RNA id: XM_043259588.1


Basic Information

Item Value
RNA id XM_043259588.1
length 1854
RNA type mRNA
GC content 0.51
exon number 2
gene id c2h7orf25
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10422736 ~ 10425446 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAACTCTTCATGCCAGCGCTACTTTCTTCTACTTCGGGGATGAAAAGAGTCAGCCCACAACAGGAGAGGCAGAACTTGAACCTGTATGTGCTaaatatgttcaagagcaatGGCTACTTACAACACGCTGCAGGACCGAATCAGAGTAGCCAAGGAGCTGCTTGAGCGAGTGGACAAGATCTGCAGTCGCCAGGGCCGTGAGGTTGAGGGTCGTGCTAAACTGTGCAGCAAGCTCCGGGCCGAGCTCAAGTTCCTGCAGAAGGTGGAGGCGGGCAAAGTTGTGATCAAGGAGTCCCACCTGCAGAGTACCAATCTCACTCACCTGAGGGCCATCGTCGAATCGGCCGAGAATTTAGAGAAAGTGGTGAGCGTCCTGCATGTGTTCGCCTACGAGGGCCCAGACGGCCAGAAACAAACGTTGGTGGTCGACGTGGTAGCGAACGGGGGACACACTTGGGTGAAAGCCATCGGGCGCAAAGCAGAGGCGCTGCACAACATCTGGCAAGGCCGGGGCCAGTACGGGGATAAAAGCGTGATACGACAAGCGGAAGACTTCCTTGAGGCCAGTCGGCAGCAGCCTGTGCAGTACAGCAACCCTCACATCATATTCGCCTTCTACAATGGGGTCTCGAGCCCTATGGCTGACAAGCTCAAAGAGATGGGCATCTCCGTGAGAGGTGACATTGTAGCTGTTAATACCGTGATCGAaggggaggaagaggaagaagatggTGAAGACAAGCATGGCTGTGTGGAAGAGGACCAGGAGGGAGAGAATGAAGCGTTggctgaggaggaggaagaggatgatgattatgatgaaGACGACGCTGACGATACAGACCTCACGCACACCCGCGTTGATCGAGACACCGTCGTGGCCAGCCTCGCCTTCCCCACTGAAGTGAAGGTGGATGTCTGCAACAGGGTGAACCTTGACATCACCACTTTGATCACGTATGTGTCCTCCCTCAGCCACGGCAACTGTCACTTCACTTTTAAGGAAGTGGTGCTGACGGAGCAGGCTGCGCAGGAGCGCCAAGACAAGGTCCTGCCCCGGCTGGACGAGTTCATGAAGGGTAAAGAGCTGTTTGCTTGCCACTCTGCGGTGGAGGACTTCCGTGTGATCCTGGATACGTTAGGAGGCCCGGGAGAAAAATCCCGAGCGGAGGAGCTGCTAGCCAGGCTCAAAGTGGTTCCGGATCAGCCGTCTGAGCGCACGCAACGCTTGGTCACGAGCTCAAAGGTGAACCGTAGATCGCTGATGATCTTTGGGACGGGGGACACCCTGAGGGCCATCACCATGACTGCGAATAGCGGATTCGTCCGTGCTGCTGCTAACCAGAGCGTGCGTTACAGCGTTTTCATCCACCAACCCCGCGCTCTCACTGAGGGGAAAGAATGGAGAGCCACTCCGATATGACTGATAGGTGTCAGGAGACATCGACAGAGATGTACTGTATGAGGATGCTTAGAGCTATATATGATGCTTAAAACCAGACACTTGTAAGAGGCACTATTGTATCGTCGCAAATAAATTGCACGGCTGGTTGGATACAGACACTCAGCAAACTTTATGTAAACTCAGTGAGCTCAGTGCCTCAGATGCAGCATTTCAATGCAAAGCCAGCAGAGATGTCAAATTAACCAAATCAAAAATACGGtttcaaaaaagtgtttaaacagAGGCATATACTTTTGATGTCAAATCTCTCTACTACATGCCTCagggttattttagttttcaattTCCGTTTCTTTTCACAAACCTGATTTTTCTTAGTTAATCGTGTTACGTGCATTTTCACCAGAGTACCAAATAAACACTCTTCAAATGGCTTTACCTCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16204 lncRNA upstream 29586 10392693 ~ 10393150 (+) True G10903
TU16203 lncRNA upstream 30780 10391669 ~ 10391956 (+) True G10902
TU16166 lncRNA upstream 212885 10209563 ~ 10209851 (+) True G10883
TU16057 lncRNA upstream 260927 10158553 ~ 10161809 (+) True selenof
TU16087 lncRNA upstream 280765 10141342 ~ 10141971 (+) True G10838
TU16218 lncRNA downstream 19735 10445181 ~ 10482952 (+) True G10914
TU16224 lncRNA downstream 44675 10470121 ~ 10475283 (+) True G10918
TU16201 lncRNA downstream 64144 10489590 ~ 10509519 (+) False G10901
TU16191 lncRNA downstream 81888 10507334 ~ 10521710 (+) False G10901
TU16195 lncRNA downstream 81888 10507334 ~ 10539990 (+) False G10901
XM_043259223.1 mRNA upstream 44514 10337523 ~ 10378222 (+) True chd7
XM_043259240.1 mRNA upstream 44514 10337523 ~ 10378222 (+) False chd7
XM_043259233.1 mRNA upstream 44514 10338393 ~ 10378222 (+) False chd7
XM_043259687.1 mRNA upstream 86055 10325058 ~ 10336681 (+) True rab2a
XM_043253491.1 mRNA upstream 206869 10212891 ~ 10215867 (+) True LOC122355329
XM_043259710.1 mRNA downstream 473 10425919 ~ 10446802 (+) True ralab
XM_043259697.1 mRNA downstream 582 10426028 ~ 10431073 (+) False ralab
XM_043259704.1 mRNA downstream 583 10426029 ~ 10431073 (+) False ralab
XM_043259306.1 mRNA downstream 68655 10494101 ~ 10506040 (+) True plcd1b
XM_043259298.1 mRNA downstream 70979 10496425 ~ 10506040 (+) False plcd1b
XR_006247735.1 other upstream 505875 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 507245 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 671524 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1250821 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2314959 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 285684 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 814680 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 914417 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1070914 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1070914 11496360 ~ 11498937 (+) False mast3a

Expression Profile