RNA id: XM_043259027.1


Basic Information

Item Value
RNA id XM_043259027.1
length 4078
RNA type mRNA
GC content 0.51
exon number 15
gene id wdr47a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21794688 ~ 21809332 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gctgctgcttctgcgCCGACTGGATGACACGCTCTCCCCCCGCAGCTTCGGAATATGTCCGCGGTGCATATGGGTGGATGTCCGCTCTCGCTGGTGCCTGGTGGGGTGTAATGCGGCTAATTTAGGACGTGATCGGTGCACGCGGTCGTATGAAGGCATTGCAATGAACTCGTGCGGGTTCGGCAGTTGGAAATACTTGCCATCATGACGGCTGAGGAGATCATAAATGTAAAGGAAGTGGAGATCATCAAGGTGATGCTGGACTTCCTGAACTCCCGCAAGCTGCACATTAGCATGCTAGCCCTGGAGAAGGAGAGCGGCGTCATCAACGGCCTGTACTCAGACGACATGCTCTTCCTCAGGCAGCTCATTCTGGATGGACAGTGGGATGAAGTGTTACAGTTTATTCAGCCTCTTGAGTGTCTGGATAAATTTGACAGGAAAAGGTTCCGCTACATCGTTTTGAAACAGAAGTTTCTGGAAGCTTTGTGCGTGAACAACGCTATGTCTGCTGAGGATGAGCCACAACATTTGGAGCTGACCATGCAGGAGGCTGTGAAGTGTCTCCATGCTCTGGAAGAGTTTTGTCCATCAAAAGAGGACTACAGCAAGCTCTGCCTTCTCCTGACGCTGCCCCGCCTCACCAACCATGCCGAGTTCAAGGACTGGAACCCGAGTACAGCACGCGTGCAGTGTTTTGAAGAGGCCTGTGGGATGGTGGCGGAGTTTATTCCCGCTGACCGAAAGCTGAGCGAGGCGGGCTTCCGCGCCAGCTCCAATCGTCTGTTCCAGCTTCTCATTAAAGGCCTTCTGTACGAATGCTGCGTCGAGTTCTGCCAGAGCAAAGCCACCGGAGAAGAGATCACAGAGAGCGAGATTCTTCTAGGAATAGATATGCTGTGTGGGAACGGCTGCGACGATCTCGACCTGAGCTTGCTTTCTTGGCTGCAGAACCTGTCGCCCAGTGTCTTTTCTTGCGCCTTTGAGCAGAAGATGCTCAATATCCACGTGGATCGGCTTGTTAAACCCGCCAAGGCCGCTTATGCAGACCTCCTCACTCCGCTCATCAGCAAGCTCTCCCCGTATCCTGCTTCTCCTCTTCGCCGCCCACAGTCTGCGGACACCTACATGTCACGCTCTCTGAACCCGGCGCTGGATGGCCTGTCCTACGGTCTGTCTGGCCAAGAGAAGAGAGCAGCGGGAACGGACGGTGGGAAAACTTCACCCATGTCACACTCATTTGCTAATTTTCAGCACATGAACCGCAGTGTGATGATGGAGAATTCAGGATGTCACAGCATCTTTGAGGAGTCCCCGGAAAGCTCCAGAACCGAAACTCCATCTGATAAAATGTTGAGCTCACCCGGCCCTCAAAACTCTCGCCCGGTCTCTGCCCCGGGTCAGGATGCCCCAGCCCCTGGTTCTGCAGAGAAGAATGAGTTGCGGGACTCCACAGAGCAGTTTCAGGAATATTACCGGCAACGCTTACGTGTGCAGCAACATCTGGAACAGAAGCAGCAGCAACGGGAACTCTACCAGCAGATGCTACGAGAGGGCGGAGTCCAGCAGCACGAGGCCCCGCCCGCCGCCAAGCACAACCTCACAGAAGCCTTCCTTACCAGatctATTCAGAGACTGGAAGAACTAAATGTGGGAATGGATGATTTGGGAGAAGAGGTGCAGGCTCTCTCTCAGCAGTGCAATGGAGGAAGTGATAACAGCAGTGAAGTGAAAGACGCTTCATCCTCACCTCAGATACAGGAAGGCTGCGGAGGAGCCGGCGACGTGGTCACCAGCACTCCTCAGAGGTCAGCGGGTCAAGCGGCCTTCCCTCCGCCTAGCCAGTCTCCTGTCCTGCCCCAGAGTGCCCAAAGAGACAAAACTGGACACAATGACAGCAGTTTGACCCGCTCTAAAACGCCAGAGAAAGATAAGCCTAAATCGAAGTTTGTGATGGTCAACACCTTGGAGGATACGCAGGCGGTCCGGGCCGTGGCCTTCCACCCCACAGGGGCATTATACGCTGTCGGCTCCAACTCTAAAatgctgcgtgtgtgtgcctATCCTGACACGCTGGACACGAGtggcTCAGGCTCAAGTAAACCTCCTGTAATccgcttcaagaggaacaagcATCACAAAGGCTCTATATACTGTGTAGCCTGGAGTCCGTGTGGACAGCTACTGGCCACCGGCTCCAATGATAAATACGTCAAAGTGCTGCCCTTCAACCCTGAAGCCTGCAATGCTACAGGTCCTGATCTGGAGTTCAGTATGCATGATGGGACTATCAGAGATCTGGCGTTTATGGAGGGTCCTGAGAGCGGAGGGGCCATTTTAATCAGTGCAGGAGCCGGCGACTGTAACATCTACACAACTGACTGCCAGAGAGGACAGGGCCTGCACGCGCTGAGCGGACACACGGGTCATATCCTGTCTCTGTACACGTGGGGGGGCTGGATGATAGCGTCCGGGTCTCAGGATAAGACGGTGCGTTTCTGGGACCTGCGAGTGCCCAGCTGTGTGAGAGTGGTGGGAACGGCCTTCCACGGCGCAGGCAGTCCTGTGGCGTCGGTGGCAGTGGACCCGAGCGGGCGCCTGCTGGCTGCAGGGCAGGAGGACAGCTCCTGTATGCTGTATGACATCAGAGGGGGGCGTATGGTTCAGACGTACCGGCCGCACTCCAGTGATGTCCGATCGGTGCGCTTCTCCCCCGGAGCTCATTACCTGCTCACAGGATCCTACGACACCAAGGTCATCGTCACTGACCTACAAGGTGACCTGACAAAGCAGCTGCCGTTGACCGTCGCAGGAGAGCATGCTGATAAAGTGATTCAGTGCCGGTGGCACACACACCACCTCTCCTTCCTGTCCTCCTCTGCTGACCGAACAGTCACACTCTGGACGCAGGCCACATAGAGCCAGCTCTGGCCACTAGAGAGAAACGGcacatgtatatacagtatgtgtgtgcgctgtgCTTCTGTTTTGAGTGCGTtatgagtgtgtatttattttgtgttcctgGAAGTTGAGTTCTTTATCGGTGAATGCCTGAGATAAGTGCAGACCTTTTTATTGTACATATTACCTGATTGACTGCCAATGTGTCTGATGGCCCTGAGCAGGGATGTGACGCTTTGCTAGAGTGTGCTTGCTAATGTACGCGCTTCCCATTCAATAACCCTTACCAAACACTGAACCGTCCCTCCCACAGACTCAGTTGTGTCATGCAATCTATACTGTGGccttcctctctctgtgtgtctgctcTCCACACATCTGTATTTGCCTGTTTGAATCTAGCCTCTGGAAATAGATGCAGTATTCATTAGCCGAGTCATTTCTGATATATCATCGCAAACCGTACGAATGCAACGTGTTTAAGTGGAAGATGTACATGCAGTCCAGTGCTTGCCTGTGATATGGACATTATTATGACCTGCTGCAAATACGGTATCGAAATCCAGCTGCTCGTGCAAATATCAAAAGCAACGTTAACGTAAACTGCCTTTGTAAATGCTGTCAAATAAGTCTCATTTAAAGCGGTTAATGTCTGAATTGTAGTCTTTTTGCTTGAAACTGTCTGCAGCCCTTGTGAGTGCCTCTCAACTGATGGCATGATTCAAAGTATTGAATTTTTACATGTAGATGAAGGGAAACTGTCCTATAAATGTCAGTCTATACATCAAATGAAACGTTTTGGGTGTTGGCACATAGGTTTGTTAAACAGGTGAAGTTGTTTGATACTATGACCttgcactttttgttttttaacatccACTTTCTTCAAtagcacttttgtttttgtgtgttatgttgtatatattttttaaatgatgtagattttattatttaatcttaactttttgttattaatgttattaattttcaaACGAAGCCAAACTAACACGTCGACGCATATCGAAGCAGCTCTCATTTGAAGTCATGTGGTGAAATATCGTGTCTTTCCTGTAATCTTTTCTAAGTCATATTTAGACATCGGTGACTACAGTTAAGGCTCCTGGGACAAGTCTGCTGCTCTTgtgtctgaataaaaaaaaaactattctctGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21153 lncRNA upstream 74350 21719918 ~ 21720575 (+) True G14316
