RNA id: XM_043257555.1


Basic Information

Item Value
RNA id XM_043257555.1
length 1861
RNA type mRNA
GC content 0.55
exon number 4
gene id march11
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20706964 ~ 20712152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATGACCGTCGTTTTATCCACTGGGTAAAtacggttaccatggtaaacctCGTAAAGGGCAATAGGCGCAAAGAGCGCGTGGCTCCGGGGAGGGTGGCTCGCGAGTCCATCACAGAGCAGTTACCCGAACGGCTTTCCCGTCAGAAACGGCTTCGTCGCTAAATCTTACTCGCTCTCGCACCACTCACGCACTCGACCGGTACATCTGATTCATTTGTGAAGGTTGGCTGTGAGGTTATGCGTGTTTCGTGCCTTCACTGCTCGGTGTTCCAGCACCGCGCCCGGATGGAAATGTGTCTTCCGGGGAAAAGCTGCTTTCAGCCAACGAGACAGCGAGCACAACGCGCCGCACAGCCTGGTCATCTGCAACTTTCAACAGAAGCGAGTGCCTTTCTGAGAACGCGTGCGGTTTGAGACGCAGATCTATGGCAAGACCTGTGCGTCCCGGAGGGGAGAAGAGAGGCCCGTAAGAGCTCAAACCCCTAATTTTGCTATTTCATTCTGATCCCGGTGCCGTCATTCATGGATGTGCACGCAGAGGCGGGTCCGTTGCACGTGCAGACGGTGGATGAGCCGCCGGGAGGCGCCACCGTTACCGCCGCCGCCGCAAAGCTTCAGGTCCAAACGGTGCCGGAGAGCGACGGCGAGCTCAGCGAGGTGGAGTCGGGCGCTGGAGCTCAAACACCGGCGACGGGTGACCCGATCACAGAGATCGAGAGCGAGGAGGGCGCGCAGGCAGGGACGGACACGCCGGCCGAGGACATCGTCGGGCAGAGCGCGGGGAAAACGGAAACGGTGGGATCCAGTTGCAGCAACGAGAGCTGCATCCCGACTCCAGGCTGTCGGATCTGCTTTCAAGGAGCCGAGCAGGGGGAGCTGCTGAGCCCGTGCCGCTGTGCCGGATCTGTCCGACATGCTCATCAGCAGTGTCTGCTCAAGTGGATCAGTGAGAAGGGCTCCTGGAGCTGTGAACTCTGCAACTATAGATTCAACATCCTGCCTATACATATCAAACCACCACAACAGTGGCAGACCGTCACCATGACTCTGGTGGAGAAGGTTCAGGTTATTGCAGTGTTGCTGGGTGGCATCTTCCTGTTGGCCAGTGTATCATGGCTGCTGTGGTCAGCGCTGAGCCCAGAGGCGCTATGGCAACGCAGTGACATCCTGTTCCAGATCTGTTACGGGATGTATGCAGTCATGGACCTTGTGTGTATCGgtctGATTGTTCATGAAGGTGGTGCTGTGTACAATGTGCTGATGCGTTGGCGGGCTGTTAATCTCTTCTGGGACGTCCAGAACTACGATAAAAACCGAGACCTTGAGAACACACACAGCCCACACCGTAACCTGTGGCTgcctctcacaaacacacatacagtctcTAACACCCACTCACAAACCACCCGACTGGTGTCATCGCCTCGATGCCCTCTTCGCCTCCTCTCTATGTGCCTGaatgtgacctctgacctctcccCGCAGGAGCAAGGCTCAGGCGAGCTAGTGGTTAGGGTCACGTCTGTTTGACATCAAGTCAAACTCATTCAGGGACCAATCAAACATGTGGGAGTGGCTGACTAGGGGGAGGAGCCTCCGTGTTGGGAGGAGCCTTACTTGAAGAGCACTTTAGAAGACGCAAAAACTGAAATGGATAGAAGCGAACAGGTGTTTCCAGCCTGGAAGTTCTGGGTTAGCCTTTGAACCTCGAAGCAAGACTGCAAAGCTCTCCGCACACAGACttacaatgcacaaaaaatgtattactgctGTTAGACgaatgaatgtttgttttaaaccaaCCGTTTTTATGTTCGGGTTTTTAACCATTTCAGCACTGATAAACTACAACTTATCACA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10659 MARCH4_9_11; E3 ubiquitin-protein ligase MARCH4/9/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20511 lncRNA upstream 89304 20616158 ~ 20617660 (+) True G13909
TU20455 lncRNA upstream 111871 20591718 ~ 20595093 (+) False G13863
TU20456 lncRNA upstream 111871 20591718 ~ 20595093 (+) True G13863
TU20494 lncRNA upstream 174226 20532212 ~ 20532738 (+) True G13896
TU20474 lncRNA upstream 203625 20492928 ~ 20503339 (+) False G13880
TU20595 lncRNA downstream 187412 20899564 ~ 20946266 (+) True G13964
TU20620 lncRNA downstream 243783 20955935 ~ 20957136 (+) True G13980
TU20610 lncRNA downstream 249541 20961693 ~ 20966228 (+) True G13976
TU20640 lncRNA downstream 436028 21148180 ~ 21148512 (+) True G13992
TU20641 lncRNA downstream 437069 21149221 ~ 21150007 (+) True G13993
XM_043260707.1 mRNA upstream 101031 20596332 ~ 20605933 (+) False LOC122360253
XM_043260698.1 mRNA upstream 104903 20596347 ~ 20602061 (+) True LOC122360253
XM_043257696.1 mRNA upstream 118389 20578426 ~ 20588575 (+) True tmem71
XM_043254491.1 mRNA upstream 129315 20572747 ~ 20577649 (+) True ift57
XM_043253811.1 mRNA upstream 135043 20568457 ~ 20571921 (+) True cavin4a
XM_043257508.1 mRNA downstream 38684 20750836 ~ 20753976 (+) True LOC122357870
XM_043257520.1 mRNA downstream 51379 20763531 ~ 20768201 (+) True LOC122357878
XM_043257529.1 mRNA downstream 51379 20763531 ~ 20768201 (+) False LOC122357878
XM_043257543.1 mRNA downstream 56892 20769044 ~ 20771030 (+) True LOC122357891
XM_043257497.1 mRNA downstream 60384 20772536 ~ 20778053 (+) True LOC122357864
TU20478 other upstream 202741 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 221746 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 234348 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 277619 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 2890200 17784179 ~ 17816764 (+) True G13137
TU20649 other downstream 451790 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 452145 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 595255 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 625530 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 625530 21337682 ~ 21361708 (+) False G14211

Expression Profile