RNA id: XM_043258093.1


Basic Information

Item Value
RNA id XM_043258093.1
length 2993
RNA type mRNA
GC content 0.49
exon number 5
gene id nr2f6a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11360339 ~ 11367651 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacacacacacacacacacacactccctcacaGGCACGCGGCGCGCGCGCTCTACTGGACACTGGCTCGCGCTATCTCTTGTCCTCTTCAAGCCAGCGCGACTTCTGCACTTCCAAAAGCAGACATCTAAACAACGCATTACTCGAGGGCTGACTAAAAGAAGCTGGAGCGAAAAAAGTGAATATGGTCGGCCGAGGAGGCAAAACAACGTGCGCAGCCCACTTTCCGAAGACCAAAGTTGACTGACTCAGACTCGTGACTCATGACTCGCGTCTGAGCCTAAATGTGTCAGACGAAGCTGTGGACAATTACCAGATATAGAGGCCTTCGTATCTTCTCGTTTTAGAAAGCACAGCTGTCAAAAAAGGGGGTCGACTGAAACTGTCTGTGCCGACAGCACGTTTGGGAGTATTTTTCCTCCTCGGTTGTGCTGAGAACTAAGCGATGGCCATGGTGAGAGGGGGGTGGGGAGATCCCAATGGGGAGACTAATGGACTCGGCGACAAGGGGTACCTGAGAGGAGATGAGGACGACGGGTCACCGCAAGGAGGCGGCAGCGACATGGAGGCCGGGGAGGATGATAAAGGCTGTGTGGTGGACTGTGTGGTCTGCGGTGACAAGTCCAGTGGGAAACACTACGGTGTGTTTACTTGTGAGGGCTGCAAGAGCTTCTTCAAACGCAGCGTCCGGCGAAACCTTAACTATACCTGCAGATCAAACCGAGACTGCCAGATTGACCAACATCATCGCAACCAGTGTCAATACTGCCGTTTAAAGAAGTGTTTCCGAGTGGGAATGCGCAAAGAAGTTCAGCGTGGACGCATCCCACCTTCGCATTCAAGCCTCAGCCCTTCCACGACTCCAGTGGGCGGTAATGCCGGCAGCGGCGTGAGCGAGTTCTACAACGGGCAGCCGGTGTCTGAGCTCATCTCCCAGCTCCTGCGGGCAGAGCCTTACCCTAACAGCCGCTACAGCCATCAGTACAACCAGCAGATGCAGGGGGGCGGTGGATCCATGGGCATCGACAGCATCTGCGAGCTAGCCGCCAGACTCCTGTTTAGCATCATCGAATGGGCCCGAAACATTCCTTACTTCCCCGAGCTGCCTGTATCTGAGCAGGTGGCCTTGCTGCGGCTCAGCTGGAGCGAACTGTTTATTCTCAACGCCGCCCAATCCGCCCTGCCCCTGCACATGGCCCCGCTGCTTGCCGCAGCAGGCTTTCACTCCTCTCCCATGTCTGCCGAGAGGGTGGTGTCCTTCATGGACCAGGTGCGCGTCTTCCAGGACCAAGTGGAGAAGCTGACCCGCCTTCAAGTGGATTCAGCAGAGTACAGCTGTCTGAAGGCCATAGCGCTCTTCTCACCAGATGCGTGTGGGCTGACAGACCCGGTTCATGTGGAAAGCCTGCAGGAAAAAGCTCAGGTGGCCCTGACCGAGTACGAGCGCATGCAGTACCCCGCGCAGCCCCAGCGCTTCGGACGGCTCCTACTGCGACTGCCCGCTCTGAGGGCCGTGCCCGCCAGCCTCATCTCTCAGCTCTTCTTCATGCGCCTGGTGGGCAAGACGCCCATCGAGACGCTCATCCGTGACATGCAGCTGTCTGGCAGCTCCATCAGTTGGCCATACGCACCCGGACAATAACCTGATTATCAGATGTGACCATAAAACCAGTCTGAACTGCGAGCTATCtctgtgtgatttttgtttagttttttccatCCACACATTCACTTCTGATATTCACCGAACCACTTAATGCAACTGGGTCATACTGTGGGTATGGTGGATCCGGTAGTGCACGACAGAAGGCTTGATGTATGCCCTGTGTGAACTCCTTTATTAGGCCCAGAAGCgttattaaaaaattacttgaGAAATATATTGGCTATCTGCTAGCCAAAGGTAAGACGTTAGGTACAGTTTCACAGCGAGTTATTAGGTGGAAATTGGTTAAAACCCTAAACAACAAGCTGTCAGTTGGGTGTAAACATGAAAGTCACTTTGGACTGTCCCTGGAGGCAGCAGGAAATCAAGTCCCCCTCATATTCTGCTCTGCCCTGTCCTTGTGTACCAGAAAGCCCGAAGGAGGAGGAAGTAGACATGATGACATccaaaaacccaaacaaaccaAACCGAAACAGTCAGAATTGGGACTTAGGCATTTGTTTTGCCAATGATAACTTCTTGGCTTGTATTTTTAgctctttttctttgttaatgttaatgcatttctATGAGGAGAGACTGAAATTTGGATcatgttttattgacaaataaaTTGCGGCCTGTATTTGTAGTGTGAGTTAAGGTACGGATTTGTCTCTTCACGagcgattcattttttatatgcaCACTGCGTTTGAGATAGATGACAAATGAAGTAGTCATTTTTTCcccagatgaaaaaaaaaaacagtgaactTTTCACGTAAGTTCATCGACATTCTACTGGATTCTATTCTGCTTtcctgctatttttttttccctcacttACCAGTTAATGCTAAACTGGTAATGAAGTCACATTATGTATGTTGACCAAAAGAAATACCTCTACAGTCTGTTGAGACTCAAATGGACTTGCAGTCATTAGCGGCTGGGTCAGTTTTTAAATTTATCAGCACACTTGAGCTGCTCACTTTACACTAAAGAGGAGTGATTGGATCTATCTGTCTGTTATGTTTGGCCATTTCCTGTAAGAAACTGGCATTGCCTGTTTTGTCTTTCGTGGAGCAGTGCTCTGGTGTGGCGTTTCACAGGTGACAGCATGTTGTATTTGGCTCTTGTTGTGAGATGTACGTTTTTCTAGCCTTATCATACATGTGAATGACTAATATTACCTCATATTTAGGCCTCGAAACGTATCAGGCGGTctaatatacataaatgcatcaAAGCGGCAACAtgtacagttttcattttaatatctttgtctttttaaatacttGTGTATGACAGCTTGATTAAACAAAAGTATCATACATTGCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16559 lncRNA upstream 5133 11353866 ~ 11355216 (+) True G11152
TU16563 lncRNA upstream 21880 11303678 ~ 11338469 (+) False fitm1l
TU16575 lncRNA upstream 39002 11304917 ~ 11321347 (+) True G11162
TU16539 lncRNA upstream 148774 11209001 ~ 11211575 (+) True G11137
TU16540 lncRNA upstream 154311 11205743 ~ 11206038 (+) True G11138
TU16594 lncRNA downstream 40981 11408632 ~ 11409086 (+) True G11177
TU16595 lncRNA downstream 54508 11422159 ~ 11423589 (+) False rps28
TU16596 lncRNA downstream 54508 11422159 ~ 11444571 (+) True rps28
TU16597 lncRNA downstream 78861 11446512 ~ 11448561 (+) True G11179
TU16604 lncRNA downstream 81112 11448763 ~ 11449433 (+) True G11186
XM_043219439.1 mRNA upstream 19246 11339735 ~ 11341103 (+) True mrpl34
XM_043219425.1 mRNA upstream 24365 11331383 ~ 11335984 (+) True fitm1l
XM_043261450.1 mRNA upstream 60314 11265292 ~ 11300035 (+) True map4l
XM_043256208.1 mRNA downstream 54439 11422090 ~ 11423303 (+) False rps28
XM_043256200.1 mRNA downstream 54439 11422090 ~ 11423303 (+) False rps28
XM_043217489.1 mRNA downstream 65438 11433089 ~ 11438717 (+) True angptl4
XM_043262715.1 mRNA downstream 114453 11482104 ~ 11507704 (+) True mast3a
XM_043264008.1 mRNA downstream 141061 11508712 ~ 11535896 (+) True pik3r2
TU16565 other upstream 19238 11339863 ~ 11341111 (+) False mrpl34
TU16555 other upstream 103585 11240126 ~ 11256764 (+) False kcnh2a
TU16308 other upstream 642155 10711130 ~ 10718194 (+) True G10979
XR_006247735.1 other upstream 1443488 9911628 ~ 9916861 (+) True znf414
TU16613 other downstream 128709 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 128709 11496360 ~ 11498937 (+) False mast3a
TU16617 other downstream 134751 11502402 ~ 11505730 (+) False mast3a
XR_006252734.1 other downstream 540422 11908073 ~ 11937590 (+) False pld1a
XR_006247874.1 other downstream 912260 12279911 ~ 12280014 (+) True LOC122328992

Expression Profile