RNA id: XM_043258956.1


Basic Information

Item Value
RNA id XM_043258956.1
length 2196
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122358952
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25571141 ~ 25574135 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATTCATTCCACTGACCAACACAAAGACAGCACAAACAAAACGAACTTGCCATGCCGAACTCAGTAGCACAGTGCTTTCTCCTTTCTGTTGGGGTTGTTATTTTTAGCTCTTGTCTGCGAGAGTCTACGGCTCAACGGGAGCGTGAGGAAACGTTCAAGGGCCTGCAGCTTGAGGCTCTGAAGAGCATTATCCTGGAGTACCTCGGGATGGATGCGCCTCCCGGGCCTGGCGGAAGAGCTTCTCATCAGGACCTGGTCAGGATGTACCGTCAGTATCGGAGAATGGGATACTTGCTTAAGGGCAATTCCAGTGAGGAACAGGAGCCTCAGCCTGCAAGAAGAGCCTCTACTGTGCTTTTCCCCACAGCAGTTCAGCTCCTGAATTCTTCCGTGGATTCCCGGCAGCAGTGGTTCCGAGCTGCTTTCTACAAAAGCTCACGCATTAAAACTGGAGTAAACCTTAAACACGCGAAGCTGCAAATTAAGAGACCACACGCGGACAAAATCGCACCGGGCCAGCCGTGGCTCTCAAAAGACGTCGTGGTTAGAATGCGTAAGCCTCCCGGTTTCCATACAGACGCTTTAATTCACTCGGGGGACTTGAGCTCTCGGGATGTAACGCTGGATTTGACAGTTGCGGTCAGGAAGTGGCTTAAGGACGCCAGTGCTGAGCTTTTAGTTGTTGAAATTTGCCTCCTTAAAAAACAAGAAGTGAGCACACAATCCACGCCTCAGCTTGTTTTACAACTCGATCAAGCGGTGAGGAGAAGAAACAAGAGAGCCCCGTCTACCAGAGAGGAAAGCGTCGAGGATGAAGGTCACTGCAGGCGAAAGTCATTAAATGTTTCCTTCAAAGACATCGGCTGGTCGGACTGGGTTATTGCTCCCTCGGGTTACACTATGCACTACTGCGATGGCTCCTGCCCGCATAATTATAAACCTGCCAGTATGCATACGCAGGTGAAGTCTCGTCTGCATCTCTTGTCCAAGGGAATGACGCCCGGGCCTTGCTGCGTACCAGCTGCGTATGAGCCAATGGTTCTCATGCACTACGACAGCCGTGGAAAGCTGAAGCTCACGCCTTTCAACGATTTGATAGTTAGTAAATGCCACTGTGCGTGAAAGGCACGGGCTCTGGCTCTCCGCTGCGCGTTATGCTCTCCAAAGAGAAGATGAGAAGGAGGCAGAATATCTGGCTGATAAAACGCGAATGTTCTCACGCTCGTCTGGTTGCATTCCTTCGGTTTATAAAATAGTTTGGCTACTTAAAGAAACCGGATGCCTGCTTTTTTGCGTAACACTGAAACGTTAAATGTGTACTGTATTTCCATGTGATTGACTTACTGGACTATCaagttatttattgtaatttatttgagatgtttttgtACTCGTTTGTCGCCGTGTCGCGAATGAATCAAGAaaccttttgtatttttgaaagaatgttaataaagtatattgcttttatattcGATTAATGGCTGAATCGCATTTCAACCCAACGTCTTTGAGTTTAAGACGAAAATCCTCACACACGGTATTTTATGAGGTTAAGCTGTTGTAAGAACTCCGGATGTtgttaaaaagctttaaaatccaTGTTTAAATGCTATGGAAATATGGAAAACAGGCCTTTAGAATGAATCATCTGCGTATGACTCATATAACAATGAGCTATAAAATGAACTCACACTTACGTTTTACATATACGTAAGTGAAAACTTATAAATTACGGTCTTTTACCATAATATTTTCCAATAACCGCTTAGTCCTAGATAATATTTCAAGGCGAGGTCATGCcataaatgacataaaagctATTTATCCGTGTTAATCAATATCCATATTTATCCTGTCTATAAAGATAGGCCAGATCTAACAACTGTAGCCTTGAAAACACACATAGGTGTCACTGGCCTTGACCAGAGAGTGAATGTCCTCTGAAGCAACCACAGCAGAGACAGGAGTTCATTTGTGGCTCggtatttatataatactgtCACCGGCATCACTGTAGTCCATACATACTTGTTGTCTAGTGACCCTGCAGGATTTTGCTGACtgttaatatttttcacatGCTTTATACAATGTACTGTTTTGacataatgtaataattcaaTTGGTAACGATAAGAGTAATAACTGCTATCATCACTCAAAGAAGCATAAAGCAATAAACCATTTTTTGTA

Function

GO: NA

KEGG:

id description
K05504 GDF15; growth differentiation factor 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22618 lncRNA upstream 240854 25190020 ~ 25330287 (+) True G15250
TU22586 lncRNA upstream 364211 25199691 ~ 25206930 (+) True G15226
TU22584 lncRNA upstream 401401 25105703 ~ 25169740 (+) False G15225
XM_043263859.1 mRNA upstream 54961 25492260 ~ 25516180 (+) True LOC122362387
XM_043216497.1 mRNA upstream 151213 25415519 ~ 25419928 (+) True LOC122322894
XM_043222945.1 mRNA upstream 164238 25394156 ~ 25406903 (+) True LOC122327519
XM_043264908.1 mRNA upstream 266418 25300200 ~ 25304723 (+) True LOC122363040
XM_043264772.1 mRNA upstream 334532 25222144 ~ 25236609 (+) True LOC122362952
XM_043258919.1 mRNA downstream 6665 25580800 ~ 25591012 (+) True LOC122358930
XM_043258928.1 mRNA downstream 6665 25580800 ~ 25591012 (+) False LOC122358930
XM_043258935.1 mRNA downstream 6667 25580802 ~ 25591012 (+) False LOC122358930
XM_043258943.1 mRNA downstream 6668 25580803 ~ 25591012 (+) False LOC122358930
TU22814 other upstream 68983 25492260 ~ 25502158 (+) False LOC122362387
TU22813 other upstream 68983 25496063 ~ 25502158 (+) False LOC122362387
TU22800 other upstream 173259 25394331 ~ 25397882 (+) False LOC122327519
XR_006253181.1 other upstream 334532 25222144 ~ 25236609 (+) False LOC122362952
TU22577 other upstream 395853 25170736 ~ 25175288 (+) True G15224
TU22853 other downstream 25326 25599461 ~ 25599926 (+) True G15410

Expression Profile