RNA id: XM_043258935.1


Basic Information

Item Value
RNA id XM_043258935.1
length 2640
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC122358930
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25580800 ~ 25591012 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTGTATAAGAGTCACGACGTCTCGacgttttaattgttttgttactCTGTAAAATAAATCCCACTATTTGACAACAGACAGTGCAAAAACTGTCTGCCGTCAGATAATATCAACCGTTATTAATTTCCAGCGTCGATGAAACGAAAGAATCATTCCTCCTCATTTCTAATCTTCATTCTATCTCATAATCCTCGCGCGCCCCCCAGATGTGCTTGTGCACTACGCCCACGCGCACGGACGCGCGCACGCAGCAGCGTCTCATTGAACCAGAGCAGAGCCCGAGAGGAGCGAAACATGGCGACCTCGAATAATCCGCGAAAATTCAGCGAGAAGATCGCGCTACACAACCAGAAGCAAGCGGAAGAGACAGCCGCGTTCGAGGAGGTGATGAAAGACCTGAGCATTACCCGCGCGGCGCGTTTACAATTACAGAAGACTCAGTATTTACAGCTCGGTCAGAACCGAGGACAGTACTATGGCGGCTCTTTGCCAAATGTCAATCAGATTGGAAACACCACCATTGACCTTCCCTTTCAGACTCCTTTTCAGAACTCGGGACTGGACACGAGCAGAACGACTCGTCACCATGGGCTGGTGGAGAGGGTCTACCGGGACAGGAATCGCATCACGTCGCCTCACCGCAGGCCTCTCTCTGTGGACAAACACGGCCGTCAGATTGATAGCTGTCCATATGCCTCTGTGTATCTATCACCCCCACCTGACACCAGCTGGAGGAGgaccAACTCAGACTCCGCCCTGCATCAGAGCACTTTGAACCCAAACCCGCAAGATGCATTTGCAGGAGGGTCTCAAGATTTGCAGCCAAAACAagTTCTTCTTCTCACTATGCCAGGAACAGGCGATCTTGAAAgtgacatgaacaaagagagtCAAAAGCAGATATGGGATCACAAAAAgACTTCTTCACCAAGGCCCAAGTCAAACAAAATACCTGGAATCAACATATTTCCATCTCCAGATCAGGAAATGACTGCATCTCTAATCCCAGCGGCGCACAACACGGGCGGCTCTCTGCCAGACCTGACCAACATCCAGATTCCCCCTCCTCTCCCCACACCCCTGGATCCTGATGACTCCTCATCCTCTCTCAGTGCCTCCAACAGCACTGGCAACCTGGCCAACACTCACATGGGCCTCACGTCTGTCAGCCAAGGTGTGACATCAGCCCAGCCCACAGCGACGATGAGCGTTCAGCGCCGCCATGAGAATGTAGTTCCCCTGATCCTCAACACAGACTCCCAGCAGCACCCGAGTCTTCAGCAGCTGTCGCCCACCCTCTCACCTCCGCTCTCTCTCGCACAGGCGGTGACGATAGACGCCATGACGCTGGAGCAGCAGTTGGCTCAGTATGCGTTCTTCAGTCAGCCGTCCACACAGACACAGGGGGTCGGCGGGCTTCCTCAGCTCCAGCAGAACACCCAGCTGCCACCTGTCTCTGGCAGCCAGACGCAAACCTCTGTGGGCATTGATATTAACACGCACTCATCCATTCTCGGAAGTGTCTTTGGTGATGCCTTTTACGACCAGCAGCTGTCCCCTCGGCAGACCAGCGCTTTGTCTCAGCAGCTGGAGCAGTTTAACATGATAGAGAATCCCATCAGCTCAAACAGTCTGTACACCGAGGGATCCACTCTGAACTACTCTCAAGCTGCGATGCTAAACCTCACCGGGAGCCACGGCAGCCTGCAGGACGCAGCGCAGCAGCTAGGGCTACAGCAGCCACGGAATATCCCTAACATCATTCTCACAGTTGCAGGAGAGTCTCCACTGAGCCTATACAAAGAGTTGTCCAACTCTCTGACAGGTGACGTGAGCTTTGACGCAGATTCCCAGTTCCCTCTGGATGAGCTGAAAATCGATCCGCTGACGCTGGACGGCCTGCACATGCTCAACGATCCGGACATGGTTCTGGCCGACCCCGCGACAGAGGATGCTTTCCGGATGGACAGGCTGTAATCTTTAAGTATACCATGTTCATTTGTCCTTCTTTGAGATGGGTGTGTTTAAATGGGAGAGGAGCAGCATGTCTGGAGGACACTTAGACCCTGTTTCTCAAAGCCCATCCTCTGGGAAGAGATTGCTGCGAATGCTGCCACGGCATGCTAGGGGGAAAAAATGGGAAAGCAGCGCTGCCACACGTAACGAATCAACCTTTTGAGCAAGCAGCCCATCGTTTCTTAGGATAATACACTCGCACCTCAGCAAATGTGGTTCCTTTAGCTCTATAGAGAGAATGTGACGCTACATAAGATCCCTAAACGTTCAAACATGTGTTCTTCCATTTCATTTCCTTCTCCTGATGCCTGCCATACATGCCCGttactttcctttttctttaaatactaatatttagtTATGCacttttatacatgcatatgccACCAAAAACGTccgtttttaatttattttcctatACAAATATTTCTTGCTTGTAAGAACATTAATGGTTAAAAAGGAGTGTTAATCCTCCCCATTTTAAGGGCAGCTTTCATGCAACACGTCAACACTAATGTACTTCAGTGCAGTCTGAACATAtgattgtaatgttttatagaTGTCTAGTTTTGTTCTCAGATAGTAGTACAGTGCTCATGTGGCTCAAGATCATCAAATTCAT

Function

GO:

id name namespace
GO:0051289 protein homotetramerization biological_process
GO:0032793 positive regulation of CREB transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008140 cAMP response element binding protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22618 lncRNA upstream 250515 25190020 ~ 25330287 (+) True G15250
TU22586 lncRNA upstream 373872 25199691 ~ 25206930 (+) True G15226
TU22584 lncRNA upstream 411062 25105703 ~ 25169740 (+) False G15225
XM_043258956.1 mRNA upstream 6667 25571141 ~ 25574135 (+) True LOC122358952
XM_043263859.1 mRNA upstream 64622 25492260 ~ 25516180 (+) True LOC122362387
XM_043216497.1 mRNA upstream 160874 25415519 ~ 25419928 (+) True LOC122322894
XM_043222945.1 mRNA upstream 173899 25394156 ~ 25406903 (+) True LOC122327519
XM_043264908.1 mRNA upstream 276079 25300200 ~ 25304723 (+) True LOC122363040
TU22814 other upstream 78644 25492260 ~ 25502158 (+) False LOC122362387
TU22813 other upstream 78644 25496063 ~ 25502158 (+) False LOC122362387
TU22800 other upstream 182920 25394331 ~ 25397882 (+) False LOC122327519
XR_006253181.1 other upstream 344193 25222144 ~ 25236609 (+) False LOC122362952
TU22577 other upstream 405514 25170736 ~ 25175288 (+) True G15224
TU22853 other downstream 8449 25599461 ~ 25599926 (+) True G15410

Expression Profile