGAGGACTATTGGGTGAAAAGACAGATGGTTTGATAGGTGTGTCAGAGCTGATCATTTCCACTGCTGTGCAGGGAATGTTGTTCTGTCTGCTTGGGGCTCAACCTCTGCTGGTGGTGGGATTCTCTGGACCCCTTCTAGTGTTTGAAGAGTCCTTTTATTCATTCTGTAGGGCCAATGAAATGGAGTATCTGACAGGACGTTTGTGGATTGGAATCTGGTTGATCATTATTGTAGTCCTCACAGTGGCCTTTGAAGGGAGCTTTCTGGTGCGATTTGTGTCACGCTTCACCCAAGAGATCTTCTCCTTCCTTATCTCTCTCATCTTCATCTACGAGACCTTCTTCAAGCTTGGCAAAATCTTCATGGATCATCCTCTCAGAAGCTGCAGTGGGCAGGAAGAAAATGACACTGCTATACCAACACCTGTGAGTGACGACAGGTCTTTAGATGCCTCTCAAAACCTAAACCAGCCAAACACAGCTCTCCTCTCCCTGGTGCTCACAACCGGCACCTTCTTCATTGCCTTCTATCTGCGTAAATTCAAGAACAGCGCTTTTTTCCCTGGAAAGCTCCGAAGGGCTATTGGAGATTTTGGAGTTCCTATTGCAATCTCCACCATGGTTCTGTTGGACTACAGCATTAAGGACACTTACACACAGAAACTAAGTGTGCCTGATGGCTTCTCTGTGACCAGCCCGGACAAGCGTGGTTGGTTAATACACCCTCTAGGCTCTGATGGCCAGTTTCCCATTTGGATGATGGTTGCCAGCATTCTACCTGCCCTGCTCGTCTACATCCTCATTTTCATGGAGACTCAAATCACCACTCTTATTGTGAGCAAGAAGGACAGGATGCTGGTTAAGGGTTCAGGGTTTCACTTGGACCTGCTGATTATCGTGGTCGCAGGAGGTGTTTCAGCGCTGTTTGGGCTGCCATGGTTGACCGGTGCTACTGTTCGTTCTGTAACTCATGCAAATAGCCTCACTGTGATGAGCAAAGCCGTTGCGCCTGGTGACAAACCACGCATTCAGGAAGTGAAAGAGCAGAGAGTAACAGGATTTTTGGTGGCTCTTCTAGTAGGTCTCTCCATTGTGATTGGAGATGTTTTGCGTCAGGTTCCTATCGCTGTGTTGTTTGGTATATTCCTCTATATGGGAGTGATGTCTCTCAATGGGATCCAGCTAACAGAACGCATGATGCTGCTATTTATGCCACCGAAGTACCATCCTGATCACACCTATGTCCGCAAGGTGCGTACTCTACGCATGCATCTGTTCACATGTTTGCAGCTGGTGTGCCTGGCTGTGCTTTGGGCTGTAATGTCAACCTCGGCCTCGTTAGCCTTCCCGTTTGTTCTTGTCCTCACCGTGCCATTCAGAAGGTTCCTGCTATCCCGAATATTTACTCAACGTGAGATACAATGCCTCGATGCAGATGATGCAGAGCCGTTGTTGGATGACAAAGAAGGCCAAGATGAATATACAGAGATGCAAATGCCAGTATGACCTCATTCCTCACCTGTCACTTCCTGGGCTGGCCTGGCTTTCTTTTTAGTCAGGGATGTCCAGATGTActgcctgtttttatttttattaatcagttTTTATCTCTTATCTTGTTTCCCTATTTTGTTTTCgcttaaattatgtaaacattatatttatacatatgtaAAAGTGTTAAGAGGTTGCTCAATGTCACTTGAGCAACTGTGTATCTgttgcgagaaaaaaaaaatctttgtcgccgtttttatttatcttgttgaaatgttattatgttatgtgtgtgttttggagggttaaatgaatttatgataTCCAGTCAGCTCAAAAATGATACAGGAAGCACTTTAAGGTAACTTTAAAATGAAGCCTTTTCTACttatcagtttgttttatttcattgcaaGGTGGCATACAGTATACTCCTAAAATGAACAACTGTACAGAATGACAATAACTGAGATTATATATGGTTGATATTTTTGTAGCTAAACAAAAACGATACACAGATGTATGCTATATTCAGCTCATATCGCCTACAGCAACaagtttattttgaagaaaaaaacatatactgATCTATGAATATGTTCTTGAAtgttttgaaagtatttttctCACCAGAGCACCAAGGAGgcctgtgtgtttatataacaTGGACACTAAGAGAATCATAGAGGTAGTCTtacaataatacataaatatacaggGTCATTAGATTATAATGGATTTAATTTACCTACCTTTTTCTGAGTGAAAaattaaagagagagaaaagtaattttaaaatgttttatggagTTCAACAGTTATGATGAATAATGTTATGATTAAATAtcaccaaacacacaaaatggttTGATTGTTTAATGcactactgtttatttttattaacaaatttcATAGGTGACTATTTGTCTATTGAGGTACGTAATAATttgttaaagcaaaaaaacaaacaaacaaacaagcgtAGATTTGGTATAATGCTgtaatccatttttttaaatgtctcatGTACATTCCAATCAAAAAGATGATcttgcaaataattatttttttaaaaaaagggacaacctcttaaatgttatttcatcTGTTGTGTGTGCGTAAGgtcaaaatatgtatttccCCCTGCAAAAACTGAgttcattttactgttttcattACGATCTCACATTGTAGTAGTGCCTTTCTTCAGATATTATGTTGCTTCACAAAGTTGAAAAAAGTGACCTTAGCAAGTGAAGATAGCAAGTATGAAAGAGAAAGCTGTTCAGtagatttatttgattaacGTTTCACTGTAGAACGCCAGTCTTTGTTTTAGCTTTGTAAATATTCGGAGTACAAGCTCAAACCTAATAAAATAATGGAACTGATTTAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006820 anion transport biological_process
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18059 lncRNA downstream 150337 14934769 ~ 14935025 (-) True G12199
TU18026 lncRNA downstream 230193 14853694 ~ 14855169 (-) True G12175
TU18027 lncRNA downstream 231810 14852910 ~ 14853552 (-) True G12176
TU17995 lncRNA downstream 309871 14773753 ~ 14775491 (-) True G12161
TU18248 lncRNA upstream 115411 15223211 ~ 15223455 (-) True G12308
TU18253 lncRNA upstream 130159 15237959 ~ 15240826 (-) True G12313
TU18255 lncRNA upstream 130159 15237959 ~ 15240826 (-) False G12313
XR_006252728.1 lncRNA upstream 439235 15547035 ~ 15553546 (-) False LOC122359617
XR_006252727.1 lncRNA upstream 439235 15547035 ~ 15553546 (-) True LOC122359617
XM_043256524.1 mRNA downstream 1208 15073685 ~ 15084154 (-) False ubtfl
XM_043256517.1 mRNA downstream 1208 15073685 ~ 15084154 (-) False ubtfl
XM_043256501.1 mRNA downstream 1209 15073685 ~ 15084153 (-) True ubtfl
XM_043256493.1 mRNA downstream 1214 15073685 ~ 15084148 (-) False ubtfl
XM_043256508.1 mRNA downstream 1215 15073685 ~ 15084147 (-) False ubtfl
XM_043256531.1 mRNA upstream 8714 15116514 ~ 15120167 (-) True ttc19
XM_043256537.1 mRNA upstream 8714 15116514 ~ 15119915 (-) False ttc19
XM_043218586.1 mRNA upstream 12787 15120587 ~ 15127491 (-) True faim2a
XM_043220546.1 mRNA upstream 20184 15127984 ~ 15133761 (-) True abcf2a
XM_043224269.1 mRNA upstream 26171 15133971 ~ 15153989 (-) True smarcd3a
unassigned_transcript_207 other downstream 210980 14873076 ~ 14874382 (-) True LOC122360578
TU17840 other downstream 475096 14578995 ~ 14610266 (-) True adcyap1b
XR_006247862.1 other downstream 947213 14138060 ~ 14138149 (-) True LOC122328947
TU17473 other downstream 1521033 13560329 ~ 13564329 (-) False LOC122328470
XR_006247132.1 other upstream 14725 15122525 ~ 15127491 (-) False faim2a
XR_006247859.1 other upstream 22799 15130599 ~ 15130715 (-) True LOC122328941
TU18236 other upstream 39404 15147204 ~ 15151772 (-) False smarcd3a
XR_006247858.1 other upstream 80856 15188656 ~ 15188793 (-) True LOC122328939
TU18553 other upstream 1116979 16224779 ~ 16230221 (-) False pappa2

Expression Profile