RNA id: XM_043257663.1


Basic Information

Item Value
RNA id XM_043257663.1
length 2925
RNA type mRNA
GC content 0.47
exon number 18
gene id scinlb
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7257164 ~ 7268405 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCGGTTCATAACAAACGATAATGTTGTTAACCTATTGAACATAAGGAGCAGCTTTCAGATTGTTTATAATAATGGTCTTGTTGTAAATAATGTAGGTTTCttgcaaatggaaaaaaagcccGTTTGGCAGTGAAGAATAAGCAATGCAAAGTTACAATTACGCTTAATTGGAATTGACAAAACGCAAGCTTTTAGAGTCGCACGTTATGCAAAGGCTGTGTGAAGACCTGACACTCCCTCCAGTTAAATCGCGGATTCAGTAAAGAAAGCCTACAACGcgtctctttttctcttgcACCGACAGCTTTCCGCTTCATCCACGATCTCTCACTATGGTGTCCCATAAGGAGTTTGAGACTGCAGGGAAAGCTGCTGGTCTGCAGATATGGCGCATTGAGAACATGGACCTGAAGCCAGTGCCTAAGAATCTCTATGGCAACTTCTATACGGGTGACGCCTATCTTCTTCTGTACACCACCAGCGCACCTTCATACTTTATACACATGTGGATGGGGAATGAGTGTTCTCAAGATGAAAGTGGAGCTGCAGCTATCTTCGCCACACAGCTGGATGACTTTCTAGGGGGTGGTCCAGTTCAGTTCCGTGAGGTCCAAAACAACGAGTCGCTCACCTTCTTGGGCTACTTTAAGTCTGGCATCAAGTATAAGCAAGGTGGGGTCGCGTCTGGCTTCCATCACGTGTTGACCAATGACGTGGATGTGAAGCGTCTCCTGCACATCAAGGGCAGGAGGGCCATCAGAGCCACTGAGGTGGAGATGTCCTGGAGCAGCTTCAACAAAGGAGACTGCTTTATTGTAGACTTGGGGAAGGACATTTATCAGTGGTGTGGCAGTGACTGCAATCGTTTTGAACGTCTAAAGGCCTCCCAGTTGGCCATTGATATCCGGGACAATGAGAGGAACGGCAGGGCCAAGCTGATCATGGTGGAAGATGGGGCTGAGCCAGACGCTTTGTCTAAAGTTCTTGGGCCCAAATCCAGCATCGCCCCAGCAACTCCTGATGATGAGGAAGTGGACACCTCCAACAAGAAGAAGGCAGCAATGTACATGatTTCAGATGCCTCTGGCTCCATGAAAACATCTATTGTGGCCCAGTCTAGCCCGTTCAAGCAGGAGATGCTCTCCCTAGATGAGTGCTACATCCTGGACAACGGAGTTGATaagaatgtgtttgtttggaaaGGACCAAATGCAAACACATCTGAACGCAAAGCGGCTATGAAAGCAGCAGAGCAGTTCATCAAAGAGAAGAACTACTCTAGTAAAACACAGATCCAGGTGCTGCCTGCAGGGGGCGAGACCACCCTGTTCAAGCAGTTCTTCTCTAACTGGAAGGACAAGGACCAAACCACTGGTCCTACCAAGGCCTACACCATCGGCAAAATAGCCCGTGTGGAGCAGATTCCTTTCGATGCCTCCAGCCTCCATAATAACAAGGCCATGGCAGCCCAACACAACATGGTTGATGATGGTTCTGGAAAAGTTCAGATCTGGCGCGTGGAGGGAGGGGAGCGTGTCCCGGTGAATCCCTCTACTTACGGGCAGTTCTTTGGGGGAGACTGTTACCTGATCCTGTACAGTTATAAACAGGGAAGTAGGGAGCAGCATATCATCTACACCTGGCAGGGCCTGAAGAGCACTCAGGATGAGCTGGCGGCGTCTGCCTTCCTCACGGTCCAGCTGGATGACTCCATGGGAGGAGCTCCAGTTCAGGTGCGAGTAACACAAGGTCAAGAACCTCCCCATCTGATGAGTCTGTTCAAGGGCAAACCTATGATCATCCATAGTGGAGGGACGTCCCGCAAGGATGGCCAGACCAAGACAGGCAGCACTCGCCTCTTCCACATCCGACAGAGCTCTTCTAGAGCCACAAGGGCTGTCGAGGTTGAACCATCTGCATCCAACTTAAACACCAATGACGTATTTGTGCTGAAGTCGCcagattgtgtgtttgtgtggaaagGCGCAGGTGCCAGCGATGAAGAAATGGTTGCTGCGAAGTATGTTGTAAGTGTAGTGGGAGGAAAACCCACTGACGTGGCCGAGGGTAAAGAACCAGCTGGATTCTGGTCAGCTCTGGGCGGGAAGAAGGAGTACCAGACATCTAAAACTCTACGAAATATGGTCAAACCACCACGTCTGTTCGGCTGCTCCAATAAGACAGGTCGCCTAATGGTTGAGGAAGTTCCTGGAGACTTCACTCAGTCAGACTTGGCTACTGATGATGTCATGTTACTTGACACTTGGGATCAGATCTTCCTTTGGATTGGTAAAGAAGCCAATGAGGTTGAAAAAACTGAGTCACCAAAAATAGCTAAGGACTATGTGGACTCTGATCCTTCTGGACGCCGTGGACTGCCCATCACAACCATAAAGCAGGGGGCTGAGCCTCCGATCTTCACAGGCTGGTTCCAGGCTTGGGACTCACATATGTGGGACACTGACCCTCTGGAGAGAATCCGAGCTcgcttttaaacacaaaactgtttCCTCTTCTTTTCCTTGTAAAAGCACTTATTGTTTCTGTGTAATAAACTGCAACTTTCCGAGGTTTTATGTAATCTAAACATTGGTGAAATGCCCATCTCGCATAAAAGtccaagttttatttttgattttgggagTGTGAAGCTTTGTTCAAGCAGTACCAGCTGtcataatagaaaaaaaatctaccaaAATGATTATCACTCATAATAATGATATGAGACATAAGGTATGGTTCCTGTTaccctgtttttattatttctgccATTATGGCTTTCAAACATGTTAGCGTTATAAAATATGTGGCAAACTTCGTGACTATTGTTTTTACACACAAGCCATTGATATATGTTCGGCTTGTACTGTGATGGTTTTTATGTCAGACTTTAATAAACTGAGATTTTGAGAAAgtgaaa

