RNA id: XM_043259280.1


Basic Information

Item Value
RNA id XM_043259280.1
length 3565
RNA type mRNA
GC content 0.49
exon number 17
gene id afg3l2
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10481670 ~ 10489280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGCACCGGAAGTAAATCGCAATGGAACGCAGTCAATTTCAAGTTCATGTTGTCAAAACTTTTCGTCCGATGTCttgttttttgtattgattAGAGTCAAGAGCTCCCAGTGCCATTATGGCACACCGATATCTGCATCTGTCAAGAGGCTGCAGGAACCTTCTCCACGCTCTGCTGCCGAATGTCAGATCAACAAACCGTGTGCAATCGGTTCAGGGTGTTGGGCAGATCGTCCTAGATAGAAGATCCTTGCTGTCGCAGGTCTTGGGCGCCTACAGAAGATTAAGCTCCAAACATCCCAAAGGCTTTGAAAAATATTTCCCCAATAATAAAAACGGTGGGCCAAAAAACGGTGAGCCCAAGCCATCCAACGCGGAGGTCAAAGAGGCCAAACCAAACAACGCTCAGAAGACCACTGGTGGAGGTGGAAAtaatggaggaggaggaggaggaaaaaaagggGGGAGGAAGGATGAATCCAATTGGTACAGCCGTCTCCAAAAGGGCGATATGCCGTGGGACGATAAAGAGTTCCGCATGTACTGCCTGTGTGGAGCAGCTATCTGGACAGCCATCACGTATTATTTCTTCTTCCGAGACGGAGGAAGAGAAGTCACCTGGAAAGACTTTGTAAATGGGTACCTTGCTAAAGGGGTGGTTGACAGGTTGGAGGTTATAAACAAGCGATACGTAAAAGTCGTCTTTAGCCCTGGGAAAACTCCAGTTGACGGGCAGCAGTATGTGTGGTTCAACATCGGCAGTGTGGACACATTCGAGAGGAACCTGGAGACTGCTCAGCTGGAGCTGGGTATCGAAGGAGAGAACAGACTTCCAGTCGTCTACTCCGCTGAAAGCGACGGGTCGTTCCTCCTCAGCATGTTGCCCACCGTATTGATCATTGGCTTCTTGCTGTTCATGCTGAGGAGAGGTCCAGTCGGGGGAGGGAGGCCGGGGAGGGGCATGGGTGGGCTCTTCAGCGTCAGCGAGACCACCGCCAAAGTACTACGAGACGAGATTGACGTCAAATTCAAGGATGTCGCGGGCTGCGAGGAGGCCAAGTTGGAGATCATGGAGTTTGTAAACTTTCTTAAGAACCCAAAGCAGTACCAGGATTTGGGTGCCAAGATTCCAAAGGGGGCTATTTTGACCGGTCCCCCGGGCACAGGAAAGACTTTACTAGCCAAGGCCACCGCGGGAGAGGCTAACGTCCCCTTCATCACTGTGAATGGATCAGAGTTCTTAGAGATGTTTGTGGGGGTTGGGCCAGCCAGGGTTCGGGATCTCTTTGTATTGGCCCGGAAGAACGCGCCCTGCATCCTCTTCATAGACGAGATCGATGCTGTAGGAAGAAAGAGAGGCAGGGGCAACTTCGGCGGACAGAGTGAACAAGAGAACACTCTCAACCAGTTACTAGTTGAAATGGATGGATTTAACACTGCTACCAATGTTGTAGTGCTGGCGGGCACCAACAGACCAGATATTCTAGATCCAGCTCTGATGAGGCCTGGACGCTTtgatagacagatatatatcGGGCCACCCGATATCAAAGGCAGAGCCTCTATATTCAAAGTCCATCTGAGACCACTAAAGTTGGATGCAGAGTTGGACAAAGAATCACTGGCAAGGAAAATGGCTGCTCTGACGCCTGGTTTTTCAGGTGCGGACATCGCTAATGTGTGTAACGAGGCCGCGTTAATTGCAGCCCGCCACCTTTCTGATGCCATCAACCAAAAACACTTTGAGCAAGCCATCGAACGAGTAATTGGGGGTCTTGAGAAGAAGACGCAGGTTCTGCAGCCGGAGGAGAAGAAGACCGTGGCTTACCATGAGGCTGGTCATGCCGTAGCCGGCTGGTTCCTCGAGCACGCTGACCCTCTGCTTAAAGTGTCCATCATCCCGCGTGGGAAAGGTTTGGGCTATGCCCAGTATTTGCCCAAAGAGCAGTACCTGTACACCAAGGAGCAGCTGCTAGACAGGATGTGTATGACTTTGGGTGGACGTGTGTCTGAGGAGATCTTTTTTGGCCGCATTACCACGGGGGCACAAGACGACCTGAAGAAAGTGACACAGAGTGCCTACGCACAGATTGTGCAGTTTGGCATGAATGAAAAGGTAGGGCAGGTGTCTTTCGACCTGCCTCGGCAGGGAGAGATGGTTTTGGAGAAGCCCTACAGCGAGGCCACGGCACGCCTCATCGACACGGAGGTCAGGAACCTCATCAACACGGCCTACGAGCGCACACAGCAGCTGCTGAAGGAGAAGAAGGCTGAGGTGGAGAAGGTGGCACTACGTCTACTGGAGAAAGAGGTGCTGGACAAGAACGACATGGTGGAGCTGCTGGGCCGAAGGCCGTTTGCTGAAAAGTCAACTTATGAGGAGTTTGTGGAGGGAACGGGAAGCATGGATGAGGACACGTCTCTGCCGAAGGGCCTGAAGGACTGGAACAAGGAGCGCGGCAGTGAGAAGGAGGAGAGTACGGAGGAGCAGGTGGCCCGACAGATCACAGGTGGTATGCCCTTCTGAGGACCCCCTTTTTCAACCGTGACCCCGGAGGGTCAGAGCAGTTATTTAAGAGATGGGAAACATTTGCCAGACGGACACTGAGGCAAGTACCCGGTTCTTCAGAAGAGCTGCAGCTCTTGGTAGTAAGCTTTGGACTTATGTTGTGTACGGTAGGgtgtttatgaaatataaactttCTTTTGCTGAAACGCAATAAACTTCAGCACAATGTAAAGGATCGGGAGGTCTTCTGTTGAAAGTGTAGTGTATTTTACGTGACACATCGGCGCTTTGCTAGAAAATGTTTAACTTGAGGCAAAAGCGCTGTAGCTTGTCACTTTAATTTTACCTTTCGTTGACCAAGAAGACAAATCTCTCTCTATATAGATACATTTACGTCTAACAGGAGACCTGATAGGCGCAggtttgtgtttctgtgcattAAGGCCCCGGTTCAAAACTGCCACAATTTCGCGACCTTTCTCAAAGGTCTTTTTGCAATTCTTGCTTGCTCACGGGCATTTGAAAGACTGAAATGTACACGAGCGTTGTGAACCGTGCACAGTCACTCATGTCTCTCACAGAGTTTTGCACGGGCACGAGCGTCAGCCTTCGgtttcaatgttattttatgcaatttacGATCATGTCCTTTGATTGAAGGAAAGAGCAGTAATTTTTGATGTGTTCTCTTCTGTTGGAGTTTGTCTGCTTCATTTATGGCCCAGGCAGCTGCTCTCCGTGGTACAGGCTGATCAAACTATAGCTCCTTGTGAAATTGTTGCATACGGCCTAATGCAAGCGTACACAAATGCAGATAAGTAGTTCGTTATGTTAATGATCAGCTTATGAACATGTGTGATTTCTGACAGCAGTATTTATTCTACAGTGCAAATCCAAACCACAAATCGAGCTATGAGGTTAAAAACAGAACACTGTCTAATACGCATTGTCCTTTTGTGATTTCAGCTTGATATTACatctaaatgtgtattttgttcTGTGCGAAGGGTTTTGAACATGTTTGAAAACTTAAATAAATCCACATAAATTTCAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08956 AFG3; AFG3 family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16351 lncRNA downstream 88508 10392696 ~ 10393162 (-) False fbxl7
TU16322 lncRNA downstream 161305 10318984 ~ 10320365 (-) False ca8
TU16318 lncRNA downstream 254814 10226218 ~ 10226856 (-) True G10987
TU16144 lncRNA downstream 321606 10158578 ~ 10160064 (-) True G10869
TU16114 lncRNA downstream 385968 10095217 ~ 10095702 (-) False hfm1
TU16411 lncRNA upstream 177197 10666477 ~ 10666712 (-) True G11057
TU16424 lncRNA upstream 178362 10667642 ~ 10668053 (-) False G11064
TU16425 lncRNA upstream 178534 10667814 ~ 10668967 (-) True G11064
TU16426 lncRNA upstream 178534 10667814 ~ 10668124 (-) False G11064
TU16423 lncRNA upstream 179782 10669062 ~ 10669414 (-) True G11063
XM_043259604.1 mRNA downstream 5441 10465309 ~ 10476229 (-) True inhbab
XM_043259720.1 mRNA downstream 48549 10429794 ~ 10433121 (-) True LOC122359424
XM_043259536.1 mRNA downstream 60195 10392682 ~ 10421475 (-) True fbxl7
XM_043259542.1 mRNA downstream 63533 10392682 ~ 10418137 (-) False fbxl7
XM_043255291.1 mRNA downstream 161267 10314033 ~ 10320403 (-) True ca8
XM_043259660.1 mRNA upstream 18043 10507323 ~ 10520967 (-) True ctdsplb
XM_043259665.1 mRNA upstream 18043 10507323 ~ 10520960 (-) False ctdsplb
XM_043259318.1 mRNA upstream 45856 10535136 ~ 10541375 (-) True zbtb47a
XM_043259577.1 mRNA upstream 53827 10543107 ~ 10564473 (-) True vipr1a
XM_043259639.1 mRNA upstream 81532 10570812 ~ 10573903 (-) True si:dkey-29d8.3
unassigned_transcript_206 other downstream 92047 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16347 other downstream 103459 10376063 ~ 10378211 (-) True G11011
TU16135 other downstream 338002 10142043 ~ 10143668 (-) False lmo4
XR_006253077.1 other downstream 342085 10121767 ~ 10139585 (-) False pkn2a
TU15736 other downstream 962148 9500139 ~ 9519522 (-) False plppr5a
TU16485 other upstream 268748 10758028 ~ 10764891 (-) True G11102
TU16480 other upstream 278694 10767974 ~ 10861554 (-) False LOC122359216
TU16478 other upstream 280235 10769515 ~ 10783951 (-) False LOC122359216
TU16500 other upstream 311436 10800716 ~ 10803288 (-) True G11105
TU16716 other upstream 846451 11335731 ~ 11339597 (-) False trnau1apb

Expression Profile