RNA id: XM_043259665.1


Basic Information

Item Value
RNA id XM_043259665.1
length 3533
RNA type mRNA
GC content 0.46
exon number 7
gene id ctdsplb
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10507323 ~ 10520967 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTCGtgtatttcattttgacttATGATTAAACACCACGGCTCCGCAGTCCAAGTTCTTAAGGCGTTGATGAAGAAATCCGTCAACTTTGTACGGACCGCTGTCATTGGGTGACTGCGTGCTCCCCGGccgtgcttttatttttaatatgaggGAGGGGGTTCCCAGAAAATACCTCCTCCTGCTGTTCCTCGGCTCTATCTCGTGAATATCAAACACTCGCCGTCTCCATATTGGAAGCAGAGATCAGAAAACACAGGAAAACATGAAGAGGCAGTTTTTGACGATCGCTTAAGCGCGCGGACGTCGGCGTTCTCCGCTATAGCTCCGGGAGTTTAAACGCAAGCGTTCAGACGTCGCGCGGGTCATTTATTCAGCCCGCGTTTGGAGGTTTCATGGTCAGCGCGCTAACGCTATCTTACATTAGCAACCCAGCCTCCAACTACTTGTTAGCCGTTCGGCGCTGGCGCGACTGGTTTTTGTTATGCGCGTCCACACGGGCTGATTGATCAAATGTGTGTCCGCGACGCGTATTTTAATGCAACAAAACGCAAAGATTAGTGGTCGGGTGCAGTCCGTTCGCCCACGCTAGCCTGAGCGACAGCAGTCTGCTGCTGGCTGGAGGTCTGCCATTAACTCGACTAGCTGTTAGCACAAGCTGAGACACGGACGCGGCCAGAACTCGCTGGAAAAAAAAGGAGCTAACATCTCGTTTCCATGGACAACACGTCCATAATAACGCAGGTTACGAACCCCAAGGAGGAGGAGATACTCTCGTCAAATGCTGAGAAAGTGTCGCTGTCTAACAGCAGCCTGAAGAAGAAGAGGACTCGCAGCATCTTCAGCTCATTGTTCTGCTGTCTGAGAAGTTACGATGCCGAGCCCCCCGCCGCCcccaacaacaacagcagcccTCTGCCTCCACCTGTGGAGGAGAACGGAGCTCCACCAAAGCCTCCAGAGAAGTACCTCCTCCCTGAGGTTAACATAAATGACTATGGGAAGAAGTGTGTGGTGATAGACTTGGATGAGACTCTGGTGCACAGCTCGTTTAAGCCCATTAGCAACGCTGATTTCATCGTCCCAGTGGAGATTGACGGCACAGTGCATCAGGTGTATGTTCTCAAAAGACCTCACGTTGACGAGTTCCTGCAGAAAATGGGCGAGCTGTTTGAATGTGTGCTTTTCACAGCCAGTCTAGCCAAGTACGCTGACCCCGTGGCTGACCTGCTGGACCAGTGGGGTGTGTTTCGGGCGAGACTCTTCCGGGAATCCTGCGTTTTCCACAGAGGGAACTATGTCAAAGACCTTAGTCGGCTCGGGAGAGAGCTCAGGAACGTCATCATTGTGGACAACTCCCCTGCTTCCTACATTTTCCATCCTGAAAACGCTGTTCCCGTGCAGTCGTGGTTTGATGACATGAATGACACGGAGCTCCTGGACCTGCTGCCTTTCTTCGAGGGACTGAGCAAAGAGGAGGACGTGTACGGGGTGCTGCAGAACCTGAGGGGCAGGTAGCAGGctgctctctctcctctctcctctctcctccagccTGCGGTCCTCACCTCACCCACACCACCAGGACATCAACAGACTCTGAACATTAACAGACACTCGAATACTTCTCTTTTGAAAAAGTGCTTATGATAAACCAAAAAATCAACTATACTactttttctttccctttttttgaaACGATATCCAAGTCCATAACCATTCTCtgaggtgttgctatgcaggtAGAAATCCGTAGGGTTTAAAGGACTGTGGGGTTTCCTCTCCGACCCAACAAAGTGCCTTTTTTGAATGTCATTTTTACGGgggaaattaacattttgtacaCGACATATTTCCAGAGAACCTAATCTTTACAAGaattatatgctttaaaacggaGGCAGGTCAGACTCTTTTTATAAAAGCACTGTTAAAAGAGGCCAgagatttttaattatgtaaagcTGGGTACACGTCTCCATCTTCTGTTCTTCTCGTGCTCCTTTCGTTTTCGATTTTGCTTTAGCTCGTGCCATTATATAGACCGAAACTATTATCTAGACTTGTATATGTTTAGTTCGTTTTCTAAGAGCAAAGGAATGCATTTGCACTTGTTAGGTTACTCGTCTCATATACCACAGCCTCTTTTTGCCAACTAACCCCTTGAATCGTGCCAATCGCTAATATTTGTCTCGCAATCCGATGCTGAAATACGTTTCGTTTTCGGCAAACAGGCCCCCCGACGCTAATATTGGTGCTGGAGACAAATGTTTGGACATCTCAAAAACAGAacgttttagctttttttttttttggaactttGTTGATCCGAATGCCTTTGGTGAAGTAGCGTAGACACTGCAGTTGTTCCCCCGCTAGTCGTTTTTAAAGGGGAAATGTCCTTTTACGTAAACCAGGATGCACAATTGCAAATGTATCCCTTTTATCgtttttaattcttttgttTGAGTCGCGAGTTCTTGAGAATTGGTACAGGTCCatcatcttatatatatatatatatatatatatatatatttttttttttttggattagtTTCGACTCGTTTTAAACCATACCCTGCTGCTGCTATCACTGTATACTACACTACAAAAGACCTCCCTGTAGGGTACCACCAGTACCAGCCCAGGGACTAGAGCTCTGCGCAGCTTGTAGGCTTTGCTTTTGCCCTCTCGCAGAGCTAAACTTTTTCTCCTAGTGAGGGTTCGAAAGCGTTCGGCGCAAGCTGTGCAGACTCTCCATCACCGCAGTGCCTAAGACGAGAGGAGCGGCGGCGGGACGTCCCGATCGCTGCTGAACAGGCAATaacctctctttctttctctctgcccAGAGTCCGTCACGTCACGGTTCGGTGTCTACACGTTGTCcacgttttagtttttttcccctcagtctTTCATCGTCTacctctctctatctctctctgttcaTCCTGTTCTGCGGCAGGCGATGGAGGGCGATTCATTCTCACGTTTTTGGTCTTCTGTCAGTATTCGAGATGTATGCTTATGTTAGCCCACACTTGCTGTTTTCTGCTCGTTGATGCGCTGTACAGCCTCTCTTCAGTCGTCGCCGTCGATTTGGCTTGCTAGCGTTTTTGTTTCTAATGGTCAAACAATGCATAACACGTTgcaaatttcactttttttttgacaccGCGTCCTGGTGATCTGGCAGCGTTTAAACACTATCGGTTTTGCTCACAGGTGATGCTTCTGTTTTTCACACAACTAAACAGTCAGGTGCTGCTTTTTAACACACTATGTTTTTGTGACGTCACTTAAAATATCTGGCACGTTCAATTAAATTATGCCTTATTTTCTTTAGCGATAATTTTCTTTCAGTAAGCCATACAGACACTTTAAAAGGTCCACAGATTGAAATCAGTTTGGAGAGGCTGTGCAGTGCTGATGTTTGGAGTATATTTCAAGCTGAATTGATTCATGGTTGTCGCAAGTTTTCTTCCGGACTCTGACATGTTATATTAAAgcacctttttaaaaaacaa

