RNA id: XM_043259254.1


Basic Information

Item Value
RNA id XM_043259254.1
length 8171
RNA type mRNA
GC content 0.42
exon number 9
gene id xirp1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10710965 ~ 10726846 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGACACCTGAGGTCAGGCTGTAAATGAGGGACTTTGTCCTGTGTGACAGGAGTGTCTTTTGAGTGATGCTCCACTTCACACCGCACAGCGGAACAGAAGGAAATGAGGAGTGCAAGACCGATCGCTTAAGATGAGCTTTACCTTGAGAAGAAGTCAATCCCTTAAGAGCCTCTCTGGAGGTCATAGTTCACGGTCCACATCAGAGGTGCTGTTTTGGGACAGAAGGACACCTGTCTCTGAGCTCGTAGAAAGGTATGAAAGCTGTGTGGATCTCACAGACGCTGACAGAGAAGAGGCCTGTTTTAAGACATCTGGCCTGAGAAGAGCAAACTACGATGAGAGTAAAGTTGAAAATCTCTGGAGGAGATATGAGTCCCTCAGTGGAAAAAATAACACTCTGTCCAGAAGTATTTCAATGGACATGCTGCCCCAGCCAGACCTGGTGGGCCCTAATGCTCAAAGGAGCCTGTTTGAGTCGAAGAAGCACGCCAGCAGCCCTCGGCTCAACGTCACACCACAGACCAAAAGCAGCCCGGTGAGTGCCATTAGCTCACAGTGGAGGGAGGCACCGACCGGGTGGGAGAAAGTCTATTCTGGTGTTACTACTGTCACCAGCGCTAAAAAGGACAAGGCTCATCAGAAGGAAAAAACCTACGATGAGACAATGAGAAGGAGGACAATCAGTGGGGTTCCTGGATATATCACCCGATCCTCCACTGAACTGAGCGATAAGAAACATTTCAAGAAAGACAGAGAATCTGCCTCCTATCAAGACCACAAGCCGAGGTACACATCCTCTCCTATCCCAAGTGTGAAAGACAGATCTGCCCTTTACCTCTCAAAGGTAGCAGCTGCAGACTCCTCAGGATATATCGAACAGCAAGGCAGTTTGTTCCAGGAGCACTTGATCTCAAgcggaaagaagaaaaaacagagcAAGATGGCAGAAAAAGCCAAACAGATAAAAGTGACAGATGCCTTCTGTGGAGATGATGattttcctcctcctccacctcctctaCCAAGACCTCAGGTTTTGGAATCACTTCAAAAGGAACAAAGCCAGAATTTCCTCCCTGTACCACCTCCAAAAGAAACCTTCTCAGAGTTCTACCAGCAACGTCAGAAAAGCGAACTGAAGCGtctttttaaacacattcatCCCGAATTGAAGATGAATCTTGATGATGTAGATGATGAACTGATAGACGCAATAAATCCCCAAGCAGCAGACACAGCATATCAGGGAGAAGTGCAGTCCATGCGCTGGATATTTGAGAACTGGACTCTTGACAATATTGGAGACCCACATGAAACtaaaaaacatctcaatgaGGAAAGTCTTCAAGGTGGGGATGTGAGGGGCAAATCCTCCATGTTTGAGCATTCAGTGTTTGATAATCAACACACAACAGCAGGAGACAGGCCAGGGGTAGTCAAAGGAGATGTTCGCACTGCCTCCTGGTTGTTTGAGACACAGCCCCTAGATTCAATCAGTAAGTCAAAGATGGAGAATGAGGAAATTGTGGAAGTTGTACTGAAGGAACCCGTTCAGAAGGGAGATGTAAGAGGTACACGTCTCCTGTTTGAATCCAAACCATTGGACGCTTTAGGCCGCTGCTGCTCTGTTGAAGACCAACACTTTTTAACACTCAAATCAGAACTCCAAGAGAATAAAGGAGATGTGAAGAAAACCGTCAAACTCTTTCAAGCAGATCCCTGTTGTGCAATTAGGGATAGCAGTGGTAAAATCCatgaaatcaaatcaatctGTAGAGAAGAAATTCAAAGCAGTGAATTCAAAACTGCACGTTGGCTTTTTGAAACTCAACCCTTGGACCACATTAATAAAGGAGCTCATATGCAAATCATTCGAGGGATCTCACTTGAGGAAGCACAGAAAGGTGGTGTTGATAAGAAAAAATGGATGTTTGAGACCCAGCCGCTTGATGCAATTCATGAAGGTGCTGTGGAAGAGCAAAAGTTCAAAGGAACAGTGGAGGACATCTCTGGGGAAGCAGATGTTCATAATAAACTAAAGATATTTGAAAATCAACCCCTGTCAACTCTTAAAGGAGAGTCTGGGGGTGAAATTTCAGAAAAGGAGGCAATTGTTGGAGGAAATGTAGGATCCACGCTATGGCTATTTGAAACTCAGCCTATGGACACTCTTAAAGACAGCTATGAGTTAGGAGAGCTCAAGAAAGTTGTGGTGTCAAGTGACGAAAAAGGTGAAGTTAAAGACAAAAGACTACAGTTtgaaaaatgcagctttggtaaaACAACAATTGACAGTGGAAACAAAGttcaaaatgttgaaaaagGAGATGTGAAGACTTTCAAGAACCTTTTTGAAACATTCCCTCTTAGTAACATCTCTGAGAAAGCACAGAGTCAAATCCACGATATTACAGCTGGGGATGTCAAAAGCAACTGTTCACTTTTTGAAACCACGCCGTTGTATGCAATTAAAGACTGTGCTGGAAATTTCCACGAGGTTACAACTGTCAGTAGAGAAGAATGCATTGAAGGGAATGTACAGAATTACAAATGGATGTTTGAGACGAAACCCTTAGACCAATTTGAAGGAAGCAGTGGAAAAGTAGAGCTCATCCAGGGCATTACAAGGCAAGAGGACATGGCAGGGGACGTGAGGACAGCTAAATGGATGTTTGAAACACAACCTTTGGATTGCATCAATGTAAAGAGTAGGAACGAAGCAGATTCAACAGTAACACAGGAGGAATTTCAAAAGGGTAATGTGAAGACGTGCAAATGGCTGTTTGAGACACAACCAATGGACATTTTGTATGAGAAATCAGAAAGGAACCAGGATGTAGAGCCAGTGCCAAAAGCTGATGTGAAGTCACACACTTGGTTTTTTGAAACACAGCCACTGGATAGCAATAAAGACAAGAAGGACTTCAGTTTGAAATTGTGCAGTAGAGTGCAAGAAGACATAAAATGTGATGTGAATGTGAAGACGGTAAAGCACCTGTTTGAAACAGAAACTTTGGACAGAATAACAAAGCAAACAGATTCTGGCCACAATGTAAGATATGTCAGTCAGGTGGATATGCAGTCTGGAGATGTCTCACGTGTCAAGGAAATCTTTGAATCCAAGTCACTTCATGAACTAGGAAGTGAATGTGAAAAAGACTCTAAGGAGCAGAAAACCGAAATTCAGTCAGGATCAGTCAACAAATTCACCTGGCTGTTTGAGAATCAACCTATCAGCGACATTAATGAGAAGGAGGACAGAATAACTCAGAGTGTCAGTGATGTTGAGGGTGGTGATGTTGGAAGCaagaaatttatttttgaaactttCTCTCTGGACAAAATCCAGGATAAAGACAATCTGCTTGAGCACCAGTCAATGAGTGTTGAGAAGCCCACAAGCAGTAGTGGTAATGTGAAGTCCAGCACTATGCTTTTTGAATCCCAGCCGTTATATGCTATAAGAGACAAAGACGGACAATTTCATGAAGTTACCACTGtaaagaaagaggaagtgatgaGAGGAGATGTCAGGGGTGCAAGGTGGATGTTCGAAACCAAGCCACTGGATACCATCCAAGCAGACAAAGAAATCTACATCATCCGTGCAGTAACACAAGAGGATGTATGCAAAGGAAATGTGAAATCCGCACGTTGGAAGTTTGAGACTCAGCCCCTTGACTCATTCACGCCTCATGAAGGGCCCTCGGTGAGGGTTGTTGAAGATGTAGGCAATGGGACAAGTGTGCAACAAAGCAAGCAACTTTTTGAGACCGAGCAAGAGGGCCAAAAGAAGTTTGTGCGAATGGTGAGTGTTACAGACGTTCAACAGGGTGACGTACGTACCTCAACCTGGCTGTTTGAGAATCAACCTATAGATACTCTAAAAGGTGAGCCAGATGAGAACACCACACTGACAACTGTACATCGAGAGGATAACACAAAGGGAGATGTAAAGCGCTGCACTTGGTTATTTGAATCGCAGGCCTTagataaaataaagagagaTGAATCTACTGAAGAGCTTACTTCAAAGGAAGAAATCCCCAAGGCAGATGTCAAAAGCACAACCTGGTTATTCGAGACCACGCCGCTGGACAAAATCACTGTAGAGAGTGTGACAGACATACTCTACCGACTTTGccattatgcattcattcattcaagtgGAATCATCATCCAGGCAAATGACTATAACTATGTAAACATGGCAAAATATCAGATTGTCAAAAACGAGGGGCCTAAAGTTCAAAAGGAGGAAGTTGTTGAAGGAAACATCAGGAACATAATGCTGCAGTTACTGTTCAAACCTAACCTGAAACCTAAAGTTGTTTTACTTAAAGAGGATGAACAAGGCAAGATGCACAGCACAGTGCTTGAAATCCCACTGGGATCCACAGATAACCCTGAGGCAGAGTGTAAGACCCAAGAAGCAGTTAAAATAATTGAGAACTTGCTTCTCCAACAAAAAACTCTCAAGACAGGCTTGGTGATGCAAGAATCTGAAGGTGGACAGCCAGAGATGACAGTTTATTCTCTGTACTGTCAAAGCAACTTGACTGAGTCACAAGACATCGCACGAGGAGATGTCAGATCTACAATTGGCAACCTCCTTGCCACTGCTCACAACCAGCAGACCAAATCATCTTGCAGACTGGAACAAAACGAAAGGGGGAATGTTGATTTGTATCGAAGCTGCATTGAAAAAGGCGACCTTAAGAGTCTACAGCAAGAACTTTCTGAGGAGGAACTGTCAGCCTCTTGTAGAGATAAAATTGAAATTATCCAAGGTGATGTAAAGGAAGCAAAGCGACACCTGAATCAACAAAGAGAGCAAGTTGAAAGAACGGTCTTGGATGTTGTACCAGGAGATGTGAAGAATGTCAAAAAGGTTTTCTCAGAGGTCGGCACAGACCTAGGTGTTGGAAACAGTGTGCAAAAAGAGGATATCGTCAGAGGTGATATTTTGTCAGCCAAGCAGCAACTTGATGAAGCAGTCAAACAGCCAGTCATGGTCCAGAAGGCGGAAATTGTTTCTGGAGACATTAAAGCGACCCTTGAATCCTTGGAGCGGGCAAAACAACAAAGCATGCATGTGGAGCGCGAGGTCATCAAACCAGGCACTATTTACGATCTGAATATAGAGGCAGAAGAAATCTGCTCAGAAGAAAGTGAAAGGAAATTAATTAAGGAGGAAATAATTTCAGGGGATGTTAAGGCTGCCAAAAGATCCCTGGAGAGAGCAAAGAACCAAAGCATGAGAGTGGAACGAGAACCTGTCACTCCTGGAAAGCTATATCTTCTAAATGAATCATCTCAGTGCCAAAGCAACACAACAGTGGAGCAGTCTACAACATCCTCCTTCAGTAACCAGCGGATTACTACAACATTTCGAAAGGTTAGTGATATAGAAAAGGATCAGGGATCCAACGAGATAATTTATTGTCAGAATGAAGTGGGAGATAGagaaaacataatacattttagtacaGAGAATGACTCGAGAGCGATAGATAACAGTGCTAAAGTTTTAGAATTAGAGCCATATATTAAAGGTGATGTGAAGGCTGCAATCCAGTCATTGCAAAGTGCTGTAACAGAGCAGAGAAGTGTAATCAGGGAGGAAGTTATTAGAGGTAATATGCAAGAGACACTCCAGTCTCTTGAGAAGTCTAGCATTAATATTTCTAAAGGAGATTTCAAGGCAGCAATGTTATTTAGACAGTCTGGACAGTCTTACACACCAAGCAGAATGACAGATGACTCAGGGACTATAGATTGCAAGCAGAGTTGTGTTAATTTGCCTTCATCTGACACTAAATTGTCTTCTTCGGTTTCAGTGACCGGAAGTGAGCATCTGACCATCTCGGCACTGAATTCAGAATCTGTTAGCTCCAATGAGGACTGTTCAAAGCTCTCAATCCCTttcgcaggaaaaggcaaacaTCCACTGCCCATACCTCTAAAAATTGGAAATCAGGTTAAAGATCAGAAGCCAGCTATTCCACCAAAGCCATTACATATCACCAACAGCTCCAATCATATTGCAGAAACCCCACGTATTTGTCCAAGCTCACCTGAGCATCTTATCATTAAGCAACAGACTCCAGCAATCCCACACCAAGTTGCTCCCAGCAAcaattatttgcataaaaatgaaatgaaggaaAAACCATGCAACATTCATGAACCAGTTCAAAGTACAAACTTCACCAATCCTATGGATTTTCAGAAGATGCAGTACACTGAACAATGGGTTCAAAATTCTCACATGCAACATATGGACACTTCACCAGTCAGTAAAACAGAACCTCTTGATGATGGATCTTTTGCTTCTAATGGAATAGGAATGGAGAAAAATGTGATTCAGAGGATAAATGCTGCAGAGGAGATCAGGATGTGCATGCAGActtattcaaaagaaaaggaTGAATTAAACAAAGGTTTTAAGGTTGCACTTCAGAATTTTGGAGAAAAGAAAACTAAGGACACAACCTCAATTTTCCCAAAGAAAATTCAAGTTGTGCAAAAAGAAACCATCCAGGAACAGGCTAAAACTTCAGAAGAGAACACAAATAAAGCCAAGTTACATTCCGCCAGCAGAAACACCCCCTCAACACCTGAAATACATGAAGTTCCTTCTCAGAACAAAGTTGTTTTGAGAGAAAAGAAAGCtagaagagagacagaagatGAGCGCCGCCAAAGACTTTCCATCCACAAAGACGAGATCATGAAGGGCAATGTAAAAGCAGCCATGGAGATCTTCGAAAACCTTATGAGACGAGAAGAGCTGAAGATCATTTTGTCAAAAGTTCAAGAAATAGAGGGGGAGACTTGTGAGGTGGATGTCAAATCTCTCAAGACTTTGTTTGAGAACATGCCTGTTTGGATAGGCAAGCCAATAAAAAACATGAGACACAGACATCGTCCAAGAGCTGGCACAGAGACAGAGGGCTTAAGAGATGATGTAGAGAGCATATCCTCTGTTGAGTCTGCATTTGAGGACCTAGAGAAAGCAAGCATGGACATCATCAATTTGAAAGAACAGACATTATCTAAACTCTTGGAAATAGAGGAGGCAATAAAAAAAGCTCTGTACTCTGTCTCAAATTTAAAGTCTGAGGCGGACATTGCTGGGCTGTCAGGCCTGTTCAGTGAATCCTTAAATGCTGACAATGTCTCGCCAAATACTAAAAACATTAGGAAAATTAGCATTGTATCCAGCAAAGCAAAACCTGTGCAGTCTAATCAAGTACAGAGCAATGTTAACAGGTGTCTGCCCAAAGAAGTACCACATGTACATCAAGTTCAAATGGGTAATCCAGGCTCAAATGTCCCATGCTCGCCTTCATTCATTTCCATTCATTCTGCTGCAAGAAAGCCTGCGGAGTCACCCACATCCCTACAGCCTCACTCAGATGACCCAAAAGCAGCTGATCAACCTAATGCAGGTAGCCCCTTCAGACAACCCTCCCTTGAGAAAAGCTCAGCCAGCCATGTTTGTAGTCCTCCAAGTCCTAGAAGGAAAGTCAGCATTCTTGAAGTACAGCGCATTCCGGAGGTTGCAAGTGGAATCATTGGCACTAAAACAGTCAGTGAGAAATATGAAGAGATAGACTGCTTTGGAAATACTTACTACTCTTCTCAAAGATCTACATTTGTCACCAGGCAGACCGAGAGTGAATTATCTGCCTCATATGATGTAATTACAAATCCAGGGAGATATGAAGAAATGGCTTTACCCGTTTCGCAACGGTCTGGTCAGACCTTCTCCACAAATTCTCTGTCTAAGAACAAAGacagaaatgtgtttgttaCTTTCAGTCATCCcaacacagaaaaacattaaCCTGTTTTTGTAGATTTCTAgttctatatttctatttaaaacacatatatattattggtccctattttatatgtgtgtacaaCAAAGTTTTATTGTGAGCGAGTTTTTTGTACTGTTGcaattaagtgttattaaaagtgttcatcttaaatactgtatattaaaatgatctaaaataaaGATACTTACAAAGCAGTATTtgttacagttattttattactaGTTAGACAACAATATTTCtctaaaatcatgttttaataattttgaaattcTTCATACTGTGATAATCATGCATAAACTCATATTCCATGTATGTCT

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0030054 cell junction cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16423 lncRNA downstream 41551 10669062 ~ 10669414 (-) True G11063
