RNA id: XM_043259103.1


Basic Information

Item Value
RNA id XM_043259103.1
length 3692
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC122359011
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8848327 ~ 8878100 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCAATTCATATTGTTTCaaagatatttaagaaaaaaaatagccaaaaatactgATTGTTCAAGCTGAATGGTTCATGTTGCGTACGCAGCCATTGAGCTtactgctttacatttaaatggctggTTAGCGATCACTAGTGCACATGCACATTCAGATTTCGTCTGAAacactccacctccccagctccacctgtatagatctactgcagtttattatatatgataCTTGTGCAGCAGCAGTCTGAAATACTCTCGGCACCATATTGGCGTATGTATTGGCAGTAGCAAGTTCTTGTACTTCCTTTACAGAAACAGCAATAATctacaacaacagcagcaacgTCTATTCCGCCAAAGACCAAATATAGTAACGTTGTCATATTCGTAACCATGCTAAAATCATCCGAGAGTTCtcataatagaaatatattttcagtagaAACAGCTTGTTTCAGTGTTGGGGAGAATGAGCAATTGTTTTGCTTGTGTGTCGACAAGGCACAGCAGCTGATTTAAGAGGAAGTATCGTGCTGTGTGACACTGTGACAGTGGGGATGGGGCTCTGCGGccgagagagagtgagagagagagagagagagagaaagagagagaacagcaGGTTAGTGGAATCTGAGGCCTTCACTAATCCCATTAGCTGTGCACAAATTGATGCACGGGAACGAGACGAGTGAGGATGACTGCGTTAATCCTACCTCACTGACACCGGCCCTGGTCAGGAAATGAAAGCTCAAGAGGTGTTTGGCACCTCATGCAGTCTTTAATTAATATCTCCAGCAGCATTACCGTCACTGTAGCACTGCCGCGAGAAGACGAAGCAGGACGTGCTCGCTTTTACACGGGAAGTGCGGTTGACAGGCGGCCGGCTCGGCCAATGGAGAAGCTCTAGGATAGAAAGGATGTATTGTGCTGCATTCTCTCGCATTCCTCCCCCCACCGCTGCCTCCCTCTTCTGCCGCTAAAGCCAGCCTCCGCTACTCTGGTATCCTGGATACGCTTCACAGCACCGCCAGCCGATTGGCTGGGAAggatgagagaaaaaaaaaacgggagCAAAAACAGAAGTCAATTCAgggagatggatggatggttttTGCTAGAGCCGCTAAGCATAGATGCAGCAACCATTTCCGCCCCTCAGCTTTGCATTTTGCAAAAGGGACGGTGAAAAGAGAAGGAATTTCAAGTGCGTTAATCAGATCCAGGGGAATTAACACGGCCGTGCGTTTAAGCGGAGCGGTAGGACGAGGGACGGGAACGAGGGGGAGGCAGTGAAGGGGAGCGTGGaaggagaaaaacagacaggaagGGGCACAAAATAGCACAGAAGGAGAAGAATACATGGAGGCGGAGAGACACATCCACCCCTGCTCCTGACATCAGCAGTGCGCGGGGAAAGATCCAAAGGGAGTGAGggacgaggaggaggaagatAGCGTGCacgcgagagaaagagagaaagaacgaGAGGGGAACGGAAAGGAAGTGAGCAGGTAACTGTGGACGTGGAGGCTCTTCCCCTTCCCCCCCACGTTTCACCGAGAACACTGAGTGGATCCGGCCGGCAAACCGTGTGCCATCGAGCGTTCGCGTACAGACCTCTTGGCGACGGGGCTTCCGGCGCCATGGCTCGTGGAGGCCAGCGAACGACGTCTCGGCAGGGCATGGCTCACTTCCTGTTGCGGTGCAACCTCAGCCCGGAGGCCCAGAAGGTGGTGGTATTCGTCATCATGATGTTGCTGGTCATCATCAACGTAGTGCTGATGTTCCTGCTGGCCTTCCAGTAGGGCGCAGCCGCAGTGAAGAGAAAGAGCGAGGGGAGGGGTGGCGAGgaagacgaggaggaggaggaggaggagggaaagTTGGTCCCTCACGCTCACTCGTGGATGGGTTTTCAGGATGCAGACATCACAGTGCAGCTGATCAGTGATGGCAGCGTATGCGCGGAGGCTCTATGGGACCACGTCACCATGGACGACCAGGAGCTGGGCTTCAAAGCTGGAGACGTCATTGAAGTAGTGGACGCCACAAACAAAGAGTGGTGGTGGGGCCGGGTGCTGGATAGCGAGGGCTGGTTCCCCGCCAGCTTTGTTCGGTTACGGGTGAACCAAGATGAGCCCATGGAGGAATACTTAGCTCATCTGGATGGGGCCTCAGAGGGGGGTGGGGCCAGCATGGGGGGCCCCTTAGGGCCCGGTCTGCCTTGTAAAGAGCAAATGAGAGCCAACGTCATCAATGAGATCATGAGCACAGAGAGGGATTACATCAAACACCTGAAGGACATCTGTGAGGGCTATATAAAACAGTGTCGGAAGAGGACAGATATGTTTACTGAGGAGCAACTGCGCACTATCTTTGGGAACATCGATGAGCTCTACCGTTTCCAGAAGAAGTTCCTCAAAGCCTTGGAGAAGAAATTCAACAAAGACCATCCTCACCTCAGCGAGATTGGCTCCTGCTTCTTAGAGCACCAAACAAACTTTCAGATCTACTCTGAATATTGCAACAACCACCCCAATGCCTGCGTGCAGCTCTCCAAACTGATGAAGATCAAGAAGTACGTGTTCTTCTTTGAGGCCTGTCGTCTGCTCCAGAAGATGATTGACATTTCCTTGGATGGATTCCTGCTTACTCCTGTTCAGAAGATCTGCAAGTATCCTCTGCAGCTGGCTGAACTGCTGAAGTACACCAACCCACAGCACAGAGATTATAAGGATGTGGAAGCTGCCTTAAATGCAATGAAGAATGTGGCCCGACTGATCAATGAGAGAAAGAGGCGTCTGGAGAATATTGACAAAATTGCTCAGTGGCAAAGCTCCATAGAGGACTGGGAGGGTGAAGACATCTTGAGCAGAAGCTCTGATCTGATTTTCTCAGGAGACCTGACCAAGATCTCCCAGCCACAGGCCAAAGGCCAGCAGCGAATGTTCTTTCTCTTTGACCACCAACTGGTTTTCTGTAAGAAGGATCTGCTTCGGAGGGACATCCTGTACTACAAGGGTCGGTTAGACATGGACCAGATGCAAGTGGTGGATGTAGAGGATGGGAAGGATAAGGATTTTAATGTGAGTGTGAAGAATGCCTTGAAATTATGTTCTCCTGGGGGAGAGGAGGTCCACCTTCTGTGTGCCAAGAAACCCGAGCAGAAGCAGCGCTGGCTGCGAGCCTTTGCCGATGAGCGGGAACAGGTCCAGCACGACCTCGAAACAGGTTTTACGATCACAGAGGTCCAGAAGAAGCAGGCCATGTTGAATGCATCTAAAAGTCATCCAACAGGGAAGCCCAAAGCATTAGCTTTACAGCACCTTTTGGCACTCAGAAGTCCTTCACTTCTTCACCCAAAAGCTTCCAAGTGCCTACGTTTTTCTGAACCTACGGGACCTCTGGCTCCCAGGGCCACTTTAACTTCACCTCTCCTCCCTGAAGGCCCTCAGCGTAGGCAGGGGCGGGGGGTTAGGGTGCCCCCTGGGGTCCTGCGCAGGGCCATATCTTGGGTGTCCTCTCAAAGTAGAGAGCCGATCGAGTAGTCCAGGCTGTGACCAGGCCCTACTATGACTTCCTGCTGCGTCAGAAGCACCCCACGCTTCCCACCTCCCTTCCCCAGCAGCAGGTCATCATGTTGGCCGAACCCAAACGCAAGACCTCCAATTTCTGGCACAACATCGGACG