TU21152 lncRNA upstream 76933 21716771 ~ 21717992 (+) True G14315
TU21083 lncRNA upstream 173828 21533245 ~ 21621097 (+) False ece2a
TU21112 lncRNA upstream 237527 21556844 ~ 21557398 (+) True G14285
TU21010 lncRNA upstream 424426 21365808 ~ 21370499 (+) True G14212
XR_006252672.1 lncRNA downstream 1597 21810929 ~ 21812903 (+) True LOC122359002
TU21366 lncRNA downstream 39875 21849207 ~ 21850069 (+) False LOC122327294
TU21368 lncRNA downstream 42572 21851904 ~ 21852835 (+) False LOC122327294
TU21373 lncRNA downstream 56406 21865738 ~ 21866839 (+) False fndc7a
TU21375 lncRNA downstream 85276 21894608 ~ 21895131 (+) True G14476
XM_043219111.1 mRNA upstream 1335 21754405 ~ 21793590 (+) True camsap2b
XM_043224622.1 mRNA upstream 78635 21714683 ~ 21716290 (+) True ccl20a.3
XM_043254267.1 mRNA upstream 90031 21702091 ~ 21704894 (+) True LOC122355713
XM_043254274.1 mRNA upstream 90031 21702094 ~ 21704894 (+) False LOC122355713
XM_043223839.1 mRNA upstream 107354 21682031 ~ 21687571 (+) False LOC122328123
XM_043259049.1 mRNA downstream 5868 21815200 ~ 21819162 (+) True LOC122358999
XM_043259004.1 mRNA downstream 9550 21818882 ~ 21827232 (+) True nlrp1
XM_043222534.1 mRNA downstream 34243 21843575 ~ 21853007 (+) True LOC122327294
XM_043219847.1 mRNA downstream 47880 21857212 ~ 21867399 (+) True fndc7a
XM_043222546.1 mRNA downstream 87344 21896676 ~ 21911669 (+) True fndc7rs1
TU21151 other upstream 78638 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 312607 21481676 ~ 21482318 (+) False LOC122354659
TU21005 other upstream 433217 21307407 ~ 21361708 (+) False G14211
TU21370 other downstream 51559 21860891 ~ 21861442 (+) True G14471
unassigned_transcript_253 other downstream 119415 21928747 ~ 21928819 (+) True trnam-cau_1
TU21525 other downstream 881919 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 1735774 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1927719 23737051 ~ 23737122 (+) True trnaw-cca_1

Expression Profile