RNA id: XM_043258476.1


Basic Information

Item Value
RNA id XM_043258476.1
length 1782
RNA type mRNA
GC content 0.44
exon number 10
gene id apol1
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17682504 ~ 17687392 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGTGGATTTACAGACACAACAAACAAGGCAAGAAAGGGTGGAGTTAATAACTTACGCTAACGTTACAAGTCAGCGGTTAAACAAGTAGCCTAGTGCTGCACGTTAATAGAAAATACAATGGAAACCATTTACAGTacacaattttgatttcatagaCAGACCACAGATTTATTTCCCTTTTGTTCTGCTCCTTTAAGGCACTTCTTTCCTCAGGGAAGTGGGCAGTGTGCGgacattttaataatggaCATCGAACTTTCTAAAACCGATGAAGACTGTGGCAATCACTCCACAACTGAGGGtatggaaaaaacacaaaagtcttTGGAGCCCTGTGAGAAACCTGAGGATAAATCGTCCAAATCTATGCAGGACACTAGCAATGAGATTGTGGAAAAGACGCCTGCCAAAGTGGATGAGACACCTGGAGAAGAGGAAAATCCAAAACAAACAGGACTAAAGAAGAAACCTAAAAATCCATTTATGCCCCAGGTAGCagcaaagAACAAAACAATGCAGAAGAAGAATGGAAACCAAAATGGAGACAGTGGCAGTGACCTTGCAGAGACCAAAGGCCCCAAGAAGTCCCTCATGGAATGGCTGGATGAGTTTCGTTTAAGTGAAACTCAGAGAGAAGATGAGGAGGACCTTGATGGCCTCATGGATTGGTGGGACACTGTGGAACAATGGGAAGAGATGCCTAAAAGTGACAACAtgacagagaaagaggaagcCAAGGCTTTTGCTATAACAGCTGAAAAGGTGCAAAAAGGCATACGTGTGTTTAATAAGCTTTTCTCAGAACGGGCAGAAGGACTATGGCAGCATGTGATTGACCTGCATGCCATTGCTGATGGCCTGGACCGCTTCAACAAGAAAACCAAGATTGCCCAGATCACTGGTGGCTCCACCAGTGCTGTAGGAGGTGTTGCTACCATAACTGGCCTCATCTTAGCACCCTTCACAATGGGAACCTCTCTGATCGTCACTGCGGTTGGTTTGGGTGTTGCCATGGCAGGTGGTCTTACCTCTGCATCTGCTGGGATATCTAGTACCGTCAACAATTCTTTGGATCGCAAGAAGGTGGAGCGCATTGTGGAAGACTACCAGGTGAAGATGACTGACCTTAACAAATGCATGAAGTTCATCAAACAAGGCATTACAAACCTACGCAAGTTCAACCTGAACAAGATGAAGAAGCATGCGTATAATAGAGACTTCCCTTGTTTCGACAATATTTACGAGGACGGTGCCATGGCGGGGAAAGCTGTTCTCACCAATGCCAATGAGATTATGCGTGTGATGCAGATAGCCAACGTGGCTGGAACCACTGCGGCACGTGCTGTGCAGATTGCTAGTATATCCACAGGTGTTCTGACAGGGCTTTTTGTCGGGATGGACATCTATTTTGTGGCCAAGGACTCCCATGAGCTGAAAAATGGTGCAAAGTCGGAATTTGCTGCTAAGATTAGAGAAGTGGCAGATCAGCTGCATGAGGGCTTGATGGAACTTAACATAATCCGAGATGAGTTGCGGTTTACGACCACTGTGAAAGAAGACAAACCATCATGACAAACTCTGTGAACAGTCCTCtgggtttatttttactttcacactagattatataacaaaaaaaaaaagattgtagaACTATACCGGCTTTCCTTATCAGCCAGCAAAGGATATTTGGGATCTTATTTAGTACTTTATATCTGCTGCTTGTTATGGTGTATTTGCTGCTTTTATAAGGCTAaaggaatattaaaaaatatacgcTCTC

Function

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19350 lncRNA upstream 4122 17676072 ~ 17678382 (+) True G13112
XR_006252552.1 lncRNA upstream 70404 17610150 ~ 17612100 (+) True LOC122357958
TU19267 lncRNA upstream 153114 17527177 ~ 17529390 (+) True G13049
TU19266 lncRNA upstream 153114 17529001 ~ 17529390 (+) False G13049
TU19305 lncRNA upstream 202010 17480223 ~ 17480494 (+) True G13076
TU19359 lncRNA downstream 12197 17699589 ~ 17699825 (+) True G13121
TU19339 lncRNA downstream 18604 17705996 ~ 17768737 (+) True G13101
TU19420 lncRNA downstream 182886 17870278 ~ 17871416 (+) False nedd8l
TU19432 lncRNA downstream 192167 17879559 ~ 17881219 (+) True G13175
XR_006247112.1 lncRNA downstream 197378 17884770 ~ 17886098 (+) True LOC122324202
XM_043257641.1 mRNA upstream 29780 17631364 ~ 17652724 (+) True LOC122357951
XM_043253189.1 mRNA upstream 144691 17536513 ~ 17537813 (+) True cbln13
XM_043253119.1 mRNA upstream 157735 17518812 ~ 17524769 (+) True parp2
XM_043255265.1 mRNA upstream 170689 17508786 ~ 17511815 (+) True sdr39u1
XM_043255276.1 mRNA upstream 170689 17508786 ~ 17511815 (+) False sdr39u1
XM_043258342.1 mRNA downstream 449 17687841 ~ 17694911 (+) False si:rp71-1g18.13
XM_043258315.1 mRNA downstream 449 17687841 ~ 17694911 (+) False si:rp71-1g18.13
XM_043258332.1 mRNA downstream 449 17687841 ~ 17694911 (+) False si:rp71-1g18.13
XM_043258357.1 mRNA downstream 449 17687841 ~ 17694911 (+) False si:rp71-1g18.13
XM_043258368.1 mRNA downstream 449 17687841 ~ 17694911 (+) False si:rp71-1g18.13
TU19349 other upstream 74412 17607252 ~ 17608092 (+) True G13111
TU19352 other upstream 114588 17566841 ~ 17567916 (+) True G13114
XR_006252905.1 other upstream 314643 17362245 ~ 17367861 (+) False sppl2
TU18915 other upstream 645207 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 1413707 16267043 ~ 16268797 (+) True G12531
XR_006247303.1 other downstream 91947 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 96787 17784179 ~ 17816764 (+) True G13137
XR_006247815.1 other downstream 2728811 20416203 ~ 20429345 (+) False crlf1a
XR_006247459.1 other downstream 2779876 20467268 ~ 20472616 (+) False gbp2
TU20479 other downstream 2794272 20481664 ~ 20485218 (+) True G13882

Expression Profile