Function

GO: NA

KEGG:

id description
K05769 ARHGEF4_29, ASEF1_2; Rho guanine nucleotide exchange factor 4/29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15453 lncRNA upstream 67153 8798591 ~ 8798996 (+) True G10371
XR_006252375.1 lncRNA upstream 100698 8762839 ~ 8765451 (+) True LOC122356731
TU15319 lncRNA upstream 277075 8587377 ~ 8589074 (+) False G10284
TU15463 lncRNA downstream 2740 8879942 ~ 8880453 (+) True G10374
TU15539 lncRNA downstream 52302 8929504 ~ 8930073 (+) True G10431
TU15541 lncRNA downstream 62767 8939969 ~ 8941186 (+) True G10433
TU15556 lncRNA downstream 178521 9055723 ~ 9056245 (+) True G10445
TU15557 lncRNA downstream 179888 9057090 ~ 9057859 (+) True G10446
XM_043262402.1 mRNA upstream 24415 8830820 ~ 8841734 (+) True LOC122361595
XM_043253247.1 mRNA upstream 203826 8651917 ~ 8662323 (+) True amer3
XM_043222148.1 mRNA upstream 214603 8630412 ~ 8651546 (+) True atr
XM_043258048.1 mRNA upstream 266554 8590241 ~ 8599595 (+) True atp1b3a
XM_043216854.1 mRNA upstream 379245 8465574 ~ 8486904 (+) False clcn2a
XM_043217443.1 mRNA downstream 13571 8890773 ~ 8929310 (+) True vav3b
XM_043224154.1 mRNA downstream 210492 9087694 ~ 9154434 (+) True col11a1b
XM_043256072.1 mRNA downstream 285409 9162611 ~ 9170967 (+) False olfm3b
XM_043256064.1 mRNA downstream 285409 9162611 ~ 9169785 (+) True olfm3b
XM_043254902.1 mRNA downstream 296651 9173853 ~ 9180307 (+) False tecrl2b
TU15202 other upstream 758372 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1283764 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 1879030 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2173774 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 2175370 6690372 ~ 6690779 (+) True G9887
XR_006252402.1 other downstream 285409 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 869392 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 1034426 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 1034426 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1833928 10711130 ~ 10718194 (+) True G10979

Expression Profile