RNA id: XM_043256906.1


Basic Information

Item Value
RNA id XM_043256906.1
length 1980
RNA type mRNA
GC content 0.49
exon number 2
gene id ptger4c
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7388418 ~ 7391035 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTCTTTTGCAAAATAATGCAGTTAGGCATGCACCGAATGGAACTTGCTATAAGCCACACACCTGCGTTTACTATTAGCTATTTCTGTCTGCATGGGATTGAAGGTGACGTCACTCTTGAAGCTGACATCACACAGTGGGTAGAGGAGCTGTGGCTTTCTATAAAAGCAGTGACACCTATGAGTCCACCCGAGGCCACAGAGCGATGCGCGTAAACCGCGCGTccgtttattatttatttggtaaactcAAGCACTTATGGACAAGAGAAGTATAGAGAAGTAGAGAAGTATACTTGTCAGACATGAATAATTCGCTGCTGAACGTGTCAGAAGCCAACAACTCCTCTCGTGCCTTGAGTCTAGACTACCGCTCTCTCATCACTTCGGCCAGTATGTTTGGCGTCGGGGTCCTCGGAAACCTCGTGGCGATCGTGGTGCTTTGCATCTCCAAAAAGGAGCAGAAGGAGACCACCTTCTACACTCTGGTGTGCGGGATGGCTATCACGGACCTGCTGGGCACCTGTTTCACCAGTCCGGTGGTCATCGCCACATACATCGCGGGCAGGTGGCCGGGCGGTGCGCTGCTGTGCcatttcttctccttctccatGCTGTTCTTCGGATCGGCCGGCATGTCTATTCTGTGCGCAATGTCGGTGGAGAGGTACCTGGCCATAAACCACGCGTACTTCTACTCGCAGCACGTGGACCGGGCTATGGCTCGGTTAGCGCTGATGGCGACGTACCTGGCCAATATCGTGCTGTGCATCTTGCCCAGTTTTGGTTTCGGAAAGCACACGAGACACTTTCCCGGAACTTGGTGCTTCTTGGACTGGCGCGCCATGGACTCCATCGGCGCCTCGTACACGTTTCTGTACGGAGGGTTCATGCTGCTGTTGATCGCCGTTACCGTCCTGTGTAATTTCGCCGTGTGCCGTTCACTGGTCGGGATGAGCAAGATGAGTCGCATGGTGAGGGCAGAGGTACCCGGACACACAGGCTCCAAGCGCAGGTTCAGATTAACATCTGCAGCGGAGATCCAGATGTTCTGGCTGTTGATTTTCATGACCATTGTGTTCCTGATATGCTCCATCCCTTTAGTGGTGCGCATCTTTGTCAACCAGCTGTACGATCCAGCTTATATATCATCAGGCAAAAGTCCAGATTATCGCAGTGATCTCTTGGCCATTAGATTTGCCTCCTTCAACCCTATCCTGGATCCATGGGTGTATATTCTGTGCAGGAAAAACCTACTAACCAAAAGCTGCACACAACTGAAACGCACCATCAGACTGAGGAAAGGGGATCGTAGTCGTGTTTTGGGTTGGATGGACGGTCAGCACTCGCCTCCGTCGTTTGCTCAAAGCAATTGCACAAGTTACGCGTCATTGCGCACGGCCATCTGTAGAAACGACGTGGGAAAACAGAGCTGTATGAACACTAAGTCTTACGTGGACTTAACCCTTCGCCAGGCATGGGACTTTGATACGGCTCTGGCTGAGTTTCATCCCTTCAGCGTCGACCAGAACGGCGTCATGGGGTTTGATGAAGATGAAGCGGCATCAAGTCCCAAACTCCTCGCTAAGACTGTTGTGGTGCTACCGGTCGCTCAGATAATAGAAAATAAGGCTGAAATAGTAACCTGCACTTTTAGTACACCAAGTTCATGCGTATCAGAAAAGTGCTTGAGACAATGACCCCGCTGCCAGTCCAGATTAACTGATTAATGCACtgtgacaaaaagaaaaagactttTTCTCTTGTCTTATTTCACATTCACAAATAATTCTGTGAATTCGCTTTATTTAGATCTAGAATGATCCAATTTTAGGATTAAACCATGAGAGGAGACACTTGTACGTCTATGTTTTGTCAGAtaacatgtttgtgtttaacGTGTGGACATGTTGCTTCCTTACCATGCTGCATGCTGGGTCGTACTTGACTGTGACTCGTAAAActgtgaataatttattaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14967 lncRNA upstream 88339 7285678 ~ 7300079 (+) False gng12a
TU14911 lncRNA upstream 177480 7210738 ~ 7210938 (+) True G10021
TU14910 lncRNA upstream 178484 7206507 ~ 7209934 (+) True G10020
TU14903 lncRNA upstream 188881 7197090 ~ 7199537 (+) True G10013
TU14902 lncRNA upstream 192018 7189655 ~ 7196400 (+) True G10012
TU15018 lncRNA downstream 29407 7420442 ~ 7421878 (+) True G10094
TU15044 lncRNA downstream 90595 7481630 ~ 7555541 (+) True G10112
TU15033 lncRNA downstream 113587 7504622 ~ 7582245 (+) True G10108
TU15035 lncRNA downstream 113587 7504622 ~ 7582245 (+) False G10108
TU15039 lncRNA downstream 113587 7504622 ~ 7582245 (+) False G10108
XM_043256194.1 mRNA upstream 41763 7340271 ~ 7346655 (+) False dmbx1a
XM_043256186.1 mRNA upstream 41763 7340271 ~ 7346655 (+) True dmbx1a
XM_043216752.1 mRNA upstream 88317 7285670 ~ 7300101 (+) True gng12a
XM_043216746.1 mRNA upstream 88317 7297986 ~ 7300101 (+) False gng12a
XM_043257685.1 mRNA upstream 104608 7269715 ~ 7283810 (+) True wls
XM_043218822.1 mRNA downstream 924096 8315131 ~ 8318467 (+) True glula
XM_043263850.1 mRNA downstream 982203 8373238 ~ 8382443 (+) False elovl1a
XM_043263841.1 mRNA downstream 986257 8377292 ~ 8382443 (+) True elovl1a
XM_043263798.1 mRNA downstream 995842 8386877 ~ 8403214 (+) True cc2d1b
XM_043263812.1 mRNA downstream 995842 8386877 ~ 8403214 (+) False cc2d1b
TU14783 other upstream 401299 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 696043 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 697639 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 1020464 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 1165899 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 114556 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 715830 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1771576 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2355559 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2520593 9911628 ~ 9916861 (+) True znf414

Expression Profile