RNA id: XM_043258315.1


Basic Information

Item Value
RNA id XM_043258315.1
length 3211
RNA type mRNA
GC content 0.41
exon number 20
gene id si:rp71-1g18.13
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17687841 ~ 17694911 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACTGAACACAGATTAACCGGGCGGAGCTTCACAAAGTTTTTGACAGTCCGTTTCTCTGTAGCTGTACGCGTTGGAAGCTAAGAAATGGAGAAGTGCAAATGTCATGCCATAGGGAAACCCGAAGCAGGAAGCTCAGGTCTCCCCTAAACGAGGAAATAAATGTTTCCAGTACCTGTTTACTTATGACATGAAAAGGCAAGAGGAAAAAGCAAATGCAATGTCTAGGCATTCAGAAGTTGTTAAGCACTCATCTGCTGCCGGACAGTACATGTTTAAGGGTGTAGGAACAGAAAGCTTTCAAACTAAGgaTGAGAATGGTGAACTCACAGGCAATAGTGACAGTCTGTTGGAGAACAGCAAGGTTAGTGATGGCTTCACTGCCACCGCTGACAGTCTATATAGCCTACACAGCAATAAGGAAGAGCTATCGTTACAACACAGAGAACTCTCAGCTGGCAATCACaaccaaacacaaaacagcaaCACCATGGAAGAACCAGCATTGaaaaatgaagatgttttaGGCAGTGACAAGTTTGTAAGTCACAATGAGGGAAATTCCCTTTTTAATTTTCTCAAAACATTTCCTAGAGGAGCTGAGGATACTTCTGAAGAGGACAGCCCACCGTTACACATTAAACTGCTGGCCTGTAATGACAAATTATTATACCTCTCCAACAACAACTTAAAGGATAGCTCAGAAAAGCtgagtagcacttttcacagttCCCCAAAACCAGCTTTACGTTTTCCTGCTGAAACAGACCCGCTAAGTGAGCACAGTGAATTTACGGACTGGGATGATAACTTCTTGGACTCTGGCATTAAAAAGAAATCTGTACCCAGAAAATGCAGTGATGAGAAACTCTCTAAAAGTAATAACAAAGTTGTGTCATTTAGAGTGAGGAGAAGTCTACCTAGAATGTCCACATTTTCATCCACTACACAGGATTCAGATCAACAAGATATGATTGAGGAGCCAGTGGAAATGCAGCAACTGGGGACAAATGAGGACTGTACTTTTGAAATTCTGCCACTGGAAATGGCTGCCTACCCAACAAATTCAAATTCTTTAGAGACAGATGAgGATGATGACTTGATGGCGTGGTGGAAAACTGTTGAGGGTTGGAGTGAATGGAATGAAACCGCTCATTTTCAGGAGGATGACGAGGAGCTGGCTGTCGAGGCTGCTGCAGACCGCGTGTTCATGGCCGCTCGTCTCTTTGTCAGTCTGTTCAACCAGCGCGGAGCATCTCTGCAGTGTCGCCTTTTAGAGTTGCTCGCTCTGGCAGACACTGCTGACAGCTTTCATAAGAAGACCGTGAGTGCAGCTGTTGGAGGGGGCGTAGCTAGTGTGGCAGGAGGCATAGCCACCATTACCGGCCTCATCCTCGCACCCTTCACCTTTGGCACGTCCACTATCGTCACTGCGGTGGGCATCAGTGTGGCAACAGCTGGAAGCATCACCTCAGCCACAGCTAACATTACCGATGCGGTTCAATCCAAAATGGATCGCAAGAAGGTGGAGAAGATGATCCAAGGCTACCAGAATGAGATCAGTGACATCAAAGATTGTCTAGAGTTTATGCAGGAAGGAATGAACACCCTGCAGGAATGGAATTTTAAAGAGTACTCTGAGAGCGTGGTCAACACGAGTCTTAGCCGTAACTTAAAGCATGTTATGAAAGAAGGTGGACGAGCAGGTAAAGCCCTTATGATAAACACAGATAGGCTTATCAGCACTGTGAAAGTTCTAGGTGTTGCTGGGGGTGCTGCCAAAGCCGCCAAGGCCGTCAGTATCACCACGGGGGTCATGTCCACTCTTTTCCTTGCCCTGGATGTCTTCTTTCTGGCCAAAGACTCCAATGAACTACGCAAAGGTGCCAAGACCAAATTTGCCTCCAAGCTCAGAGAAGTCTGCAAAGAGCTTCAACATGGCCTACTGGAACTAAACAAAGTGAAGACTCAGCTTCAAAAAACTATGGATGGAATTGAAGTAGAGGAatatgaggaagaggaggaggatgaagaccaTTGTGAGTCAGATCCTGTTAAACTGGCTCTGCTTGAGCAAGAAATCGATCAGCTGGAGGAGGAACTTGACCAGAAAACAATGCAGCAGCAAATGAACCGAAGCAAGGGAGGGGATGCTGAGAAGGAGATtcaaaaaaggaataaaataaggAGTCAAAAAGACGAGTGAATGATATAGGGTCTTATCAGTGCGCTGACATATGGAAATAACaaaagcaatacatttaaaGATTTGAAAGGAAAAATGGTAGGTGGGAATAAATAAGAATAGGTATAAAGCAGTTGACTTGAAAGCACCTGGAAGGATTTAGAATATAGAAAACAAGAAGACTGTACACAGATGTTAAGGGGCTGAAACAGATTATAAGAGGAATCGATCATTTCTGGattaaacagacagaaagaaaagaagcttATAAATACTTGTGTGTTATTCAGGAAAATCTAAATGACAGATGATACAGTAAGAAGTAAGGGAAAAacaatttgattttaatttctttataaatacCAGTGGATTAAAAGCCGTTCAAAATTCATGCTGAGGTTAAGGCAATAGGTTTCATCTTTTAATTCTATATAAATCAAACTCTGCATCGGAAACATTTTGCCACTCAACATGCATCTTTTATTTCCTATATGCTACACATTCCGCTCATgtagattaattaattaaatatgatatcCACCACCATGTATGCagacaaaaaaatccaaatgatTTTTTAGGGTTGTGGGTTTGTGGGTTTATAACAAACCACTAAACTTTGATATTTAATGCGTATCAAAGTTCTCTCCggtaaacaatgtaaataaattaattcaatggAATGTTAATGAAAAAGCAGACCACTGTGAATAAGTCAAGGGCTTTAGCATAAGGATTGAGTTTGgctttacattaataaaattgttcttgtggagaaaaaaaccccaaggAATCCACCTTAAACCAGTACTGACATAGTGCAATAATTATCAGTTGTGGGTTAAAAAGGCATTCAgtagatttagatttattttcttgAGTGCTGGAACTTTAAATGAGCAATTGTTTCTGACCTAATGGGTAGTTTTGGGGTATGTGCTGATGacacatgtttttattataaccaatatTTTTCCTCTGTGACCACgcaaaaacagcaaatatatATGAGCTTTATGTATCCAA

