RNA id: XM_043259004.1


Basic Information

Item Value
RNA id XM_043259004.1
length 4798
RNA type mRNA
GC content 0.41
exon number 12
gene id nlrp1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21818882 ~ 21827232 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTCGTCGCGGGGAGTGGATCAGTTGTTCATCGTGTTTTCCCGACGTATCGTGACAGGACGTGGAGTGCTTAAGGAACATAGGATTGTTTCACAAATTCTCATCGGAAGAACGTAAAAAGAACGATCTGCCTGAATTGGTGGAGAAAggcatgaagaaagaaaaacaaggtcCTTGTTACGTGTTATCTGAAGACAGGTGGACTGAGAAACCGAGGAAATCTCAAGATTCAAAGATAAAAGGAGAAGCTTACATCAGATGCATGGCTGCTTCTTGTGATGTCATTGACTTTGACAAATTTGAGTTACAAAGTTTAACAAATGTTCAACTCAAACATGACATAGGAAGTGAGGTGATGCCAATAAGCAGAAGAGAGCAGAGCAACATGGTCCGTCAGTACAAGTCTTCAGTTATTGACAGGTTTAAGTTTGTAACAGAGTATAATCTTCCATCTGATGAACTTGTGGATCTGGCCGCCCGATATACTGAGCCAATGATCATTCAGAGGAGCAAAGATCAAACTGAGAAATACTATCAGGAGAATGTGAGGTCTGTGGATGCTTTATCTCATCTGTTATCAAATGACAAGAGTCACAGCGTCAGAATAGACCAGCTGTTCAGTCCTGACTGTGATGGAAACAGACCAAAAACTGTGATTCTCAGTGGAGATTCTGGAAGAGGGAAATCCTTCATGTTACAGAAGATCATGTTGGACTGGGCTTCTGGAGAGCTCTACTCTGAAAACTTTGATGcagtttttcttctgaaatgtgAAGAGCTGAAATGTGTTTCTGAAGAGATGAGCTTATTTGAGCTCTTGAGCTGGGGTTGCAGTTTAACATCAGATCAGATCTTACAGATATTACAGTTTACACCAGAGAAAGTCCTCATCCTCATTGATGGAATGGATGAGTATATATCTTGTCCACCCATTCACTTCTTGTTACTACACACTAATCCATTCAAGAGAGCGCCACCTATGGTCATTCTTAGGAACTTGTTTAGAAGATTCTTGCTGCCTGAGTCATTCATGCTTGTCACCACAAGATCTGTAGCTGCTAATGCGCTGATGAATCTCCTCAAGAGTCCTCAGCGTTTCACTGAGATTATGGGCTTCTCTGAGAGAGGAGTGCAGAAGTACTTCCAGAAGTTCTTTCAGGATGAGCAGCTCTTCAGGAAAACATACGATAGCGTGAAGACTAATGAAAGCCTCCTGACTGCCTGCTCTGTGCCTTTTCTGTGTTGGATGGTCTGTGCTTGTCTGAAGAAACACGTTACAGATGATGATCATGTAATGAAAGAACTAAAGACAACCACCTCCATATATGTACACTTTGTGTCCACTCTACTGGATCATCATCATGACCAGAGTCTGTCTGTCCTCACCATGCTGAGGAGTCTGGGTCAACTGGCAGAGGAAGGGAAGAAGAACCGTCTGGTGTTTTTTGATTATAAGGATGTAGCCAAGACTGGTTTAGATCCAGCTACTGTTTTGTTCTTGTATAAAGATGATTTCAGAGGCAAAAAAACCAGACCAATTTTCAAGTTTATCCATTTCAGCTTTCAGGAGTTCTTTGCTGCgctttattgtgttttgctGGATGAGGAAGAGCCCTGGTGGAAACTCAGTGAGCGGTTTATCCTGATGGATTCAGAAGCTATAATTTACAGGTCGTCTCCTATTTCGAGACTTAGACTATCAAATACCATCCCTTCAGTCATGATGTTTCTCTGtggttttttaaataagaagaCGACAAGCTCAATCTTTGAAACGATCAAGTGGACTGTTCCTCAAATcaccaaactgaaaaaaaggcaACTAAAGAAAAAGCTGGCAAAACGGATTCCTGCAATGACACGGCAGTATGAATTAGAGTTATTTGCTCTCCACTGTCTGTATGAGCTCCAGGATGAAAGATTTGTCAGGGAAGCTTTGAACAAACACAGGTTCATGAACCTGTCTAACATTTCTCTGAGGAGCACAGACTGTCGTGTGCTGCTGTACTGTCTTCAGTGCTGTCCACACATCAGAGACCTGAACCTCATGAACTGTGATTTAACAGCTGAGAAACTCAAGATTCTTCAGCCAGCACTCTGTATGTGTAAGACTCTAagGTTGTCAGTAGATCATCTGTCAGAAGTTGGAAATTTGATCCGGATTGTTGGTGAAGGAAAAATCTTGCGAGAGCTACAAGTTCAGGAGGATGAATACAGTCCTGAGAGTCCCAGATGGTCACTTAACCTTTCAGTCTCTGGTGGAGATGTCTCCTTGTCTTTGAGCTCATCTGAGAAGAATCCATAATTTCCAGCAGTATTAAACATCAGTCTTACATGTCCACAATCAGAGATATCCAACACTGACTGGACACTCTTCTTACAGAGACTCAGCAGGGCAGGAAAAGTTGCAGAAGaCTCTTCAGCTCTTGATGAGCATATCAGTTTGCTGCTGTCCTCTTTTCACTCTGTGGGTTTGAAGACGTTTGACCTGAAGCTGGTCAGTCTGAATAAAAACTGGGCTTCTGGGATCACTTCCCTCATCCAGACCTGCACCAGTCTACACAAGCTCAGTGTCAATGTCACCGGATTGCTTTTGGAGGAGGGACTCATTTTACTGAAGAAATCACTGGAAGATCCACACTGCGCTGTGAACATTGAAGGGTGGAAATGCAGTAAACCCACTGACCAGTGCAAAGGACAGGACTGGAGTCAGAGCTGTAATGACAAAGTGGAGATTCACTTCAAACCAAAGGTTTTGGGAAAGCTGAGAGAATTGAACATCTCTGAACCATCTGCCATGAATCTTTATTGTCAGTCTTGTATTCACATTGTTGACTCTGATCAGTGGGTTCAAGTGGAGCCGTCAGTCTGTACAGATGAAGGAGGCTCAGAGTTCAGGATCAGCACTCCGGCGGGTCGATTCGAGTGCAGCAGGACCAGAATGCGATGGGTCTGTGCTGGTGACGTCACTCTCCAGTACCGTGCAGTGGATGGAGGTTTCCTCAGAGCAGAGCTGGAGAGGCTTCGGTGTGAGAGAATCGGTCCTGTGATTGATGTGACGGTGATCTCAGGGAAACTGGAGGAGGCCCATCTGCCTCATTATGCCTGTTTAGCAGAGTCGGATCCTTCCCTCAGAGATGATGTAAAGGTCCTCAGTGTTGAAGAAGAAGGAATATCTTTGGAATCGGTGGAGTTGACTCGTTTTCATGCCAAATTAATCCAGCCATATTTTTCTCCTAAAACGGTGCTTATGAAATTAGGGTTACCAGTGAAAGTGCACTGTGATCTACTGATCTTCATGACACAAAAGAACCCCATCATTCTCCATGTGTATTTTTTCCCATCTGattcactttttaaagaaaagattaaaacagaagaaaaatgttgtcatcAAATTAAATGTTCGAGACCTGAAACCCCACTGCAGATGATGAAACAACACAGTCTTGAGGTTCCTGGTGCTTCTGTCCAACCTGAAGAGATCAAACTAAGAGGAGACGTCGATCCAAACTTCTTTCAGGTGAAACATCCTGTGGTCGATGACATCAAAATGTCTCTCAGTCGAGTGGATGATCAGAAATCAGTTTGGACTGCAACAATTTGGAAAGAATTAATCAACATTCACCCAAACAGGACTGAGGCCTTGTTTGTAACGCgacaaaaccaaaatacacCACAATTAGCTGTCAGCTTTGATAAAGTTCAGTTTTTTGATAGAAACTGGTGTGCTCTTATTAAAAGTGTTGAGAATGTGAATAAAATTGCAGACAAACTGCTTCAGAAGCAAATCATTCATGAAGAATTATATTCTGCAATCACACGTCCTACTTCAACCAGTGAAGCCAGCATGAGGAAGATCTGTAGCGTAGTGCGTAAAGGTAGTGACACTGTGAAAGAAATGTTCATCTCCATTCTTCTGAAAGAAGTTCCCGACCTTTTAAATCATCTTCCTTTACCTGACTCTTAACAACTTTTGCTTGGAGACTCTATGTtgtgttttacatgttttgacAAATAACATGTAAACTACAATGCTCCCTAAAGTAATATACTGGAGTTTTTAGAGAAATCAATTTTAGcaaatcaatcaaacaatcacttttattcatgTAGCACTTTTACCAATAcagattgttttaaagcaatgaacagtataaaataggagaTAGTAaagtataatgacaagattaaacacttaatttttattaaatgcagttggtctgtgtaatcaaatgaatggtaatcgctagaaattaagtgtccccaaataagcaaacaagaggcgacagtggcaaggaaccaaaatcccatctgtggaggaaaaaaaaaaaacctgggaGAAACCTGGCTCAGTTGAGGCCAGTTCTCCTGAACCGGATAACCAGCACTTAattttcagttcaattttaaacacagctctGTCATATTGTGTAAAGGACTTCATGTGTGTGAATCATATTCCCTTTTGAAGAACATTCAAATCCTCTGCtcacctttaaaaatgaaaggagAACAAATGTTGCAGTATATTTTCCTGTTTGATAACACTGAAcgcaaaatatttctttaaaggtttatttCTATACAGTTGTGTTGTTGTAATACTTAACAGTGGCATATCCTTGGAAGAACTCCGCATTTGCCATTGTGATGAACTTATGGCTGAGCGCAGACATTTCACTCATGTTGGATGTGTCAGTTTCACATTTGCATAGGCCACATTATTTGAATTCATGACTGGTAGATGgggtaataaaataaagttattagcCAGTTACTGGCTATTCAAAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252672.1 lncRNA upstream 5979 21810929 ~ 21812903 (+) True LOC122359002
TU21153 lncRNA upstream 98307 21719918 ~ 21720575 (+) True G14316
TU21152 lncRNA upstream 100890 21716771 ~ 21717992 (+) True G14315
TU21083 lncRNA upstream 197785 21533245 ~ 21621097 (+) False ece2a
TU21366 lncRNA downstream 21975 21849207 ~ 21850069 (+) False LOC122327294
TU21368 lncRNA downstream 24672 21851904 ~ 21852835 (+) False LOC122327294
TU21373 lncRNA downstream 38506 21865738 ~ 21866839 (+) False fndc7a
TU21375 lncRNA downstream 67376 21894608 ~ 21895131 (+) True G14476
TU21376 lncRNA downstream 67939 21895171 ~ 21895478 (+) True G14477
XM_043259016.1 mRNA upstream 9550 21794688 ~ 21809332 (+) False wdr47a
XM_043259036.1 mRNA upstream 9550 21794925 ~ 21809332 (+) True wdr47a
XM_043259027.1 mRNA upstream 9550 21794925 ~ 21809332 (+) False wdr47a
XM_043219111.1 mRNA upstream 25292 21754405 ~ 21793590 (+) True camsap2b
XM_043224622.1 mRNA upstream 102592 21714683 ~ 21716290 (+) True ccl20a.3
XM_043222534.1 mRNA downstream 16343 21843575 ~ 21853007 (+) True LOC122327294
XM_043219847.1 mRNA downstream 29980 21857212 ~ 21867399 (+) True fndc7a
XM_043222546.1 mRNA downstream 69444 21896676 ~ 21911669 (+) True fndc7rs1
XM_043253209.1 mRNA downstream 102065 21929297 ~ 22026087 (+) True gpc5c
XM_043253218.1 mRNA downstream 102065 21929297 ~ 22026087 (+) False gpc5c
TU21151 other upstream 102595 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 336564 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 457174 21307407 ~ 21361708 (+) False G14211
TU21370 other downstream 33659 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 101515 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 864019 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1717874 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1909819 23737051 ~ 23737122 (+) True trnaw-cca_1

Expression Profile