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K05768 GSN; gelsolin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14911 lncRNA upstream 46226 7210738 ~ 7210938 (+) True G10021
TU14910 lncRNA upstream 47230 7206507 ~ 7209934 (+) True G10020
TU14903 lncRNA upstream 57627 7197090 ~ 7199537 (+) True G10013
TU14902 lncRNA upstream 60764 7189655 ~ 7196400 (+) True G10012
TU14819 lncRNA upstream 156503 7099628 ~ 7100661 (+) False lrrc53
TU14967 lncRNA downstream 17273 7285678 ~ 7300079 (+) False gng12a
TU15018 lncRNA downstream 152037 7420442 ~ 7421878 (+) True G10094
TU15044 lncRNA downstream 213225 7481630 ~ 7555541 (+) True G10112
TU15033 lncRNA downstream 236217 7504622 ~ 7582245 (+) True G10108
TU15035 lncRNA downstream 236217 7504622 ~ 7582245 (+) False G10108
XM_043223526.1 mRNA upstream 2593 7236939 ~ 7254571 (+) True ccdc18
XM_043223534.1 mRNA upstream 2593 7236939 ~ 7254571 (+) False ccdc18
XM_043223539.1 mRNA upstream 2593 7237353 ~ 7254571 (+) False ccdc18
XM_043224143.1 mRNA upstream 21051 7225090 ~ 7236113 (+) True mtf2
XM_043221812.1 mRNA upstream 50762 7203301 ~ 7206402 (+) True rpl5a
XM_043257685.1 mRNA downstream 1310 7269715 ~ 7283810 (+) True wls
XM_043216752.1 mRNA downstream 17265 7285670 ~ 7300101 (+) True gng12a
XM_043216746.1 mRNA downstream 29581 7297986 ~ 7300101 (+) False gng12a
XM_043256194.1 mRNA downstream 71866 7340271 ~ 7346655 (+) False dmbx1a
XM_043256186.1 mRNA downstream 71866 7340271 ~ 7346655 (+) True dmbx1a
TU14783 other upstream 270045 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 564789 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 566385 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 889210 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 1034645 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 237186 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 838460 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1894206 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2478189 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2643223 9911628 ~ 9916861 (+) True znf414

Expression Profile