RNA id: XM_043259452.1


Basic Information

Item Value
RNA id XM_043259452.1
length 2478
RNA type mRNA
GC content 0.46
exon number 5
gene id csrnp1a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10733916 ~ 10741971 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAGGCGGTGTGGGGGGAGTTTTCCACTGACGAACAGAACTCGCACAACTCAACAACAGCTGATCCCTCTGTACTGTACGTGCGCCGAGGGCTCAGAAAGAGGACGTTGGCGCTATCTTGATAACTTTTCGAGCATCGTATGGTCGTCTCTTCCACCCATGATACACGGATACACAACCGCTGGATTGCCATGTCTACATCACAACGTGGGGCTTTAAAGAGGAAATATGGTTTCCCTGACGAGGATGCCATTTACTCCTCTTCATCCCCCTCATCACACTCTGAACTGGACTCTGATGAAGACAGCCCCCAAAGTGATAGCATGGACTTTGTGCCTGTAGGCTCCTCCTCTTCAAGTCATCATATGTCAAGTAAGCCATTTGCATCCATCCTGAAGAAGACGAAAGATACTCAATCCAAAGGCAGTGTTCGGTTCGGCCTGGTCACAGTGTTCCTTTTCCAGCGCTGCCAAGGTTTCAGCAGTGTGCCCAGTCATGGTGGCTGTACACTGGGCATGGTTAGACGGCACACTACCCGCCAGCAGTTCACCCTGGCGGAGCACTCGGACGAGCAGCAGCGCTTGCGAACGGAGAGGATACGTGAGCAACACCAAGAGGAGAAGCTGGAGGCGTTGAGACAGAAGcttatCATCAGTGGGACTCTCACAGCGTCAGAAGCGGCCAGGCTGACGGTGAACGACGTCCCAGATGAGGATAACGATCTATGTAGCACAAAGCTGAAAGACATGGGATCCCTCCGTCCCTGCTCTTCTAAGCGGAGACGTGCGTTATTGAGAGCAGCGGGAGTGCAGCGCATCGACCGGGAGGAGAAGAGGCAGCTGCAGGAGCTGAGGCGGTGGAGGGAAGACTGTGGGTGCCACTGCCAGGGCTTCTGTGAGCCCGAGACCTGTTCCTGCAGCCAGGCTGGCATCAAGTGCCAAATGGATCGCGCCAACTTTCCCTGTGGATGCTCAAAGGAATGCTGTGGGAATCCCGCAGGCCGAATCGAGTTCAACTCCAGTCGTGTGCGGAGCCACTACATCCACACGCACATGAAGCTGGAGCTGGAAAAGAGACTGCACGATAACAACAGACTGATCTCCTCTGAACAACAGTCAGCTACGAGGAACAGAGCCGCTACATTTCCTGTAGAAAACGACTCTCCCTCATTCCTCCTGAGCTCAGAGCTCTGCAGGCGGGGAGACAGCAGCTGGAGCAGCGACATGACTGACACCTCCTGCTCTTCTTCTCTGAGTCTGGACTCTGAGACGGATGGAAGGCCTTCCTCAGAGCAGCTCACGCTGGACGTGGACGGCAGAGGACTCGTACTCAGTTTTTCCGATTCTGATGGAGAGGGGTGTCCATACATTAAAGATTATAATCTGCCCACTCAAGCCACTGGCTGCACACCCACAAAGGAAAGCAACACCAGTAAATCTAAATTGGAGTATCTGGATGAAAATGCTAATCAGGCAAGCATGGAATGTGTCCACGATCCATTTGATATCCCTAATACTCCGTCTGCATCTCCGGATCACACTATGAACTGTTACATGGACCTCAGTCTGTCCTCAGACTCTGACCTGGTCTTTTTTGACACCTTCCACGAATACGGTCCAAGCCGcagtcattttaaagtgtatagTCATCTGGACTACATGTCACAGCTCCACTTCCCTCGCTGTCCCAGTCCTGCACTAATTGAGGACTCGGGGGTCAGTCTTCTGGAGTCTCTTGTAGGAATTTCTTAAGTGCAGCTcagtattttttactgttttttttttttttttttttttttaatagccgAATGAGCACTGTTCATTTGCAATTGTACAGTATGAATAAATCTCATTTACCATGAGAAAAATGGTGAATAATATTGGAATTTAAGGATATTCCTTAGAATTATATTTAAGGATATTAATATCATCTATTCAGGATCAGtgtaaatacagttaaaaaccACTCAGTGTGAAGTAGTGTGTGAGTGATATGTCAATTTCAGCTTTGTTGCCAAAAGTTTTGGAGAGTTTGTAGctaagattttatatttattcttcaTAAACTAAAGGCTTCATTTCCATTGAATAAGGAATCGAACTAATGTTTACTTATAAGAGAAAGcccattcatatttatttctcagttttgtttttgtttaaacgATCAAGTGTGcgaataaaagttttattttttgtgtagcacagtaaatgtatttgttacagTGTTTGAAAAGAGTAAGctgttaaaaatgtcattatgcCATTTTCGTCTTTTCAAGGGCCAGGATGTCTTTTCATtaaagaggatttttttttaggaatgatttgtaatatatacacattcaggCTACATTTGCTTCAGTGCTATATCTGCTTTGTATTTACTTCGGTGAATGtttttggacattttaaaatgtgtccggcttttttcttcttctgtggaaTTACTCATCTCAATAAAACTGATTTCACAAAA

