RNA id: XM_043256838.1


Basic Information

Item Value
RNA id XM_043256838.1
length 1968
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC122357442
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15260575 ~ 15262914 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTTAATAACTTCTGTGTAATGAAGGTGAACGTTATTTGCTCTGTTTCAGTTGGTGGTTAATTATagctttaaaatagaaagcgaTTAAAGGATTGACCCATGATGCAGCAAGCGTAATACTGAGCTTAAAACGACAAGCAAATCCCACTACCAATCCAATAGAAACTGGATTATTTCAACTGTTGCTCAACGCACGAGCAGTGCATATTATCCAAGGACTGGAAgctttaatttctcattttgttgattttaaccTGTTGTAACCTTTTAAATCATGGCTCTCACTTTTTTATTCGATGACCGTTTTCACCTCGATCTGAACTTTATGCGAACAAACAGCTACACGCTGTAGCAACAACCAATGAAACCGCAGCCAGCGGCCTCCCGCTTCATGCAATTGGATGCCGCGGCAGAATAGGAACGCCCACTTGCAGCCGTAAAGAAGAATAACGGGAAGATCTTCCGTCGATTTAACGTAAACGCTGCTACTTGAGAAATTGCTCATTCTGGAAGACAGTTCACGGGGAATGTGCACAAATGGCGCTTTCGCAGCTCGTTGCTACTTCTCATTGCAGGCGAAGAGAAAAGAGTTTGAAGTTTTTTCAGCTTGTGTCAGAAGATTTGCGAACTTGTGTCAGATAATAAGCCCCATCTAGTTTCGATGGAATATTCGCCTTTTTATCCAATGTATTTTTCGTTTTGCAGCGAAATACACGTTTAATGTAGCTTAAATGATAATTACTTTAATTGCTGTTTAATGTGCTTTTGATACGACTCAGTTATGGCAGGTGTTAATATGGAGACCTTTTCTCCGCTGACCGTGAAGGACTGTTGGGTCGTTGGGCTCGAGCGCTTCGCTGTCGGTGCTGCTGGAGAAGAAGAGGAGTTTTTCGAGATTAGGATCGAATGGTCTGAAAAAAGCATAACATATCTGCGAAGGAGATATTACGACATAGTAAAACTTGTCAAGAATTTAAGCATATCATTTCCGGACGACATAGAACGTTTGTCTCAATCAATGATGCTTAAGGcactACAGAGGATAAAAGAAGCAGAGGAAAACAATAACGTTAAAACGAGGTTGGATGAAGTGGAAAAATTACTAAGAAATATAATCAAAATGCCACAAAAGTTCTCTCACTCTGAGGCAGTTCTTACATTTTTCAAGACTTCTCCTCTTGACTACACTTTGAAAACCATGTATGAACCAGTCCAGCCTCTCTACCAGAGTCCTGTCACTGTAGCTGATGTAAGAAGGGCAAATGGGTTTTGTTTGGCCAATACAGAAACAGTTCTTTTTGATCCGTATTCACTAGCACAAGGAGCCGAAACATCAACAAAGTGCAGCACTGAGATTGAGTCCCAGATGTGGACTGGAATGAGAATTGCAAATGGGATCAGATGCATCAAGGAAACTGCTTCAAGCAATCTTGTCAAAGGCTTCATGACTACTGGTACCCCTGAAAGCAAAGACACAGACTGTCAACCGAAAATATCACAGATTACCACCAGCAATGTGACCTACCTCGACCTACAAGCCTGTGAGACAGACATTCTTGAATGACATAGGTCCCTCGACAATGTAATTACAGCTTTCTagtgtgaaataatattttttttaaaaaaggtttagtctgtaagaataatatttttgaaataaaataatgcatttctataGGATTTCTAAAGATTAactttaatatgaattaaaaatagtaaaatgaaTGTTCTTTGGTTCATTTGCTAGCATTTATAAATTGTCAATATGTTTACGTGATGACTGATATCTCAAGGTCACTGAATGAAGTCAaccaattataaaaaaatgtcatataaagTTGTTTTACATTGTATAGCGAAAACTTATGTCGATACCCATTATATTTGGTTGCCAATGTTGTAGGGTAATACGTTAcaaataatcagatttttttcaagtgattaataaagtaatacatTACTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18270 lncRNA upstream 7531 15252494 ~ 15253044 (+) True G12321
TU18267 lncRNA upstream 11326 15245312 ~ 15249249 (+) True LOC122357435
TU18172 lncRNA upstream 80321 15143946 ~ 15180254 (+) False G12255
XR_006252526.1 lncRNA downstream 235610 15498524 ~ 15500314 (+) True LOC122357737
TU18398 lncRNA downstream 413289 15676203 ~ 15678446 (+) True G12419
TU18414 lncRNA downstream 460172 15723086 ~ 15804921 (+) True G12432
TU18415 lncRNA downstream 468905 15731819 ~ 15741601 (+) False LOC122356092
XR_006252280.1 lncRNA downstream 468916 15731830 ~ 15742798 (+) True LOC122356092
XM_043256794.1 mRNA upstream 140 15256044 ~ 15260435 (+) True si:dkey-154p10.3
XM_043256801.1 mRNA upstream 140 15257021 ~ 15260435 (+) False si:dkey-154p10.3
XM_043256825.1 mRNA upstream 14259 15241797 ~ 15246316 (+) False LOC122357435
XM_043217271.1 mRNA upstream 19881 15238481 ~ 15240694 (+) True ccr9a
XM_043217249.1 mRNA upstream 25324 15230016 ~ 15235251 (+) True zgc:136930
XM_043254484.1 mRNA downstream 4215 15267129 ~ 15269496 (+) True tmem53
XM_043218133.1 mRNA downstream 97840 15360754 ~ 15471835 (+) False rnf220a
XM_043218174.1 mRNA downstream 97842 15360756 ~ 15472750 (+) True rnf220a
XM_043218124.1 mRNA downstream 97842 15360756 ~ 15471835 (+) False rnf220a
XM_043218141.1 mRNA downstream 97842 15360756 ~ 15471835 (+) False rnf220a
XR_006252462.1 other upstream 477598 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 477871 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1080960 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1080960 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2387430 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1004129 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1769405 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2099331 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2303927 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2344338 17607252 ~ 17608092 (+) True G13111

Expression Profile