RNA id: XM_043257999.1


Basic Information

Item Value
RNA id XM_043257999.1
length 1806
RNA type mRNA
GC content 0.45
exon number 7
gene id toe1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12650571 ~ 12653462 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGCGATAGAACTTGGAAGTGTGAAAAACAGATTTACGATTTTTAgggagtaaaaaaaacaagacccATGTAACGACGAAAACACGCATATTATAGATATGTTcgattataatttgttttactcTGCGAGAtgacattttcatcatttcagcattttgttttacttaCACCAGCGGAGACGTAGATAGCTTACTTAAGCGGTTAGAGGAAAGTCTTGGGTACAGTGAAGTCCCCGTGTTTCGCAGATGTTAATTCATCTGGTgaatttgtaaaatgtcatcCTCAATGATAGTCCCGGTTATAGATGTGCAGGGAAACAACTTTAAGGAGTTGTGGGCAGCGATGGTCATAGCCATTAAAACATCTTCATTCATCGCCATTGATACGGAACTGAGTGGTCTTGGATCAAGGAAAGCTCTTCTAGCCGAATCCATAGAGGACAGATACAAAGCCATATGTCATGCAGCTCGATCGCGGTCCATACTTTCATTGGGCTTTGCTTGTTATAAAAAGCTTGACAACAAAGCGGACAGCACGTACCTGGTCCAGGTTTACAATCTGACCTTGCTTTGTTCAGAGGAGTACATCATTGAACCTCAGTCAGTGCAGTTTCTTGTACAACACGGATTTGACTTCAACAAGCAATATGCTGAAGGCATTTCTTATTATAAGGGTAACGATAAAGGAGGTGATGCCCACGGGGTAAACATGCGCTCCTTGTTCGTAGAACTGCTTAGGGCCAACAAGCCCTTAGTGGTTCATAATGGTCTGATAGACATGGTCTTCTTGTACCAATGCTTCTATGCCCATCTTCCCGATCGACTGGGCACCTTCATTGCCGATCTATCCCAGATGTTTCCATCAGGCATCTATGACACAAAGTACGCAACGGAGTATGAGCTGCGGTTCTCGGCCTCTTACCTGGAATACGCCTATAAGAAGTGTAAGTTGGAAAACGGCAAAGCCATTGCCGGAGATGGCAATAGGAGTCATGTGTTCCTGGAGTTTTGTAAATACACAGGCAACATGCAGAGCTACATAGACTACAGGCCGTGCTTGGACAACCAGAATCAGGACGGTGCCCTCAACATTTGCGTTCAGTTCTCTGCGTATGGATGGTGTCCTAATGGCTCTCAGTGCTCCTTGTCACATGACACAGACCTTATAATCCAGCATGATGAGAAGATCAGAGAAgacaagaggaagaagaggaagcgtaagaacaaaaaaaaaggttctcaAGGGCCCTCTGAGACATGCGGTTCCCCACAGGGCAAAAGGTCACACTTTGAAGAGACTGAGCTGGACCAGGCAGTGCCTGTATCTGAACAAGCGCTCCCTGAACATCAGGAGAAGACCGCAAGTTCTGAGCCAACAGATGCCACCCATGCGTTTGAACCTGGGAAAGCAGCCAGCACGAATGAAAATGAGGAATCCCAGCCAGAAGCATCTTCCGAAGCTCCCGTTAGACCAAAAGGGAAGAAAGCGGAAGGAGGAACTCACCGAGCAGGGTTTGATGCTTTCATGACCGGCTATATTTTTGCCTACGCCAGAAATCTGACTGAAAGCGCAGAAGAATCCAGCACTGCTCCTCTCATCCCTGCATGTCTCAATAAGCTCTTCCTCAGTGGCAAGTCTGTTCCTCTACATGTAGCCAAAAGCACCTTCTCCAAGTCTTCAAAGGCTCATGTGCACAAGATGGACTACATCTGGGGAAAAAGCACTGCTGTAAAATCTGAAGGAACTGCATAGAAAGCTTTGATTTTAGATTTCATTTcttgtcaaataaaatgtatgtttctgtc

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13202 TOE1; target of EGR1 protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17176 lncRNA downstream 102056 12548205 ~ 12548515 (-) True G11591
TU17161 lncRNA downstream 162486 12487054 ~ 12488085 (-) True G11576
TU17149 lncRNA downstream 211563 12374651 ~ 12439008 (-) True G11568
TU17131 lncRNA downstream 276236 12372572 ~ 12374335 (-) True G11559
TU17133 lncRNA downstream 283706 12361651 ~ 12366865 (-) True G11561
TU17287 lncRNA upstream 4288 12657750 ~ 12658119 (-) True G11668
TU17292 lncRNA upstream 4832 12658294 ~ 12661872 (-) True G11669
TU17301 lncRNA upstream 42018 12695480 ~ 12695679 (-) True G11676
XR_006253123.1 lncRNA upstream 43454 12696916 ~ 12700309 (-) True LOC122362470
TU17312 lncRNA upstream 136062 12789524 ~ 12791035 (-) False xkr4
XM_043258005.1 mRNA downstream 19609 12621808 ~ 12630962 (-) True tmx3a
XM_043224163.1 mRNA downstream 29155 12616040 ~ 12621416 (-) True dsela
XM_043217961.1 mRNA downstream 260590 12381141 ~ 12389981 (-) False si:dkey-181m9.8
XM_043260614.1 mRNA upstream 92350 12745812 ~ 12753141 (-) True urod
XM_043260600.1 mRNA upstream 100109 12753571 ~ 12764691 (-) True lyn
XM_043224703.1 mRNA upstream 111693 12765155 ~ 12785014 (-) False tgs1
XM_043224694.1 mRNA upstream 111693 12765155 ~ 12785014 (-) True tgs1
XM_043224712.1 mRNA upstream 111693 12765155 ~ 12785013 (-) False tgs1
TU16802 other downstream 1073055 11576391 ~ 11577516 (-) True G11317
TU16758 other downstream 1197651 11449535 ~ 11452920 (-) False crsp7
TU16759 other downstream 1201148 11448758 ~ 11449423 (-) False crsp7
TU16731 other downstream 1205458 11442418 ~ 11445113 (-) False cnn2
XR_006253161.1 other downstream 1244874 11382106 ~ 11405697 (-) False kcnn1a
TU17467 other upstream 900390 13553852 ~ 13558004 (-) False LOC122328470
TU17469 other upstream 900390 13553852 ~ 13558004 (-) False LOC122328470
TU17470 other upstream 900390 13553852 ~ 13554619 (-) False LOC122328470
TU17472 other upstream 905760 13559222 ~ 13560265 (-) False LOC122328470
TU17473 other upstream 906867 13560329 ~ 13564329 (-) False LOC122328470

Expression Profile