RNA id: XM_043259401.1


Basic Information

Item Value
RNA id XM_043259401.1
length 3236
RNA type mRNA
GC content 0.49
exon number 10
gene id tox
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10223331 ~ 11062973 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTTCTTCTCTTAATTGCGTTGCGATTTCTGAGTAAGCGAGGAACACGCTTTCTAGTGGAAAGGCAATAGGGGCCGGTTGATGTTTTACTGAAATGGACGTGAGATTTTACCCACAACCTCCTCCACCATCAGCAACAGATCCTTCCCGACTGGGACAGTCACACTATTCAGACTCTCCGTATTGCAATAAGTACGACAGTGAAAACATGTTCATGAGTATGCCAGAGCCCAGCCAGGACTTTGTGCCAGGGAACCAGTTCCGCGTACCTGCCAGTCCCAGCCAGACGCAGCACAGCAACAAACAGGCCGGCGGCCACTGGAAGAGAGACACCCCAACACACACGGACGGCCCCCGTCTGACATGGCAGTCCTACCCAGTGCCCAGTCTTGGGGACGAAGACTTCAACATCCCGCCCATCACTCCCCCGACCCTGCCCGAACACATGCTGGCACACTTGCCTGAGTCTGAGTCCGGAACGTACCATCACCTGTGCCCCCCTGTCTCCCAGAACGGACTGCACCACTTTCACCTGCAAGGAATGGACCTGCCGGGCATGTCGGTGCCTAACATGTTGGGTCAAGATGGCGGCCTGCTCACTAACTCCCTCTCAGTGATGCAACAAATGGTCAACTCAGATTCGCGTTACGGCGGCCATCCCCAGGTGGACACGCTCAGACCCAGGGTCCAACCTGGCATGGTTCCTCAAGGTCAGCTGACCACTATCAACCAATCACAACTCAATACTCAGCTGGGTCTGAACAACAACAATGGCACCCATGGATCCCCATCTCCACCAGAGAGCAAGTCCGCCACTCCCTCCCCCTCCAGCTCCGTGCATGAGGACGATGCAGATGATGCTGCcaagATCAATGGGGCAGAGAAGAGAGCAGCCACAGACATGGCCAAGAAGCCCAAAACCcccaagaagaagaagaagaaagaccCCAACGAGCCTCAGAAGCCAGTGTCGGCCTACGCCCTGTTCTTCAGAGACACGCAGGCAGCTATCAAAGGCCAAAACCCTAATGCCACATTTGGGGAGGTTTCTAAAATAGTGGCCTCCATGTGGGACGGCCTGGGCGAGGAACAGAaacagGTgtacaagaaaaaaacagaaaccgCAAAGAAGGAGTACCTCAAACAGCTGGCTGCATACAGAGCCAGCCTCGTGTCTCAGAGCTACAATGACCCAGGAGATGTGAAGGCATCACAGGCCTCTCAGATGCTCGGACCCAAGCCACCAGTTTTCTCCGGGGCAGGCCAGTCTCACCCAGGTCTCTACATGGCTCCTCCGTACCACCAGCAGCCAGGACTCAGTCCCCACCTGCCCCAGATGCAGCCAGGCCTAGCTCGAGGTGGTGCATCCCGGCCCAGCGCGCCTATGCCAGGAGCAGTGAGCATGGGCAGCATGACGGGCTCGTCCCCCCCTCCGCTGCAGATCAGCCCCCCCTTACACCAGCACCTCAGTCTCCACcagcaacaacagcagctcAGCAGCCACCCGATGCCCCTGCACTCCCCATCCATGGCCCAGGGTTTCCCTCTTCAGGCAGAGTATCAGAGCATGGTAAATGTCACATCCTCCGCCGGACCCGGCCTGTCCCCTTCGATGGACTACCGCACAGGCTGCAGGAACGGACCGACCCAGGGCCTGGACTGGACCCCCGACTACTGCGGCAACGGAGCCCTGCAGAGGGACAAAGCCCTGTACCTGACCTGATCGACAAACCCAACCTCACGCTCCTTCACGCTCACAGGACCAAGGCAGTTCCTCATCCCCGTACAGCTATTCAGGGCCTGATTGTTCAGGCCTTACTTTAGACTAGACACAATCCACGCATCAGCAAACCAAcgtttgaatgttttctttctcatgGCTCACACTTTAGTGCACCCTACCGTGGTGGCTTTGGAATTTGTATCTCCTTCTAGCTTCTGACATTCAGACATTTTGGATCTTTAAAAATAGAGTTTAAATCATCGCAAGCATGAACATGTGAATTGTATGCTAAAATTTGTTTCAATGCAATCACCTCTCTAATGATATTGACTTTTAACGCCCTCCTATTGTTCGGCGTCCTAATAAGAGGCCGTGTATGGAAACCCCCTGTAGACGTGTGTTTTATTGAAGATCGCTCATGGTTTTTGAGACGTTGCGTAGGTCAATTCGCCTCGCAGGAAGGTTGTCGATCCATCGGTGTCTAAGCACTTACCGCTGCTTGTCGGAGACTCCCAAGCTCTCGCTGACAAACGGCGGAACGAAAGCCAAAACAGAACTTCTTTTTTGTACAAAGAGGAAAATCGTAATCcgaaaacagaaaagaaacaaaaagccacaaaaaaaaaaagaaaaaagaatgcaGACGGTATGACTCCTACGTCTTGCCCCGCTCCTCTTTCTCGTCGTATCATTCTTCCTCTCTGTAATGATCTTTTCTAGTCAACTGCCTTAGAAAGAGAGTTCTGTTGTAAGTATAAAACAGTCGCTCATAGGAAGGTTATGGACGGCCGAACGGGTTGTTTTAAGCAGCCCTCGTTTCAAGCTGTAAATAGAATCTGTGTTACTCCTAGAGTATAAgaattcaactttttttctaGTAACAATGTGATTTTGAATTGGACCACACCAGTTCGCTTCAAACTCGAAAAGGGATAACTAGCCAAGAGGGGTAATTTCTTGGCAGCGGACATCGCTGTTGATTAGACCAACAAAAGAGACTAAAGAAGTATTCTTTTCCCAAGTTTAATAACGTTAAGGTTGATGGCATCAACCAGCGAGGTAGCATGAAATGATTCATTAAGGAAAGTACTaaagaaaagtttattttgtattacgCAAAATACTTCTTTTGTATCACTTCTGGCATATTGATTAATGTCATCCAAACTATGTGTATGAAACTGTCAGATGCTTATATGGTGTTAATTAGAAGAAACAGTGGCAGATTGGAGAGTTGCTGTATAACCCTGGCATATGGCTGATCATTTACTATTCCTCTACACTGTGTCTATATGAGATCTTTTTATGGTACTTGTTTGCGCCTAtttatgaaggaaaaaaaataactgtaggTGTTTTTTGAGTAATTATGTTAGAGTTCCAGGGatgtttttctgttcatttgttttgacagAATCGATCCAGGCAACAATGTGAATAattcttatttagtttttattgtgtttgaaaataaataaaggcaaacCTGCATTTTTGTGCAGTAATTCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16144 lncRNA downstream 63267 10158578 ~ 10160064 (-) True G10869
TU16114 lncRNA downstream 127629 10095217 ~ 10095702 (-) False hfm1
TU16112 lncRNA downstream 130673 10090936 ~ 10092658 (-) False hfm1
TU16111 lncRNA downstream 132880 10090101 ~ 10090451 (-) False hfm1
TU16050 lncRNA downstream 175958 10046818 ~ 10047373 (-) True G10812
TU16322 lncRNA upstream 42957 10318984 ~ 10320365 (-) False ca8
TU16351 lncRNA upstream 116669 10392696 ~ 10393162 (-) False fbxl7
TU16411 lncRNA upstream 390450 10666477 ~ 10666712 (-) True G11057
TU16424 lncRNA upstream 391615 10667642 ~ 10668053 (-) False G11064
TU16425 lncRNA upstream 391787 10667814 ~ 10668967 (-) True G11064
XM_043220440.1 mRNA downstream 65310 10146582 ~ 10158021 (-) True hs2st1a
XM_043255931.1 mRNA downstream 79622 10140937 ~ 10143709 (-) True lmo4
XM_043255923.1 mRNA downstream 80018 10140935 ~ 10143313 (-) False lmo4
XM_043263569.1 mRNA downstream 83748 10119973 ~ 10139583 (-) True pkn2a
XM_043258518.1 mRNA downstream 109746 10108131 ~ 10113585 (-) True lrrc8da
XM_043255291.1 mRNA upstream 38006 10314033 ~ 10320403 (-) True ca8
XM_043259536.1 mRNA upstream 116655 10392682 ~ 10421475 (-) True fbxl7
XM_043259542.1 mRNA upstream 116655 10392682 ~ 10418137 (-) False fbxl7
XM_043259720.1 mRNA upstream 153767 10429794 ~ 10433121 (-) True LOC122359424
XM_043259604.1 mRNA upstream 189282 10465309 ~ 10476229 (-) True inhbab
TU16135 other downstream 79663 10142043 ~ 10143668 (-) False lmo4
XR_006253077.1 other downstream 83746 10121767 ~ 10139585 (-) False pkn2a
TU15736 other downstream 703809 9500139 ~ 9519522 (-) False plppr5a
TU15605 other downstream 1035222 9187488 ~ 9188109 (-) False abca4b
XR_006253094.1 other downstream 1795428 8403327 ~ 8427903 (-) False zfyve9a
TU16347 other upstream 100036 10376063 ~ 10378211 (-) True G11011
unassigned_transcript_206 other upstream 113524 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16485 other upstream 482001 10758028 ~ 10764891 (-) True G11102
TU16480 other upstream 491947 10767974 ~ 10861554 (-) False LOC122359216
TU16478 other upstream 493488 10769515 ~ 10783951 (-) False LOC122359216

Expression Profile