RNA id: XM_043256784.1


Basic Information

Item Value
RNA id XM_043256784.1
length 4121
RNA type mRNA
GC content 0.44
exon number 15
gene id prpf4ba
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15248085 ~ 15255907 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attcagtgattcagtcaATTTGGTCTAAATTTCCTTTTCCTTTAGCCTCTGTACAATTATGTATGCGTAGAGGGGAGTGTTacgtacattttaaatagaaatttggAGAAAATTTTGAGTGCTTATTTTAAAGTTAGTACTGGTTGCATAGCCAGACTAAATTTTGAATCGACTCTCTTTGTTAAACGACTCAGCAGGAACAAGCAAGATGGCGAACATGGACGTGTTAGCCAAAACAATAGCGAAGGATTATGTTGAGGATGTGGAGAGCTCTGACAGTGTGGACGAAAATGAATATGGACCCGGTGAGAATGTAGCtagaaaagcagaaaacatGGACATTGCCAGGGTGGAAAGacacaagaaaagaaaacacaaacataggAGAAAGCACAGAAAGCATAAATATCCCTCACCAGATGAGAGGGACCACAAACACaagtacaaacacaaacataagcGGAAACACAGAGACTCATTTCAGGATCATAGAGACTGTTCTGCTGCCTGTGAAGGTGCAGTTGTCTCTCCAAAGCGATCCAGACTTGATGATCTTGCTGCTCTGGAAGACCTGGAGAAACAGAGAGCCATGATTCAAGCAGAGCTTGATAATGAGCTGATGGAAGGGGCTGTGCAATCAGGTATGGGACTGATATTACAGGGTTATAACTCCGATTCAGAGGAGGACGGGGAGCTCCAACAAGCTGTGCAAAATGGTGAGCAACAAAGACAAACTTTTGATGCTATGGGACATGCTGGAAGATCTCAACAGGATTACATAGATGATGAAAAAATTGATCCCTGGCTGGAGGACAGAAGCATAAGCATGTCTGCCGAGATGCCAGTTCGGGCccataaatcagaaaaaagaGTTAGTAAGACTGGGTTAGAAGTTAACATAATTGAAAAACCTAGTAGTCCCATCCAAACAAGGGAACGGAGACGATCCCGGAGCATTGAGAGATCCAAAGATGGTGGTCGGAGATCTAAATCTCCTGTGAATTCAAAGGACCTGCCATCAAGCAACAAAAAATCTACTACACGGAATGAAGAGCAAATTGAAGACCACAGATCCTCAGAAAGTAGGAGCAAGTCtaaagaaagaaactcaaacTTTCCAGAAGCTGACAGGGAGAGAGACAAGAAATCATTGAAAGCACCCTCAAAAGAAGTGTCTTCAGGAAAAGAGAATAGGTCTCCTAGCAGAAAACAACCTCCAGAACAGCATAGCCTATCTGTGCGGCCCAGGGGCCGCCGTTCACCTGAACACATGCCTGTTGCCCAGAGCACAGAGCGGGCATCCAGACAGGACAGAGCTTCATGTCACAACAGATCCCCTCCAAGGAGGGGCCGATCTCGGTCTGTTGAGAGGAGACGGAGAGAAGAAGAACGACAGAGACTCTCCAACGACAGAATGCGATCTCGTGATGTGGCAGGGGGCCGTAGTGAGGATAGTCCCTCTCTAAACTCCAGACGAAGATCAAACCACTCACCTGTCAGACGAAGGTCCCGTTCTCCCAGGAGACGAGCCGGAAGGTCTCCTCTCAGATACAGATCTAGGGAGCGTGAAAGGACCGGGCGCAGACAGCAGGTGCACTCGGGATCACAGGATAGACGGAAGAGAAGGAGCAGGGAAAGAGAGGACATGTTTAAGGGCAGTCTGTCTGAAGGAATGAAGCCTGAGCAGGAGGACTCGGATGAAGAAGTGCTGGAGGATTATGATGTtgatgaagaggatgaggaggCTTTGATAGAACAGAGGAGACTTCAGCGATTGGCCATTGTGCAGAAGTATAAGCCAGTTAATGAGGACAGTAACATGTCAGGACTCTCAGAGCATGGCAGTCCTCAGAGTAGCACTCACAGCCGATCACCTTCTCCCGATGACATCCTTGAGCGCGTGGCTGCTGATGTCAAAGCCTACGAGCAAGAGAACCTGGACACGTTTGAGGATAATGTGAAAGCCAAGCATAGTCTTGTCTCtcaagaaaaaaatggtgCTAATCTGAAAAAGCCAGCAGCCCCAGATATGTTCACAGAGTCAGATGACATGTTTGCTGCTTACTTTGACAGTGCCAGGTTACGGGCCACAGGCATTGGCAAGGACTTTAAGGAGAACCCAAGTCTCCGAGATAACTGGACAGATGCAGAAGGCTATTACCGTGTGAACATTGGCGAGGTGTTGGACAAACGGTACGGGGTGTACGGCTACACTGGACAGGGTGTCTTCAGTAATGTGATCCGAGCCAGAGACTTGGCTCGAGCCAATCAGGAAGTGGCAGTGAAAATAATACGCAACAATGAGATGATGCAAAAGACTGGACTGAAAGAGCTGGAGTTTCTGAAGAAACTAAATGACGCAGATGCAGATGATAAGTTCCACTGTTTGCggctttttagacatttttatcaCAAGCAGCATCTGTGTCTGGTGTTCGAACCACTCAGCATGAACCTGCGGGAGGTGTTGAGGAAATATGGCAAAGACGTTGGGCTACACATCAAGGCTGTGCGTTCATACAGCCAACAGCTTTTCCTGGCCCTCAAACTCCTCAAGCGCTGCAACATCCTGCATGCTGACATCAAACCTGACAACATTTTAGTGAATGAATCCAAGACCATTCTCAAGTTGTGCGACTTTGGCTCAGCGTCACATGTGGCTGACAATGACATAACACCATATCTGGTCAGCCGCTTCTACAGGGCACCTGAGATCATCATCGGAAAGTCTTACGATTACGGAATTGATATGTGGTCTGTGGGCTGCACTCTCTATGAACTATACACAGGAAAAATCCTTTTTCCTGGGAAAACAAATAACCACATGCTAAAACTTGCCATGGACCTGAAGGGAAAACTGCCTAATAAAATGGTCAGGAAGGGTCTGTTCAAGGACCAGCACTTTGACCAAAACGTGAACTTTTTGTATACTGAGGTCGATAAGGTCACTGAGAGGGAAAAGATCACGGTAATGAGTACCATTAACCCAACTAAGGACCTGTCAGTGGACATGGTGGGTCGTCAGGCGCTACCAGAGGACCAGCGAAAGAAGGTTTTTCAGCTCAAAGATCTGTTGGACCAAATTCTGATGCTGGATCCTGCCAAGCGAATCACCATCAATCAGGCATTACAGCATCCTTTTATCCAGGAGAGGATATGATCAGCAGCGTACCTCAGAGATTCATGATGGTTTTGTATCTACAGATATGACTCAGACAACAAAAGacgtttgcatattttattgccatgccattttattttagtctctGATTTGTAGTACGTTTCAGAGCAGGACACAATCaagatttactttattttattattattagatgaCCTACAAGACACCGTGTAAGCTGTAAATCTTTCCGAAAGCAGATAATCTATATTGTTCAGATTGCATGCTTTATACACAGCTTCTTGctaattataatttcaaatatatttgatattatgcTCAATATTCAGAATGTACAAATAGGTGTGCTAAGTTCACAGaccttatattttatgtaacattttagaatttgATGTAAACCAAATATTGCTCAACCACCAAGGACTGTTTAGAGTGTGACGTAAGTAAGACCAGCATAAATGCTGTCTATATCCACCCTCCCTTAGGTGTGAGAGTGAGAACTCAACCTGGCGTGCAGGCCCACGGCATGCCCCTTGCCCTAGGTGTGTTTCTGCTGAATCTGAGGTCTTGGGTCCTGCTTGACCTGGTCTGCAGGGAAAGTCTCCTCTGTAAAGGCAGGTTATACACCTCTATCGGTACACTGAAGGTAAGCTAATCCTTCCAAAACAAACGGCATCAACATTTTAGCCTTCTTTTCAAGcccaaaaataaagtgtcatcATAAAGCCCTTTAGGCTTCTCCTGCATGTTTACAGAATGTCATTTGGAGAAATGGACATGCATTAAAACCCTTTGCCACCCTTTTGCTCTGGACCAAAACCTAGTGAGGTATCCTTCGTAGATTTTTGGCTCGAGCCAATATAATATCTATATtatatctataatataatatagatattatattatattgctgttcaaatgttttgggtctttaatttcatttatttgtttaaaaagttaaaacaactgttttctattttaatgt

