RNA id: XM_043259267.1


Basic Information

Item Value
RNA id XM_043259267.1
length 7178
RNA type mRNA
GC content 0.45
exon number 14
gene id rreb1b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10625072 ~ 10655849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCACATCCTCAAATGCGCCATTTTGATCGCTCTCCGGAACaagtttgcagtttttttttttctcgaagTCCCATCATCTCTTTTCACCATCACCATGTCTCGGCGCAGTCAGCCCAACCCCGACAAAGTCAAGCTATGAGCAGAGGTCGCTGTCCCTCATCCTGCGCCCGTGACCCTGTGGCTCCATGACCCTGTGACGTGTTTAGCCCAGACCTTAAAATGGAAATGGAAAGTGCCTCCCCTGAGAAGACTGTCAGCAATGCTGTTGGTGCTGCTGATGTGAATGAACAGTCTCATTTGTCAGAAGATTGTGTGAACGATCAGTCTTCCTCTCACACACCAGAACCCGCTGAAGAAGCAGACTCTGATGGAAAGGACAAGTCAGAGCATGgagatgaagatgaaggtgGAGTTAGAACAGAGGAAGAGCTGTCCTCCATCAACTCTATGATGAGCACTGTGATGAGCGTGGGCCAGATCAATGGAGTTGATTCTGAGCCCACCAAAGTATCTCCTAGAAGTTCAACCAAATCGCCTGCTGTCAATCGTACTGGGAGAAGAAATCAGGAAGTCAAAGACGAACGCTCAAGCTTCATTTGCCCCCTGTGTAACAAAAACTGCATGACACAGCACCAGCTCACCATGCATATCAGACAGcatAACACAGATAGTGGGGGCACTGACCACTCCTGCAGTATCTGTGGGAAGGCTTTGAGCTCAGCCAGTTCTCTGGACCGCCACATGCTGGTTCACAGTGGAGAGAGGCCATACAAGTGTGTGATATGTGGTCAGACTTTCACTACCAATGGAAATATGCACAGGCACATGAAAATTCATGAAAAGGATGCAAACAGTATTCCTACCCCAAGTTCTTCCCCACTAAACAAGCGCAGACGACTCTCTAATAAGAAGAAATCCATTGTAGAGGATGAAGTGGAGCAGGCTGAGGAGCCGCCAGTTAAAAAGGTGATGCTTGTACAAAAGTCTGGAGAGGATGATTCTGTTAAGAGTGAAGAAGACATCTTTCATTGCCCAATCTGCTTTAAGACATTCAACTGTAAATATGATCTGGAAACACACATGGAGATGCATCCTGACACTACACTCAGGTGTAACATTTGTTGCATTACCTTTCGCACACACCGGGGTCTTCTGCGTCATAACGCTGCTATTCATAAGCAGCTCCCTACTGATCCTGGACAACCCTTTATTCAGAATAACCCCTCCATCCCTCTGGGGTTTGGTGACTTGGCTTTCATTGACTTCAGCTGTCAAAAGTTTCCCCAAATTGCACAGGTCTGGTGTGAGACTAATTTGCGCAGATGCTCAAGCAAGTTCCATAAATTTGTCTGTGAGGTCTGCAACAAGGCCTTCCCTCTTCAGCAGTCTCTGGATCTCCACAAATCCTCACACAAAAGTAGCGCAGACACCAGCACTGAACCTCAGGAACATAACGCAGATGGTGTTATGGATGCACCCAAAGTTAACTCCCATTCCACGGATTCTAAGAAGGTCAGTGAACAAGTACCACATGTTGATAGTACCGGTTCAGATGGGAAAAATGGCTTCTTGGAGTGCCTGGGTCTCCAACACTCCTCCTTGGCCAAGCCCGCGAAATCAGAAGAGCAACTTCAACAGGAAGTTTTAGACAGCATTCGCTTCATTCGCATTGAGCCACCTTCAACTAATCTACCTCAAGATAGCAGCAACAATCTCGGTGTCTCAACTTTGGAGCCTGTCTCTCTTCAAGCCGTGAACAAGAACACCGCGCTTAGCCTCCTGTCGCTCCAGCCGCTCCACGGTGTCGTCAGTAGCGGTATGTTTGTCCCAATAAGTGGTCAAGCTGCGGTAGAGCTGGCGGACATTGAACAAATCCTTAAGCTCGCATCCACTGTGCCACCTCCTATGTCTCTGTCTATGCTTGCCAAAGGTCTGAGCAGTCCTCCACAGGTGGACCCCAAACAGATTGCTTCTCTGAAGCAAAAGCCCTTAATCACTCCTCGATCCAGCATGGGTGCCTCCACACCCCCTCCTCCCGTCATGAGCGCCCAACAGGCCTCATCGGGCAACATCAGTCCTAGCCTTCCACCCCAAACTGGTCAACAACTGAGAACTGCCAGACAGTCACCAGCCTCCTCTTCGTCCTCAACCTCGTCTTCTCCTACCAATTGGGAAAGTACTCAACTAGGGCCAGATGTCATAGGAAACACCATTATCTCATATGAAACTGGAAAGCAAGAAGAGTTTGACGGCAAGGAGAAGGAATCAAGAGGCAAGAAGGCAGCCAAGACAGAGTATCCCTGTCGGTTCTGCAAGGAGGTTTTTTCCTTCTTAGGCGGCCTCCAGGCTCATATGCGTCATCATCTGGGAGCATCACCATACCAGTGCACCATTTGTAGCTACGCCGCTCCTGACAAGGCAACGCTGATTAGACATCTCAGAACGCACAGCGGCGAGCGGCCCTACGTCTGCTGCCTCTGTCACTACCCTTTCACTGTGAAGGCCAACTGTGAGCGTCATTTGCGTAAGAAACACATGAAAAACACACGTAAAGACatagagaaaaacattaaatatgtaacCACCTCCTCCAGTGTAAGTGGTGTAATCGGAGGCACCACACTTGACCTCCTTGATACGGCCACTGCCGGTAACGCATCTTGTCGATATTGCGGAGAGGACCTTAAGAACTACAGAGCACTTCAGATTCACCTGCGAACACACAATGGATGTCAGCGGAAGCCATTTGAGTGTAAGCAATGTGGGGCGGCGTTTCTTGCTAAAAGGAACTGCATTCACCATTTGCTGAAGCACCACCCAAATGTTCCAGAGCGGGAAATTGAAGAACACATCAAAAGTCTTGTACCGGTTGGAGGAGAACCCAACCCTCCAACCTCAAATGGGCAGTTTAACAGCACCGTTCCTCAGAATGTAGGCCCCTACTCTGGAACCGTTGAGCTGGACCAAGACCAGCCTTTGGATTTCTCTAGCAAATCTCAAAAAACGATTGCTTCAAACGTTAAACTTGAAGTAACATCATCTCCTCTGATTAATGACTGCTCTATGGAGCCCATTGATCTCTCGATACCTAAGGATCCTGAGAAGAAAATGACGAAAGAACAACCTCAGAGCATGTCTCTGAATCATCAAGACATCAAGAAAGAACAGACCCTGGAAACGACCCCTGGACTTCTTGCAGCTCTCCCAGTCCCCATTTCTAGCCTTGGTTCTGCTCTATCCAGTGACCCTACTAAGCCTTTTACTCGCTTGAAGCCATTGCTACCAAAACCATCTTCTGTTTCCAGCACTGAAATGGCACCGCTGGCCTCCATTACTCAAATCATCTCATCGATGTCAGCTACTCCAGTGTGGATCGAAACAGGAATAGATGGCAAAAACAGTGCAATGGATCATAATACACTAAGTGAGAAGAAGGGGAGTACCAAACTGGATTCCATTCAAAATGGGTCTTCTGATAACTCAAAGAAAAGAGGCAAGAAGAGACCATTTCAGGAAGAGATCTGTGATCCGAGAATGCCAGCAGGTTGTGGCATCGACTTGGAGTCAAGTGGAGAGTTTCCCAGTGTGGAAAAAATGCTGGCTACCACAGactcaaataaattcagccccTACTTACAACCTAGTCAGATGGAGCCAGtgaaggaggagaaagagaagcaGTCCATCAGTGAAGAGGCAAAAGAGGGACGAGAGGATAAGCCAAAGAAACCTTCACAGAATAAAGGAAAGAAGAATGCTTATTCCAATTCAGTGCAGAAAATGACCTGCCCATACTGTCCACGTCTATTCCCTTGGGCCAGCTCATTGCAAAGGCATATGCTAACACACACAGGTCAGAAGCCATACCCTTGTCCTCAGTGTGAGTCATTCTTCTCCACCAAGTCAAACTGTGAGCGCCACCTGCTCCGCAAACATGGAATATCTAATCGGACTCTTCAAAACAGTGGATCTCGACCCAAACCTAAGGCTGACGAAGGATCCCAAGGAAGTACTGGTACTGTTGAGAGTGTATCTGACACTGAACCTCCTGCAGCCAGAGATATTTTGGATCTGAGCTCCGTCAACCCCAAACAAGAGGACAAAGCTTCATCTCCTGAACAAGCGCTAGAACAAACAGGACAATCAGCCGCTGAACAAACAGACAGTATCTCAGACCCAAACGAAACACAGCCAGCAGAGGGAAGTCCTGAGGGAGTAGAAAATGATGACGATGACTCTCAAAGCAATAATAGTCTTGATATGAACCTCGCCAACAAGCTTGTAGACTTCAAGCTTTCTGGAGCAGAGCAACACCAGCCGAAATCGGCTGAAGCGGTTTCTCCACCAGATGAGTTCCCACACACCTGTGTGTCCTGTAAGAAGACCTTTCGCCATGCAGCCACCCTCAGCAGGCACCAGAAAACTCACATTCAGGAGGTCCAGCCAGAGGATGCAGGGAAAAAGGGAAGACGCCAAGCTGCTCCTCAAAACCCAGTCACAGCGCCCAGAAAGGAACTGGGGCTGGAGGCAAAGTTAGAAGATGATGAAAAGGATGAGAACAGCAGCTGTGTGGATAGTGGTGCTgatgaggaggagaaggagagggAAGAGAtgagtgatgatgatgaagaagaggCTGCTTCCTCAGAGCTCAGGGCTTTGGAAGAGGAGGGGGGCGACCTGGCTGGAGGCAAAACCGACAAGAGAAAGAAGATCTGTGCTGTGTGCAGCAAACGCTTCTGGAGCCTGCAAGACTTGACCAGACACATGCGCTCACATACTGGAGAGCGACCTTATAAGTGCCAAACCTGTCACCGCACCTTCACTCTGAAGCACAGTCTGGTGAGGCATCAACGCGTCCACCAGAAACCCACAGATGAAAAAGGGACAGATGAGGGAGAAATGAATGAAGAAATGGATGGTGCAAGAGATAACTGTGAAATGCTGGAGGAAAAAGAGGTCAGGTGTTCATCTGCAAGTCAAAGTGAGGCAACAGCTCCAATCCAGAGTGAGAATGAATGTGAGAAAGCAGGAACACCCCAAGAAGCAGAGAGTGAAGGACATGTGGAGGAAGTTCAGCATCCTGAAGATACATCCATGGAGATGAATTCTGCTGAAGAACCTCAGCCAGATGGGGCTGAACAAGAGGACCATCAGACATTAGTCGCCTCAGCAGAGGCCCAATCAGGCTGTGATCCAGAACTTGCAAAAATCAGTGTCCATAGCTGTACAGCAGCTCAGGAAGTGGAGACGCCTGATCAGTGAAGAGAAAATTCACTGTTACTTTTGTGCCATAGTTTATCAAGCTTCCACAAACACTAGGAGCTGCAAAGCCTGGCTTCTGCCGATATTTGTCTTATACGGTATGCGTGACAGATGCATACTGCGTAACAGTTTTGGATTCTTCTCTTGATGCcttaatgcttttttctaaagATCTGGATCAGCACATAACTGGACAGTAGCAATAATCCTATTTATATGATTGTTAATGAATCATATAAAGCCTTTATATCAATAAATTAGAAGCATTTGTATGATGAACAGAAGATTTATATATCAgcattaaattgtattattcttAAGTCAGTTTCTGTATGTTTTCAGTATCTGTATGGAGTTGttcggtttcttttttttgtcttatggAACTGAAGAGCTTAAGTGCCTGACTCATTTTCATTATCAAGATTAGCTGAATACAATTTGGATAAAATTGCTGTTTAtctatgtaatttttattttgggtgatCGTCGGCCAATCAGTTTATCGGCAATATTTGCCCTTTCTTTGTATATTATTCTTCATCTTTGAGCCTCATTGACAAATGTTGCAGAAGACTTGTATAAGTGGCTGGGAAGCTTGAAACAGCGCCTTCTGGTGGCGCAGAGTGTGAAGTATTATATTGTGAGGCCTGTGCATCAGAGAGAAGTGCTTCTGAGAGTCACACAGTATGTATTTAATGTCAGTGTGACTCAGAGTTCATTTTATGTATCtttaaagtgtgatttttttttttttttttggttttgtttgccTTCTTGGTTTTGTGTTTGTACTGGAAATCTCCCTAGGATTCATTTTGACTTCTTCACTGGCGTTCACACTAAAaatcaaacactttttttctctttatccAGTAGATATCGGTTCGAAAAAGCAATCTAAAATGTATCCCTTATATTGGTTCATGTAAAAGGGATGTCAAGCTTGCCTAAAACGAAACAGAAAAACTGTACAGCACATTAGTTCTTGTAACAGAGTGAATTGAATAACCCCTGAAGCCCACACAAAACTTCACTTGAGATTCGGTGAATTTGAAGTCCTCTTAGTGGCAAAATGTTTGCTAGTTTtcatcaatttttcattttcattttgagtctTTGGATTTAAGACCAATTCAAACATTGGAAACGAACTGGCCTTTGCATTTTTGAAAcacgttttctttcttttgtttttgtgtaatgaTGTTTGTAAATGTGCGTGTGGGTGTGCACAGTCATATGGAtagaaaacactgaacattttATGCAGGTATTTATTGATAAATCTAAAGCGTGTGGTTGTAATTTTGGAAAGCCATGTAGAATCCAATTTGTGCGGCGAGGAGAATCAAAAAGacaaatgttgttttgagaTTGAGGTTTTCGACATTTTCAAATACTTTGTACATTCAGATGCTTTAGACAGTTATAtcttttgtgtgtctttttgttCGTCCGCTAATGAAAACTTCAGCCAATTCAgctattcattcatttgagaGCATTGAACCATAGAGTTTAATTTGATGGGTTTGACattgattataaaataatgattctTGCATGTTGAGCTAATTTGAATTTCTCAGTTATTTTCTTTCTCAGGGGCTTTTCAaaatctgtgtttctgtctggtGTATAAATGCAAGCTCTGTTCACTACACTACATTTTAAGAGCATTTGACTGAATTTGGTCACAGTATGTTTAGGCCTAATTGTACCAAACCTTTTCtacaaattattgtaattaattcaCATATCAGTGACCATGTTTGTCTGAATTGCAAATACTTGTCAAATCAGTTCAGATGTAGACAACTTCttgattttgctttttttgaccTTGTTTATTTTCAACCCTGTAAAGCAAATAAATCATCCAATCAATAAATGTACACTAAGAACAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K20210 RREB1; ras-responsive element-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16351 lncRNA downstream 231910 10392696 ~ 10393162 (-) False fbxl7