TU16422 lncRNA downstream 41551 10669198 ~ 10669414 (-) False G11063
TU16425 lncRNA downstream 41998 10667814 ~ 10668967 (-) True G11064
TU16426 lncRNA downstream 42841 10667814 ~ 10668124 (-) False G11064
TU16424 lncRNA downstream 42912 10667642 ~ 10668053 (-) False G11064
TU16474 lncRNA upstream 19189 10746035 ~ 10817620 (-) True G11097
TU16471 lncRNA upstream 19695 10746541 ~ 10819202 (-) True G11096
TU16473 lncRNA upstream 19695 10746541 ~ 10818021 (-) False G11096
TU16487 lncRNA upstream 29743 10756589 ~ 10828152 (-) True G11103
TU16482 lncRNA upstream 30344 10757190 ~ 10828639 (-) False G11101
XM_043259352.1 mRNA downstream 26310 10669470 ~ 10684655 (-) False cdyl
XM_043259342.1 mRNA downstream 26310 10669470 ~ 10684655 (-) True cdyl
XM_043259675.1 mRNA downstream 45895 10664288 ~ 10665070 (-) True LOC122359387
XM_043259267.1 mRNA downstream 55116 10625072 ~ 10655849 (-) True rreb1b
XM_043259378.1 mRNA downstream 86221 10616301 ~ 10624744 (-) False riok1
XM_043259526.1 mRNA upstream 104264 10831110 ~ 10861595 (-) True LOC122359216
XM_043259791.1 mRNA upstream 137225 10864071 ~ 10889273 (-) True col15a1b
XM_043259774.1 mRNA upstream 170708 10897554 ~ 10902625 (-) True LOC122359462
XM_043259645.1 mRNA upstream 428416 11155262 ~ 11159313 (-) True LOC122359349
XM_043261904.1 mRNA upstream 479598 11206444 ~ 11227249 (-) False slc12a7a
unassigned_transcript_206 other downstream 321342 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16347 other downstream 332754 10376063 ~ 10378211 (-) True G11011
TU16135 other downstream 567297 10142043 ~ 10143668 (-) False lmo4
XR_006253077.1 other downstream 571380 10121767 ~ 10139585 (-) False pkn2a
TU15736 other downstream 1191443 9500139 ~ 9519522 (-) False plppr5a
TU16485 other upstream 31182 10758028 ~ 10764891 (-) True G11102
TU16480 other upstream 41128 10767974 ~ 10861554 (-) False LOC122359216
TU16478 other upstream 42669 10769515 ~ 10783951 (-) False LOC122359216
TU16500 other upstream 73870 10800716 ~ 10803288 (-) True G11105
TU16716 other upstream 608885 11335731 ~ 11339597 (-) False trnau1apb

Expression Profile