Function

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19350 lncRNA upstream 9459 17676072 ~ 17678382 (+) True G13112
XR_006252552.1 lncRNA upstream 75741 17610150 ~ 17612100 (+) True LOC122357958
TU19267 lncRNA upstream 158451 17527177 ~ 17529390 (+) True G13049
TU19266 lncRNA upstream 158451 17529001 ~ 17529390 (+) False G13049
TU19305 lncRNA upstream 207347 17480223 ~ 17480494 (+) True G13076
TU19359 lncRNA downstream 4678 17699589 ~ 17699825 (+) True G13121
TU19339 lncRNA downstream 11085 17705996 ~ 17768737 (+) True G13101
TU19420 lncRNA downstream 175367 17870278 ~ 17871416 (+) False nedd8l
TU19432 lncRNA downstream 184648 17879559 ~ 17881219 (+) True G13175
XR_006247112.1 lncRNA downstream 189859 17884770 ~ 17886098 (+) True LOC122324202
XM_043258476.1 mRNA upstream 449 17682504 ~ 17687392 (+) False apol1
XM_043258470.1 mRNA upstream 449 17682514 ~ 17687392 (+) False apol1
XM_043258461.1 mRNA upstream 449 17682759 ~ 17687392 (+) True apol1
XM_043257641.1 mRNA upstream 35117 17631364 ~ 17652724 (+) True LOC122357951
XM_043253189.1 mRNA upstream 150028 17536513 ~ 17537813 (+) True cbln13
XM_043262183.1 mRNA downstream 5396 17700307 ~ 17709682 (+) True dcaf8
XM_043262190.1 mRNA downstream 5396 17700307 ~ 17709682 (+) False dcaf8
XM_043262236.1 mRNA downstream 14923 17709834 ~ 17714790 (+) True LOC122361465
XM_043262244.1 mRNA downstream 14923 17709834 ~ 17714790 (+) False LOC122361465
XM_043262253.1 mRNA downstream 14923 17709834 ~ 17714790 (+) False LOC122361465
TU19349 other upstream 79749 17607252 ~ 17608092 (+) True G13111
TU19352 other upstream 119925 17566841 ~ 17567916 (+) True G13114
XR_006252905.1 other upstream 319980 17362245 ~ 17367861 (+) False sppl2
TU18915 other upstream 650544 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 1419044 16267043 ~ 16268797 (+) True G12531
XR_006247303.1 other downstream 84428 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 89268 17784179 ~ 17816764 (+) True G13137
XR_006247815.1 other downstream 2721292 20416203 ~ 20429345 (+) False crlf1a
XR_006247459.1 other downstream 2772357 20467268 ~ 20472616 (+) False gbp2
TU20479 other downstream 2786753 20481664 ~ 20485218 (+) True G13882

Expression Profile