RNA id: XM_043259411.1


Basic Information

Item Value
RNA id XM_043259411.1
length 3490
RNA type mRNA
GC content 0.49
exon number 10
gene id tox
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10223331 ~ 11062973 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCAAAGCGCTCGCTTCTCTCCATAGAGCAGTTACACTGAGCCACAGCTGCACCAAGAAGATACACATCTCTACTCACAGCAGTCAACACAGACTCACCAGATGCTCTTGTTCTCTCCAAACCTGAGCGCTTTTTACCGCGGTATCTCTCTATTGTAAGACGACTGAGGTAGAGGTtcatataaaagtttttgcGAAAACCGCGGAACGGATGTGAGGCGCAATAGAGAGCCTCTTTCAGTCTTCACTTTGCACCTTCTTCTCTTAATTGCGTTGCGATTTCTGAGTAAGCGAGGAACACGCTTTCTAGTGGAAAGGCAATAGGGGCCGGTTGATGTTTTTACTGAAATGGACGTGAGATTTTACCCACAACCTCCTCCACCATCAGCAACAGATCCTTCCCGACTGGGACAGTCACACTATTCGGACTCTCCGTATTGCAATAAGTACGACAGTGAAAACATGTTCATGAGTATGCCAGAGCCCAGCCAGGACTTTGTGCCAGGGAACCAGTTCCGCGTACCTGCCAGTCCCAGCCAGACGCAGCACAGCAACAAACAGGCCGGCGGCCACTGGAAGAGAGACACCCCAACACACACGGACGGCCCCCGTCTGACATGGCAGTCCTACCCAGTGCCCAGTCTTGGGGACGAAGACTTCAACATCCCGCCCATCACTCCCCCGACCCTGCCCGAACACATGCTGGCACACTTGCCTGAGTCTGAGTCCGGAACGTACCATCACCTGTGCCCCCCTGTCTCCCAGAACGGACTGCACCACTTTCACCTGCAAGGAATGGACCTGCCGGGCATGTCGGTGCCTAACATGTTGGGTCAAGATGGCGGCCTGCTCACTAACTCCCTCTCAGTGATGCAACAAATGGTCAACTCAGATTCGCGTTACGGCGGCCATCCCCAGGTGGACACGCTCAGACCCAGGGTCCAACCTGGCATGGTTCCTCAAGGTCAGCTGACCACTATCAACCAATCACAACTCAATACTCAGCTGGGTCTGAACAACAACAATGGCACCCATGGATCCCCATCTCCACCAGAGAGCAAGTCCGCCACTCCCTCCCCCTCCAGCTCCGTGCATGAGGACGATGCAGATGATGCTGCcaagATCAATGGGGCAGAGAAGAGAGCAGCCACAGACATGGCCAAGAAGCCCAAAACCcccaagaagaagaagaagaaagaccCCAACGAGCCTCAGAAGCCAGTGTCGGCCTACGCCCTGTTCTTCAGAGACACGCAGGCAGCTATCAAAGGCCAAAACCCTAATGCCACATTTGGGGAGGTTTCTAAAATAGTGGCCTCCATGTGGGACGGCCTGGGCGAGGAACAGAaacagGTgtacaagaaaaaaacagaaaccgCAAAGAAGGAGTACCTCAAACAGCTGGCTGCATACAGAGCCAGCCTCGTGTCTCAGAGCTACAATGACCCAGGAGATGTGAAGGCATCACAGGCCTCTCAGATGCTCGGACCCAAGCCACCAGTTTTCTCCGGGGCAGGCCAGTCTCACCCAGGTCTCTACATGGCTCCTCCGTACCACCAGCAGCCAGGACTCAGTCCCCACCTGCCCCAGATGCAGCCAGGCCTAGCTCGAGGTGGTGCATCCCGGCCCAGCGCGCCTATGCCAGGAGCAGTGAGCATGGGCAGCATGACGGGCTCGTCCCCCCCTCCGCTGCAGATCAGCCCCCCCTTACACCAGCACCTCAGTCTCCACcagcaacaacagcagctcAGCAGCCACCCGATGCCCCTGCACTCCCCATCCATGGCCCAGGGTTTCCCTCTTCAGGCAGAGTATCAGAGCATGGTAAATGTCACATCCTCCGCCGGACCCGGCCTGTCCCCTTCGATGGACTACCGCACAGGCTGCAGGAACGGACCGACCCAGGGCCTGGACTGGACCCCCGACTACTGCGGCAACGGAGCCCTGCAGAGGGACAAAGCCCTGTACCTGACCTGATCGACAAACCCAACCTCACGCTCCTTCACGCTCACAGGACCAAGGCAGTTCCTCATCCCCGTACAGCTATTCAGGGCCTGATTGTTCAGGCCTTACTTTAGACTAGACACAATCCACGCATCAGCAAACCAAcgtttgaatgttttctttctcatgGCTCACACTTTAGTGCACCCTACCGTGGTGGCTTTGGAATTTGTATCTCCTTCTAGCTTCTGACATTCAGACATTTTGGATCTTTAAAAATAGAGTTTAAATCATCGCAAGCATGAACATGTGAATTGTATGCTAAAATTTGTTTCAATGCAATCACCTCTCTAATGATATTGACTTTTAACGCCCTCCTATTGTTCGGCGTCCTAATAAGAGGCCGTGTATGGAAACCCCCTGTAGACGTGTGTTTTATTGAAGATCGCTCATGGTTTTTGAGACGTTGCGTAGGTCAATTCGCCTCGCAGGAAGGTTGTCGATCCATCGGTGTCTAAGCACTTACCGCTGCTTGTCGGAGACTCCCAAGCTCTCGCTGACAAACGGCGGAACGAAAGCCAAAACAGAACTTCTTTTTTGTACAAAGAGGAAAATCGTAATCcgaaaacagaaaagaaacaaaaagccacaaaaaaaaaaagaaaaaagaatgcaGACGGTATGACTCCTACGTCTTGCCCCGCTCCTCTTTCTCGTCGTATCATTCTTCCTCTCTGTAATGATCTTTTCTAGTCAACTGCCTTAGAAAGAGAGTTCTGTTGTAAGTATAAAACAGTCGCTCATAGGAAGGTTATGGACGGCCGAACGGGTTGTTTTAAGCAGCCCTCGTTTCAAGCTGTAAATAGAATCTGTGTTACTCCTAGAGTATAAgaattcaactttttttctaGTAACAATGTGATTTTGAATTGGACCACACCAGTTCGCTTCAAACTCGAAAAGGGATAACTAGCCAAGAGGGGTAATTTCTTGGCAGCGGACATCGCTGTTGATTAGACCAACAAAAGAGACTAAAGAAGTATTCTTTTCCCAAGTTTAATAACGTTAAGGTTGATGGCATCAACCAGCGAGGTAGCATGAAATGATTCATTAAGGAAAGTACTaaagaaaagtttattttgtattacgCAAAATACTTCTTTTGTATCACTTCTGGCATATTGATTAATGTCATCCAAACTATGTGTATGAAACTGTCAGATGCTTATATGGTGTTAATTAGAAGAAACAGTGGCAGATTGGAGAGTTGCTGTATAACCCTGGCATATGGCTGATCATTTACTATTCCTCTACACTGTGTCTATATGAGATCTTTTTATGGTACTTGTTTGCGCCTAtttatgaaggaaaaaaaataactgtaggTGTTTTTTGAGTAATTATGTTAGAGTTCCAGGGatgtttttctgttcatttgttttgacagAATCGATCCAGGCAACAATGTGAATAattcttatttagtttttattgtgtttgaaaataaataaaggcaaacCTGCATTTTTGTGCAGTAATTCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16144 lncRNA downstream 63267 10158578 ~ 10160064 (-) True G10869
TU16114 lncRNA downstream 127629 10095217 ~ 10095702 (-) False hfm1
TU16112 lncRNA downstream 130673 10090936 ~ 10092658 (-) False hfm1
TU16111 lncRNA downstream 132880 10090101 ~ 10090451 (-) False hfm1
TU16050 lncRNA downstream 175958 10046818 ~ 10047373 (-) True G10812
XR_006252710.1 lncRNA upstream 38549 11101522 ~ 11104592 (-) True LOC122359508
TU16650 lncRNA upstream 38568 11101541 ~ 11104592 (-) False LOC122359508
XR_006252712.1 lncRNA upstream 54024 11116997 ~ 11120787 (-) True LOC122359521
TU16666 lncRNA upstream 84275 11147248 ~ 11150504 (-) True G11234
TU16669 lncRNA upstream 102994 11165967 ~ 11167399 (-) True G11237
XM_043220440.1 mRNA downstream 65310 10146582 ~ 10158021 (-) True hs2st1a
XM_043255931.1 mRNA downstream 79622 10140937 ~ 10143709 (-) True lmo4
XM_043255923.1 mRNA downstream 80018 10140935 ~ 10143313 (-) False lmo4
XM_043263569.1 mRNA downstream 83748 10119973 ~ 10139583 (-) True pkn2a
XM_043258518.1 mRNA downstream 109746 10108131 ~ 10113585 (-) True lrrc8da
XM_043259645.1 mRNA upstream 92289 11155262 ~ 11159313 (-) True LOC122359349
XM_043261904.1 mRNA upstream 143471 11206444 ~ 11227249 (-) False slc12a7a
XM_043261896.1 mRNA upstream 143471 11206444 ~ 11227248 (-) True slc12a7a
XM_043261925.1 mRNA upstream 143471 11206444 ~ 11227247 (-) False slc12a7a
XM_043261914.1 mRNA upstream 143471 11206444 ~ 11227246 (-) False slc12a7a
TU16135 other downstream 79663 10142043 ~ 10143668 (-) False lmo4
XR_006253077.1 other downstream 83746 10121767 ~ 10139585 (-) False pkn2a
TU15736 other downstream 703809 9500139 ~ 9519522 (-) False plppr5a
TU15605 other downstream 1035222 9187488 ~ 9188109 (-) False abca4b
XR_006253094.1 other downstream 1795428 8403327 ~ 8427903 (-) False zfyve9a
TU16716 other upstream 272758 11335731 ~ 11339597 (-) False trnau1apb
XR_006253162.1 other upstream 319133 11382106 ~ 11405700 (-) False kcnn1a
XR_006253161.1 other upstream 319133 11382106 ~ 11405697 (-) False kcnn1a
TU16731 other upstream 379445 11442418 ~ 11445113 (-) False cnn2
TU16759 other upstream 385785 11448758 ~ 11449423 (-) False crsp7

Expression Profile