RNA id: XM_043257520.1


Basic Information

Item Value
RNA id XM_043257520.1
length 2475
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC122357878
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20763531 ~ 20768201 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTATCTGTGAGTGCGAGCTTTACTATGGCAGAATCCAGTATTTCAGCGGCTCAGGATCAGTTAAACTGTTCAATCTGTCTGAATCTCCTGAAGGATCCAGTGAAAATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTACAGACTGCTGGAATGATCAGGATGATCAGAAGAAGGTCTACAGCTGCCCTCAGTGCAGACAGACCTTTACTCCAAGACCTGTTTTAGGTAACAACACCATGCTGGCTGAAGTGGAGGTTAATTTGAGGAAGAGAAAACTACAAGAAGCTAGTGTTGATCATTGTGGTGAATCTGGAGATGTGGAGTGTGACGTCTGTACTGGGGATAAAAACAAAGCCATCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCAAAATCATTTTGAACGTCATGAAGAATTTCACCCAGGAAAGCGGCACAAAGTGACAAATGCCACTAGGAGACTGCAAGAGATGATCTGCCCTCAGCACGATAAACTGCTGGAGATTTTCTGTCGTACTGATCAGCACTGTATATGTTATTTGTGTATGTTGGATGAACACAAAAACCATGACCATGTATCAGCTGCAGCAGAGAGGACTGAAAAACAGacACAATTGGAAGAGATGCAAAGAAAATTCCAGCAGAGAATCCAGGAGAGACAAAAGGAGTTTGAGGAGCTGAGAAAGGCTGTAGAGTCATACAAGCGCTCTGCACAGACAGCAGTGGAGGACAGTGAGAGGATCTTTACTGAGCTGATCCTCTCCATTGAGAGAAGTCGATCTGAGGTGAAACAGTTGATCAGAGATCAGGAGAAGGCTGCAGTGAGTCGAGCTGAAGAACTATTAGAGCAACTGAAAAAGGAGATAAACGATTTGAGGACGAGAGATACTGAGGTGGACAAGCTTTCACACACAGACCTTCACATCCATTTCCTCCAGAGTTTCCAGTCTATCTCTGTCCCTCTTGGATCTAAAGACTCGGTCAATATAATTTTCAGTTCTCATAACACTTTTGATGATGTTGAAAAATCTGTGTCTCATCTGAGAGAAGAATTGGAGCATTTCTGCAGAGAGGAAatacaaaaacttcaaaataaagCAAAATTTATTGAGATTATTCCCATCCCTGAATGCAAGACAAGGGACGAGTTTTTGCAGTATTTCGTCCAGTTCACAGTGGATTCAAACACAGTTCATAAAAACCTCCATCTGTCAGAAGGAAACAGAGTAATTACTTACACTGACACAGACCAGCCATaccctgatcatccagacagatttgattcTCTGCAGCAagtgttgtgtagagagagcgtgtgtggaCGCTCTTACTGGGAGGTGGAGTGGAGTGGTGAAGTGGAAATATCAGTCTCATACAAGAGCATCAACAGGAAGACATGgaataatgataatgattacAACAGTGATGGTTATGACAAGTCTGATTTTGGACTTAGTGATCAGTCCTGGTGTTTGTTCTGCTCTGACTCCAGCTACTCGTTCTGGCACGATAACGAAATGATTAAACTCCCTGAAGTCTCCAGCTCGTCTAGaataggagtgtatgtggatcacggtgcaggaactctgtccttctacagcgtctctgacacaatgaCCCTCATTCACagagtccagaccacattcactcagccTCTCTATGCTGGGTTTGGGGTTTATAGTATATCAGCTGTGAAACTGATATCAAAATAGGCTACACACACAGAATTGTCAAAATAATACTGTCAAACagctttaaaggggtcatatgatgctaaaaaaatgctttatttggtGTATCCGGTGTAACGCAAGGTGTTTATGcggttttaaatgtattttcaacatactgtacattattgtttatcctctaagccccgccttcccTCCATTTGTACAAAACAAGCGcactgtgctctgattggccagctatccagtgcataGTAATTGGCTGAATAGTTCAATGTTATTAAAACATGATGCCGTGTCCCAGCGCTATGGCTCCaaacaaatgaggcatttgttgcaacAATtgggacataattactgattatagtGTCTTACTACTGTCTTTTTACATCGCGTctcgtaaacataacaccatgtgaaatgacaaacaacaagcactgcCCTTCATTGCTCAAAACTTGTgcttgaatagtaagtagcaggttcttttaataagaaaacataacttacTTCCAAGTTGTaagtcagaagcgccagactgtccttgcaaagTTGGAATTGTATCGGTTCAACATATTGCATATTCAGATAAAAATCAATATCAGCTCATTATCAttgtcacacatgtggactcctttgttgttgtttttgtcttatgCCATGTGTTCGGTGTGACctcatttctgttaattatcttagtgtgttcacctgtgtcttgttaatttagtcaattactttttgtatttattccctgtgtgtttcagttcagtttgtccgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20511 lncRNA upstream 145871 20616158 ~ 20617660 (+) True G13909
TU20455 lncRNA upstream 168438 20591718 ~ 20595093 (+) False G13863
TU20456 lncRNA upstream 168438 20591718 ~ 20595093 (+) True G13863
TU20494 lncRNA upstream 230793 20532212 ~ 20532738 (+) True G13896
TU20475 lncRNA upstream 260192 20501795 ~ 20503339 (+) False G13880
TU20595 lncRNA downstream 131363 20899564 ~ 20946266 (+) True G13964
TU20620 lncRNA downstream 187734 20955935 ~ 20957136 (+) True G13980
TU20610 lncRNA downstream 193492 20961693 ~ 20966228 (+) True G13976
TU20640 lncRNA downstream 379979 21148180 ~ 21148512 (+) True G13992
TU20641 lncRNA downstream 381020 21149221 ~ 21150007 (+) True G13993
XM_043257508.1 mRNA upstream 9555 20750836 ~ 20753976 (+) True LOC122357870
XM_043257555.1 mRNA upstream 51379 20706964 ~ 20712152 (+) True march11
XM_043260707.1 mRNA upstream 157598 20596332 ~ 20605933 (+) False LOC122360253
XM_043260698.1 mRNA upstream 161470 20596347 ~ 20602061 (+) True LOC122360253
XM_043257696.1 mRNA upstream 174956 20578426 ~ 20588575 (+) True tmem71
XM_043257543.1 mRNA downstream 843 20769044 ~ 20771030 (+) True LOC122357891
XM_043257497.1 mRNA downstream 4335 20772536 ~ 20778053 (+) True LOC122357864
XM_043257567.1 mRNA downstream 10513 20778714 ~ 20791858 (+) True basp1
XM_043263535.1 mRNA downstream 86776 20854977 ~ 20887544 (+) True efr3a
XM_043263525.1 mRNA downstream 86776 20854977 ~ 20887544 (+) False efr3a
TU20478 other upstream 259308 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 278313 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 290915 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 334186 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 2946767 17784179 ~ 17816764 (+) True G13137
TU20649 other downstream 395741 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 396096 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 539206 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 569481 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 569481 21337682 ~ 21361708 (+) False G14211

Expression Profile