Function

GO:

id name namespace
GO:0021536 diencephalon development biological_process
GO:0030901 midbrain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16293 lncRNA upstream 68806 10663333 ~ 10665110 (+) True lyrm4
TU16295 lncRNA upstream 69803 10663333 ~ 10664113 (+) False lyrm4
XR_006252713.1 lncRNA upstream 164908 10567881 ~ 10569008 (+) True LOC122359526
TU16195 lncRNA upstream 193926 10507334 ~ 10539990 (+) False G10901
TU16191 lncRNA upstream 212206 10507334 ~ 10521710 (+) False G10901
TU16444 lncRNA downstream 16085 10758056 ~ 10831642 (+) True G11077
XR_006252711.1 lncRNA downstream 78140 10820111 ~ 10822197 (+) True LOC122359515
TU16501 lncRNA downstream 154712 10896683 ~ 10897497 (+) True G11106
TU16516 lncRNA downstream 211079 10953050 ~ 10978280 (+) True G11117
TU16523 lncRNA downstream 377916 11119887 ~ 11123114 (+) False LOC122359491
XM_043259432.1 mRNA upstream 26973 10703246 ~ 10706943 (+) True slc22a13a
XM_043259441.1 mRNA upstream 27697 10703246 ~ 10706219 (+) False slc22a13a
XM_043259491.1 mRNA upstream 31131 10692510 ~ 10702785 (+) True oxsr1a
XM_043259616.1 mRNA upstream 62104 10665905 ~ 10671812 (+) True rpp40
XM_043259781.1 mRNA upstream 69802 10662729 ~ 10664114 (+) False lyrm4
XM_043259549.1 mRNA downstream 514 10742485 ~ 10748341 (+) True gorasp1a
XM_043259730.1 mRNA downstream 6849 10748820 ~ 10752810 (+) True si:dkey-24c2.9
XM_043259653.1 mRNA downstream 166312 10908283 ~ 10917738 (+) True LOC122359360
XM_043259814.1 mRNA downstream 377883 11119854 ~ 11135991 (+) True LOC122359491
XM_043262654.1 mRNA downstream 395130 11137101 ~ 11138828 (+) True LOC122361723
TU16308 other upstream 15722 10711130 ~ 10718194 (+) True G10979
XR_006247735.1 other upstream 817055 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 818425 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 982704 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1562001 9162611 ~ 9171915 (+) False olfm3b
TU16555 other downstream 498155 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 597892 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 754389 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 754389 11496360 ~ 11498937 (+) False mast3a
TU16617 other downstream 760431 11502402 ~ 11505730 (+) False mast3a

Expression Profile