TU16322 lncRNA downstream 304707 10318984 ~ 10320365 (-) False ca8
TU16318 lncRNA downstream 398216 10226218 ~ 10226856 (-) True G10987
TU16144 lncRNA downstream 465008 10158578 ~ 10160064 (-) True G10869
TU16114 lncRNA downstream 529370 10095217 ~ 10095702 (-) False hfm1
TU16411 lncRNA upstream 10628 10666477 ~ 10666712 (-) True G11057
TU16424 lncRNA upstream 11793 10667642 ~ 10668053 (-) False G11064
TU16425 lncRNA upstream 11965 10667814 ~ 10668967 (-) True G11064
TU16426 lncRNA upstream 11965 10667814 ~ 10668124 (-) False G11064
TU16423 lncRNA upstream 13213 10669062 ~ 10669414 (-) True G11063
XM_043259378.1 mRNA downstream 328 10616301 ~ 10624744 (-) False riok1
XM_043259368.1 mRNA downstream 364 10616301 ~ 10624708 (-) True riok1
XM_043259387.1 mRNA downstream 374 10616301 ~ 10624698 (-) False riok1
XM_043259569.1 mRNA downstream 14337 10592212 ~ 10610735 (-) False pip4k2ab
XM_043259560.1 mRNA downstream 14341 10592212 ~ 10610731 (-) True pip4k2ab
XM_043259675.1 mRNA upstream 8439 10664288 ~ 10665070 (-) True LOC122359387
XM_043259352.1 mRNA upstream 13621 10669470 ~ 10684655 (-) False cdyl
XM_043259342.1 mRNA upstream 13621 10669470 ~ 10684655 (-) True cdyl
XM_043259254.1 mRNA upstream 55116 10710965 ~ 10726846 (-) True xirp1
XM_043259526.1 mRNA upstream 175261 10831110 ~ 10861595 (-) True LOC122359216
unassigned_transcript_206 other downstream 235449 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16347 other downstream 246861 10376063 ~ 10378211 (-) True G11011
TU16135 other downstream 481404 10142043 ~ 10143668 (-) False lmo4
XR_006253077.1 other downstream 485487 10121767 ~ 10139585 (-) False pkn2a
TU15736 other downstream 1105550 9500139 ~ 9519522 (-) False plppr5a
TU16485 other upstream 102179 10758028 ~ 10764891 (-) True G11102
TU16480 other upstream 112125 10767974 ~ 10861554 (-) False LOC122359216
TU16478 other upstream 113666 10769515 ~ 10783951 (-) False LOC122359216
TU16500 other upstream 144867 10800716 ~ 10803288 (-) True G11105
TU16716 other upstream 679882 11335731 ~ 11339597 (-) False trnau1apb

Expression Profile