Function

GO:

id name namespace
GO:0016791 phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16351 lncRNA downstream 114161 10392696 ~ 10393162 (-) False fbxl7
TU16322 lncRNA downstream 186958 10318984 ~ 10320365 (-) False ca8
TU16318 lncRNA downstream 280467 10226218 ~ 10226856 (-) True G10987
TU16144 lncRNA downstream 347259 10158578 ~ 10160064 (-) True G10869
TU16114 lncRNA downstream 411621 10095217 ~ 10095702 (-) False hfm1
TU16411 lncRNA upstream 145517 10666477 ~ 10666712 (-) True G11057
TU16424 lncRNA upstream 146682 10667642 ~ 10668053 (-) False G11064
TU16425 lncRNA upstream 146854 10667814 ~ 10668967 (-) True G11064
TU16426 lncRNA upstream 146854 10667814 ~ 10668124 (-) False G11064
TU16423 lncRNA upstream 148102 10669062 ~ 10669414 (-) True G11063
XM_043259280.1 mRNA downstream 18043 10481670 ~ 10489280 (-) True afg3l2
XM_043259288.1 mRNA downstream 18044 10481670 ~ 10489279 (-) False afg3l2
XM_043259604.1 mRNA downstream 31094 10465309 ~ 10476229 (-) True inhbab
XM_043259720.1 mRNA downstream 74202 10429794 ~ 10433121 (-) True LOC122359424
XM_043259536.1 mRNA downstream 85848 10392682 ~ 10421475 (-) True fbxl7
XM_043259318.1 mRNA upstream 14176 10535136 ~ 10541375 (-) True zbtb47a
XM_043259577.1 mRNA upstream 22147 10543107 ~ 10564473 (-) True vipr1a
XM_043259639.1 mRNA upstream 49852 10570812 ~ 10573903 (-) True si:dkey-29d8.3
XM_043259477.1 mRNA upstream 54292 10575252 ~ 10580622 (-) True dnajc1
XM_043259569.1 mRNA upstream 71252 10592212 ~ 10610735 (-) False pip4k2ab
unassigned_transcript_206 other downstream 117700 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16347 other downstream 129112 10376063 ~ 10378211 (-) True G11011
TU16135 other downstream 363655 10142043 ~ 10143668 (-) False lmo4
XR_006253077.1 other downstream 367738 10121767 ~ 10139585 (-) False pkn2a
TU15736 other downstream 987801 9500139 ~ 9519522 (-) False plppr5a
TU16485 other upstream 237068 10758028 ~ 10764891 (-) True G11102
TU16480 other upstream 247014 10767974 ~ 10861554 (-) False LOC122359216
TU16478 other upstream 248555 10769515 ~ 10783951 (-) False LOC122359216
TU16500 other upstream 279756 10800716 ~ 10803288 (-) True G11105
TU16716 other upstream 814771 11335731 ~ 11339597 (-) False trnau1apb

Expression Profile