RNA id: XM_043259186.1


Basic Information

Item Value
RNA id XM_043259186.1
length 5651
RNA type mRNA
GC content 0.49
exon number 18
gene id rasal2
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16561384 ~ 16612466 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCAGTCGCTCTCTCGCTGAGACACATTTGCTCAGCATGTTTCTTCAAGGAGGTCTCGGGGACGGTGTTATCTGCTATGTCAGGCATCAAATTTAGAGTATTATGCTTGGATAACTTGGTTGGATCCAGCCTAGCTCATCGAGATGAGACTATGATGCAATTGTTAGCATTTGCAATGGACTAAAATTGATTTTGGCTTCCTGTTTCTTGATATTGTTAAGCTTTTTTAGCTTTTCTCTCCTTATCAACCATGAATTTACAACAGAAAGCCATATCGGAGGAGCAAACGGGGTCAAACAGGAATCCATCACGCTGTTCTTCTGGCAGAGAGAGCGCTCGTCGCTGGCCTCTCCTCAGCAGGCCTTGGCTAAAGCACCGTTCAAATTCAGCCCCCGAGGAACCCTTGGACGTACTTGACAGAAGAAACCTGACTGGACAGAACATGCGCACACAGAGCTTGACATGGTCcagaagcagcagcagtatgGCTAGATCCAATCCTCCAATCTCCAGGGTCCACAGTCTCCCAGACCCCCAGAGAGTCACCAACTGCGGTGTCCTCCTGGAGCATCCTAATCTTCAGAGGGACTGGCTATCTCGCAGCTCAACCCCTTTTTTAAGATCTACATCTGAGCAGGGGAGCGAAATTCGTTCTGAGACTCCACCGCTCAGACGAGGGCTGAGCTCTCAAACTTTTTCTGGGATTCTGCTGTCCATGTCAAGACGAATTAGCCAAATTTTAAATCCTTCTCCTGAGTCAGCTGTTGGAGAACTTTCAGAAGACGATGTGAAGGGGCCGCCCAGCCATCGCTTCTCCTGCGGCCAGTCGCCGTTCACGGAGCCCTGCGTTTGGGAGAGGAAGTACTGCATCCTGACCGATAGCCAGCTCATCCTGCTCAACAAGGAGGAAGAGATGCCATCTGAGATCCATGAAAGCCCCACAGCATCCTCATCAAAGAGTCGCAGCCTGAGAAGGACAGTCAGTGTGCCCTCTGAAGGACAGTTCCCAGAGTATCCACCAGAGGGAACCTCCATGTTAGAAGCGTCTGCGGAGCGCTCTCCCAGACGGAGGAGCATATCGGGGCTGGGCAGCTCGGAGAAGAACATTTCCATAGATGGCCCCAACTCCTCACCCTTCAAAGTGCCTGGTTTTTTAAGTAAACGACTGAAAGGATCTATCAAAAGAACGAAGAGTCAAACAAAGCTGGATCGCAACACAAGCTTTAGACTCCCATCGCTACGACCAACAGAAAATGACAGGTCACGAGGCCTGCCCAAATTGAAGGAGTCCTGTTCCCATGAGTCTTTGCTGAGTCCAGGCAGTGCTGTTGAAGCTCTCGATCTGAGTATGGAGGAGGATGTCTACATCAAACCTTTACACAGCAGCATTCTCGGACAAGACTTTTGCTTTGAGGTGGCATACTCAGGTGGAAGTAAGTGCTTCAGCTGCTCCTCTGCAGCCGAACGAGACAAATGGATGGAGAACCTCAAGAGAACTGTGCAGCCTAATAAGGACAACTGCAGACGAGCGGAAAACGTCCTCCGCTTGTGGATCATCGAGGCCAAAGATCTGCCCCCAAAAAAGAAGTATTTCTGCGAGCTGTGCCTGGATGACGTGCTGTACGCCCGCACCACCAGCAAAACCCGCTCTGACTGCCTGTTCTGGGGGGAACACTTTGAGTTTTCTGGCGTTCCGTCCATTAAGAGCATCACCGTACACATCTATCGTGATGCggacaagaaaaagaaaaaggacaaaaacaactATGTGGGCCTGGTGAACATACCGGTGCAGGGAGTAATGGGAAGGCAGTTTGTGGAGAAATGGTATCCGGTCAGCACCCCCACCACCAGCAAAACCAAAGGTGGAGGCCCCTCCATCCGCATCAAGTCTCGCTTTCAGACTGTCTCCATCCTGCCCATGGAGCAATACAAAGAGTTTGCTGAGTTTGTAACCAATAACTATACCATGTTGTGCTCTGTGTTGGAGCCCGTCATCAGCGTGAAGAACAAAGAGGAGATGGCCAGCGCACTCGTGCACATACTGCAGAGCACGGGACGGGCGAAGGACTTCCTAACAGATCTGGTGATGTCGGAGGTGGATCGCTGCGCTGATCATGACGTGCTGATCTTTAGGGAAAACACGCTAGCCACCAAAGCCATCGAAGAATACCTCAAATTGGTGGGACAGAAGTACCTGCATGATGCTCTAGGAGAGTTTATTAAAGCCCTTTATGAGTCAGATGAAAATTGTGAAGTTGACCCATCAAAGTGCTCTGGCAGTGAGCTTCCAGAGCACCAAAGTAACCTGAAGATGTGCTGTGAGCTGGCCTTCTGCAAGATCATCAACTCTTACTGTGTGTTTCCACGGGAACTGAAGGAGGTGTTTGCATCATGGAAGCAGCAGTGTCATGCTCGAGGAAAGCAGGACATCAGTCAGCGTCTGATTAGTGCATCGCTCTTCCTGCGTTTCCTGTGCCCTGCCATCATGTCCCCTTCGCTCTTCAGTCTCATGCAGGAGTATCCAGACGACCGAACCTCTCGAACACTCACCCTCATTGCCAAAGTCATCCAGAATCTCGCTAACTTTGCCAAATTTGGAAATAAAGAGGAGTACATGGCCTTCATGAATGACTTCCTGGAGCATGAGTGGGCTGGTATGACCCGTTTTCTGCTCGAAATCTCAAATCTTGAGACTATCTCCAACACCCCGGGTTTTGAGGGCTACATTGACCTGGGCCGCGAGCTGTCGGTGCTACACTCACTGCTGTGGGAAGTGGTGTCTCAGCTGGACAAGGCAACGGTGGCCAAATTGGGGCCCCTGCCGCGTATACTTGGCGATATCACCCGCTCGCTGTCCAGCCCCACCCCCATCCAGCAGCAGCTCAGGCGCTTCCAGGACCACAGCTCCGCTCATGACATCAGTGGGAGTGTGTCCTCAGGACTGCAGAGAATATTTGAAGACCCAACAGACAGTGAAATGAGGAGCATCAAATCTCCTGTTCAGGAGCACATGGAGGCCTTAGTCCGAGGGAAGCATCCTTTATTGGGTCAGCAGTCCTCCACTCACAGCATGAGCTTTTCTGACAAAGAGGAGCGAGACAGTCCACTCCCGAATGGACGCAGTATTTCTCTAATGGACCTGCAGGACTCTTACCTGGCACAGGGGCATCCAGCTCCTAACTCTCTCAACGAAGCCCCACCTAGATTAGGTCGAGTGGGCTCTCAGGCCTCCATCGGCCCTGTCCCACCTCCGCACATCCACCAACCCCCTGTCCATCTGAAAGTTCCCCAACTAAGAGACAACTTGCCGCAAAGTGCCCCACAAGTGCGGCGCCCTATACACCCCTCCCTCAGCCAGCAGCGTAGCCTGCAACCGCTGTCCTTTCAAAACCCTGTTTACCACCTTAGTAACCTTCACGCACAATCCACGCACTCAACCCAGTCCACGCACTCCGCCCAGTCTCTACAGCCGGACTCTAGCTCAGAGAACCTGAGCACGGGCAGCTCTCGGAGCGGCAGTCCCAGTGCATCAGGGGGCCGGGGAGCTACTCCCAGAGCACGGATGCCCTCCACCAGCAGTGTGGAGGAAGAACTCACCCGCAAAAGCATTCAGGGACAAGAAACACCTCCTCCAACAGCACGCTGGCACCCTCCTTTGGCAGACCATCACTCGGGAGCCCAGGTTGTGGCAGTACCGAGGCAGAGCAGCGCAGGTACGGCGCATATAGTGAAAGTAGAACAGCAGAGTCGAGGAGTGGGACTGGTGGCAGGAAACGCAGTGGCGCGAACTCCAAGATCGCTTCCTCACAGCACTTCCCTGCGTAGCAGCAGCAGCGTCAACACTGAACCCATGCAGCAAAGCGGCGAGAGATCCAGACAGCAGTCCACGTGTTCCAGAGACGGTTCGGTTCCAGGAGGACGAGGCACCAAACAGGTCCAGTCGCCTGTAGAGTCAGTCACCATGTCACCAGTGGAGCGAACGGCTGCATGGGTCCTCAATAATGGCCAGTatgaagatgaggaagaggaaggaccAAGCAAAGATGATGCCAAACATGTAGAGAAGTATGAACAGGAAATCGCCAAACTGAAAGAGCGTCTTCGGGCGTCTAGTCGGCGATTGGAGGAATATGAGAGGCGGCTTCTAGCACAGGAACAGCAGATGCAGAAGCTGCTCTTGGAATACAAGGCTCGACTAGAAGACAGTGAGGACCGTCTGCGCAGACAACAAGAGGAGAAAGACAGCCAGATGAAGAGTATAATCTGCAGGCTGATGGCCGTGGAGGAAGAACTGAAGAGAGACCATGCAGAGATGCAAGCGGTCATAGACGCCAAACAGAAGATAATCGATGCACAGGAGAAGAGGATCAGCTCCCTGGATGCAGCTAACTCTCGTCTGATGAGCGCCCTCACTCAGGTCAAAGAGCGATACAGCATGCACAACCTCCGCAACGGCCTGTCGCCCACCAACCCCACCAAGCTCTCCATCACCGAGAATGGAGAGTTCAAGAACAGCAGCTGCTGATTGGTGCTCACGGACTTGATGAGCCGTGCCGATTGGTGCTCCCAGACAGATCACCAGCACCGATTGGTCGAGTTCAACACGGACTGAGTACTTAGACTACATGCCTAAACTGACTGACTACTGTATACATGCGATTGCAAAGGAATGTCTggttattaatgtatataaacgTTATCTAATATTGGTTCTGTACAGAAATGCTACTGCAGTGGAGTGTTTTGAAATTGCGTGGGAGAGTAAAGTGTAGTGTCGGGTCTGAGTCAgtgagtttgtgttttgttttgttttgttttttttagtactgATTTACGCATAAATGCAGATTTAAGATTgcaaacagatttttaattattgcctAAGATATATGAAGGAGATGTACATATCTTAAAAtagaattgttttaaaagaaaatatgaagaaaaGCACATAGGTATCGGCCGTAGCTGTAAATGTCCTCAAGTTGCAGAATCTGACAGGCAGAAATAGATGAAAGGCAATTTTATGCACTCAGTTTTCTAacaagttttctatttttttttttttttttttgggctctCATTTTGCAAAAGGTGTTATTACTGATTTTAGACGCAATTAAGCCAGCCACTGTTCAATTACAACAAATCtagaacatatttaataaattcaaatacgtgttcattatttttactaaaaatatgaCTGAAGCAGTgggtttaattaattaaaattttcaattGAATTAACAAACTGGATTAATTgaactgaattttaattttgacataTGTAGGCTATTTTACTGGCACTCAACCcaacttaactttttttaatttattttttttggctcTGTACGTTTCATGTATCTGACCAGAGTGCTGTGAAACCATCAGTCTACAGTCTCACTGCCCTCTTGTTCTAGACAGTCTCACTGCCCTCTTTCTGatcctgttttttgtttgtctgctaCTTTTATTGAAAGTCATTGTTTTTCCACTGTTCTCACTCTGTCCATATGAGCATCAATGCCTTTAACCTTTTGTGGCACAGAACTCCTCAATGTTTGCTGTTCTCGTAGCGATATATTTGATGGTCAGTCTCAAAGTTGAAAGCTGAGCATTGAATAAAGATGGATTGTGGCCTCATT

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18588 lncRNA upstream 104852 16450153 ~ 16456532 (+) False LOC122323293
TU18524 lncRNA upstream 296464 16263774 ~ 16264920 (+) True G12530
TU18505 lncRNA upstream 526476 16032772 ~ 16034908 (+) True LOC122359940
XR_006252739.1 lncRNA upstream 526758 16032757 ~ 16034626 (+) False LOC122359940
TU18481 lncRNA upstream 682980 15878134 ~ 15878404 (+) True G12491
TU18628 lncRNA downstream 78460 16690926 ~ 16693619 (+) True G12607
TU18741 lncRNA downstream 119271 16731737 ~ 16776351 (+) False LOC122361622
TU18738 lncRNA downstream 120755 16733221 ~ 16776351 (+) False LOC122361622
TU18740 lncRNA downstream 122339 16734805 ~ 16776351 (+) False LOC122361622
TU18737 lncRNA downstream 123908 16736374 ~ 16776351 (+) False LOC122361622
XM_043220290.1 mRNA upstream 14372 16545336 ~ 16547012 (+) True ankrd45
XM_043263630.1 mRNA upstream 53486 16501052 ~ 16507898 (+) True plk3
XM_043253919.1 mRNA upstream 61682 16497709 ~ 16499702 (+) True LOC122355504
XM_043217636.1 mRNA upstream 64163 16495941 ~ 16497221 (+) True mrps14
XM_043217035.1 mRNA upstream 106171 16450366 ~ 16455213 (+) True LOC122323293
XM_043219821.1 mRNA downstream 1310 16613776 ~ 16623033 (+) True dhx9
XM_043264338.1 mRNA downstream 13379 16625845 ~ 16670329 (+) True lamc1
XM_043218730.1 mRNA downstream 64673 16677139 ~ 16689372 (+) True lamc2
XM_043258692.1 mRNA downstream 88611 16701077 ~ 16718102 (+) True smg7
XM_043258700.1 mRNA downstream 88611 16701077 ~ 16718102 (+) False smg7
TU18526 other upstream 292587 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 1778407 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1778680 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 2381769 14175364 ~ 14179615 (+) True G11854
TU18915 other downstream 419853 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 749779 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 954375 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 994786 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 1166873 17779339 ~ 17782364 (+) False LOC122325453

Expression Profile