Function

GO: NA

KEGG:

id description
K08827 PRPF4B; serine/threonine-protein kinase PRP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18253 lncRNA downstream 7259 15237959 ~ 15240826 (-) True G12313
TU18255 lncRNA downstream 7259 15237959 ~ 15240826 (-) False G12313
TU18248 lncRNA downstream 24630 15223211 ~ 15223455 (-) True G12308
TU18059 lncRNA downstream 313060 14934769 ~ 14935025 (-) True G12199
TU18026 lncRNA downstream 392916 14853694 ~ 14855169 (-) True G12175
XR_006252728.1 lncRNA upstream 291128 15547035 ~ 15553546 (-) False LOC122359617
XR_006252727.1 lncRNA upstream 291128 15547035 ~ 15553546 (-) True LOC122359617
TU18367 lncRNA upstream 296094 15552001 ~ 15553604 (-) False LOC122359617
TU18373 lncRNA upstream 303756 15559663 ~ 15564331 (-) True ccdc24
XR_006252281.1 lncRNA upstream 462721 15718628 ~ 15754422 (-) True LOC122356097
XM_043217260.1 mRNA downstream 18417 15223956 ~ 15229668 (-) True bfsp2
XM_043217889.1 mRNA downstream 34887 15193555 ~ 15213198 (-) True nrbp2a
XM_043258883.1 mRNA downstream 55089 15180965 ~ 15192996 (-) False puf60a
XM_043259972.1 mRNA upstream 307977 15563884 ~ 15579706 (-) False ccdc24
XM_043218396.1 mRNA upstream 329610 15585517 ~ 15674874 (-) True b4galt2
XM_043217212.1 mRNA upstream 420296 15676203 ~ 15682026 (-) True atp6v0b
XM_043221337.1 mRNA upstream 513858 15769765 ~ 15796297 (-) True ptch2
XM_043220432.1 mRNA upstream 547572 15803479 ~ 15833173 (-) False eif2b3
XR_006247858.1 other downstream 59292 15188656 ~ 15188793 (-) True LOC122328939
TU18236 other downstream 96313 15147204 ~ 15151772 (-) False smarcd3a
XR_006247859.1 other downstream 117370 15130599 ~ 15130715 (-) True LOC122328941
XR_006247132.1 other downstream 120594 15122525 ~ 15127491 (-) False faim2a
unassigned_transcript_207 other downstream 373703 14873076 ~ 14874382 (-) True LOC122360578
TU18553 other upstream 968872 16224779 ~ 16230221 (-) False pappa2
TU18714 other upstream 1415669 16671576 ~ 16673710 (-) True G12658
unassigned_transcript_208 other upstream 1544524 16800431 ~ 16801951 (-) True LOC122356638
TU18963 other upstream 1550354 16806261 ~ 16806738 (-) True G12839
TU18966 other upstream 1566718 16822625 ~ 16823073 (-) True G12841

Expression Profile