RNA id: XM_043259791.1


Basic Information

Item Value
RNA id XM_043259791.1
length 4858
RNA type mRNA
GC content 0.52
exon number 49
gene id col15a1b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10864071 ~ 10889273 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGGGGGTACAGAGAGGAGACGTGCGGGAGGAGCGACATAGCGTGCTCTGGCCGTATTGCAACTGTGGACCACGTACACTTATCTACCTCGCTCAGCCAAGCAGCATGGCGGCCCCGGTGCTGCCGCTGACCTGTCTGGTGCTCCTGAGCCTGGTCAGTCTCTCCTCCCAGATCCAGTGGTTCAGGTTTCTGTGGGTCCCAGAGACGACCTCACCAGCTCCTTCTGCCACTACACCTGCACCCACCACTGCAGCACCGGAGGAGAGCACAGCCCCTGTCTTCCCAGCCTCCCCTCCTCTGCCCACAGAGGGATCGAGCGAAGCCAGAGCTAAGAAACCTCTCAGAATGTGGAAGAGTGAGCGAGGGTCCAAGGGTCACCTAGTCCTGACTGATCTAGTTGGTGTTCCTCTTCCTCCATCTGTGTCCTTCATCACTGGCTACGAGGTCCCTGCTTACAGTTTTGGGCCTAACGCTAATGTAGGTCGACTGACCCAATCCTTTGTTCCTGAGCCCTTCTTCATGGATTTTGCCATTATTGTCACCGTCAAGCCCTCCAACTCTCGAGGAGGGGTCCTGTTCGCCATCACAGATCCTTCTCAGAGGATCGTCCACCTGGGCTTGGCCCTGACACCCTTGGAGGATAAGACCCAGAGGATTGTACTGTATTACAGTGAGCCAGAGCTCGCAGAGACCATGGAGGTGGCTTCCTTTAAAGTGCCTGATATGACACAGCAGTGGAACCGCTTCACGCTGACGGTCGAGCACGAGGAGGTTCGGCTCTACATGGATTGCGAGGAGTACCACAGCGCCCCCCTGAAGAGAAGCCAGCAGCCCCTTAGCTTTAAGCAAGGCTCAGGTATCTTCGTGGCAAATACGGGCAGTACTGGCCTGGACAAATTTGTGGGGTCTATTCAACAGCTGGTAATAAAACCGGACCCTAGGGCGGCGGAAGAGCAGTGTGAGGAGGATGACCCCAGCTTGCAGGCCTCCGGGGACAGAAGTGGTGATGGTGAttatgatgatgaagaagaacaTGGGAGACATGAAGTGATGTTCGGTCAGACAAATGCACGTAGACCGACCTATCCTGTCCAAGCTCCGCCCACTGTGCTACCAGACATGGACGAAGGAGAGTTTTCAGGACATGTGACCCCTATAGATGAGAGGCTGCTTAGAGGGACCTATAAAACAGATGAAACCGGGCAGAGTACAGGGGATGGTTCTGGCCAGGGCAAAAAGGGGGAGCGTGGAGAACCTGGATCTGCAGGCCGGGACCCCGGACCTCCAGGACCTTCTCTCCCACCCACACATTCAAGTCAGCCTGGACAGAGAGGCCCTCAAGGCCCAATGGGTCCACCAGGAAGACAAGGCAGACCAGGAAAAGATGGACAAGCTGGACGCAAAGGTGAAGAAGGAAAAACAGGGCAGAGAGGACCTCCAGGACTTCCAGGATTACCTGGAGAATCTGGAGTCAAAGGAGAAAAGGGTGATACTGGGGTTGGTCTGCCTGGTCCACCAGGACTTCCCGGACCACCAGGGTCATCCAAACCAATTAAAGTTCCAtatggATTTGATGCCCTCGGCTCTGGATTTGAAGATGTCGACATTGATACAGAACGTCTTAGAGGTCCACCTGGTCCTCCGGGGCCTCCAGGGAAACCTGGCCCACCTGGTCCCAATGGCCCCTTAGGAGCTTTGCTGCCTGGACCACCAGGCACTCCTGGCAAGGATGGGAGAGTTGGGCAACCTGGACTTCGTGGGCTTCCTGGTCCGGATGGCTTAACTGGACAACAGGGTCCCAAGGGAGCAAAGGGTGAACAAGGAATGAGAGGACCCTCTGGACCAAAGGGTGAAAATGGTAACTCTGGCCTTACTGGTCCTATGGGACCGAGGGGTGTACCTGGACCACCTGGCATTCCTGGGCCTCCTGGGCCTCCTGGCCCACCAGGACCTTTAAGCAATAACGTCATGATGGACACTATGAAGgattTGGAGGGTTCTGGTGAAAGCGGATTGTTTCTCGGACGTGGAATTTCAAAAGGCTATCATGGGCCTCCTGGTCTACCTGGCCCACCAGGACCTCAGGGACTTCCTGGTGCAGATGGCCCTGGTTTGTCTGTAAAGGGTGAACCAGGATCGCCGGGACAGGATGGAATACCAGGAATAGCTGGTTTACCAGGTGCCAGGGGGCCAAAGGGGGACAAGGGAAGTCCAGGAGAGAAGGGTGAGCGAGGTCATGATGGACTGAGCATCACAGGGCCTCCCGGTCCCCCTGGCATGCCTGGGCCGACCATTAACATCCAGGATctcCTTCTTCATGATACTGCAGCCAAATTGAACCTCACTAAGATCAGAGGACCTCCAGGCCCCATGGGCCCTGAAGGCTTGCCTGGCAGAGCAGGATTTCCTGGCCCAAGAGGACCAAAAGGTGAAATTGGGTTTCCTGGCATTCAAGGACCTCCAGGACTGAAGGGAGAAAGGGAGCCTGGCGTATCAATAGCTGCTGATGGATCTGTAATACCAGGCCTGAAAGGACCCAGAGGACCGAAGGGAATGAAGGGAGACATCGGCCCCTCTGGATGGCCTGGGATTGTGGGGCCAATTGGACCACCTGGACAAAAAGGAGAATATGGACTTCCTGGTCGACCGGGCCGAGCTGGAATAGCTGGAAGGAAAGGGGACAAGGgacttcaaTCTGTTATTAAAGGGTCCACGGGCCCACCTGGACCTCCAGGGCCACCAGGACGAGTAATTGGTCTCAATGGAACAGTTTTCCCAGTTCCTCCTAGACCACACTGCAAAATACCAgtcaacaacaacaattcaCAACAAGgCAATGGAAGAGCGTCATTAGGAGTCAAAGGGGACAAGGGTGATGTGGGAAATCCTGGGTTGCCTGgaactgcagtgCCTTTGTTTCCTCATAGTTATGAGGGCGCTAAAGGTGATATTGGCTACAGGGGAAAAGGGAGAAAAGGGGATCCAGGTGTGCCTGGCCCACAGGGGCTGCCTGGGAGGACAGGCCTTGTGGGACCAAAGGGTGACTCAATTGTCGGTCCTCCTGGGGATACTGGTCCCTCTGGGCCTCCAGGACTGCCTGGTTATGGAATTCCAGGACCACAGGGGCCACCGGGACCTCCTGGACCACCAGGCGCTCCGTCTCCGTATGGCTCTGCTGCAAGTCTTCCTGGTCCTCCAGGGCCACCTGGTGCTCCCGGCCATGGAAACCTTGTGATAACATATGAAAACAGTCAAGCCTTGATAAGAGAGACTGTTCAGACTGCAGAAGGGACTCTGGCATATGTTATAGACAAGAGTGAACTGTATTTCAGGGTGAGGGGCTGGAGGAAAGTTGAGCTAGGAGGGCTAATCCAAGTTCGTGAGGAAAGTTCCTCACCTGATTTGTCACAAGGCCTGAGCAGACCCAGCGACCGCAGTGTACCTAGAGTTCATAGCCAGGAGTTGAAGAGCTTCCTGCCAGACTACCATGTTTTTCAACAGAACGCTCACTCAATGCCAGTGTTACACCTGGTGGCACTCAATGCCCCGTTCACAGGGGACATGCACGGAATCCGAGGGGCAGATTATCAGTGTTACCAGCAAGCCCGTGCCAGGGGCCTGACATCCACTTACAGAGCTTTCCTCTCCTCTCACCTACAAGACCTTTCCAGCATCGTCAAGAAAGGGGACCGCTTCGGCCTGCCAGTGGTGAACCTCAAAGGAGATGTGCTCTTCGGCAGCTGGATGGCTATGTTCTCTGGTGACGGGGCTGTTTTTGATCCACTTACACcgatttattcctttgatggaCAAAATGTCATGACAGAGCAAGCTTGGCCTCAGAAACTGGTGTGGCACGGCTCGAATACCGCAGGCATCCGAATGACAACTAGCTACTGTGAGGCCTGGCGGACCGGGGATATGGCGGTGACGGGACAGGCGTCTCTCCTGCAGACCGGCAGGCTGCTGGGACAACACCAGCGTAGCTGCTCAAACCACTTCATTGTGCTTTGCATTGAGAACAGCTACATCCAGAACCCTGGAAGGAACTAGAAAGCTGacaattttaaagtaaagtaatgCAGATGTAGGGAGCAGCGGTAGCTGGACTGCTGGGGGAAATATCCAATCTACTCTTTTATTAGGGAGAGAGCTCCTGCGAGAAGTTACAAGCCAGGAAAAAATGGCACTGCAATCATGTTTCACTTTTTCTCTAAGCatgatgtaaatatgtataaatcaCCCACTGATACTGTTCAAGCAACGACCCACCGTCTTCTATTAGAATACCAAAGAATACCTCAGCCAGGCAATTGTAGATGTATTTTATGAATTCACCGCATTACTCTGTGCCTTCTCAGATGACGTTAGCCCCTGCTCACAACGACTAATACAGAGTTTCTGTGTGGATTGGTAATGTATTAACTACAAATTTGAAACCACAAACATCGATAGAAAAAGatacttatttttaatcagattaAATGGCAATATTTAGACATGAATATTTGGATATACCATATTCATATGAGAGAGTTTTGGAACTTGTTTAAATgcactgtattaatattttctcGTTTCGTTTTCTTTTACACACTCACGGAGCTCCGGTTTTGTGAACTTGCATTTAAACTAGTATTTAAGAGAGGCGGTAAGtctaatttataatgtaaaagcagcacataaaactaaaaaagtacaTACTTTAAAtggcattcattttaaaagctgaaagAGGCCACAACCACATTATAACTTTTCACTGTTTAATCTTTCTATGACATTTAGAAAGATAAAGTAGAAAGTAAGTAACAGTGTTGTTTATCTTCTAGTATGAAACAATAATAGAGAATTAcc

Function

GO:

id name namespace
GO:0001654 eye development biological_process
GO:0007155 cell adhesion biological_process
GO:0005581 collagen trimer cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06823 COL18A; collagen type XVIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16483 lncRNA downstream 34782 10757190 ~ 10829289 (-) False G11101
TU16484 lncRNA downstream 34782 10757190 ~ 10829289 (-) True G11101
TU16482 lncRNA downstream 35432 10757190 ~ 10828639 (-) False G11101
TU16487 lncRNA downstream 35919 10756589 ~ 10828152 (-) True G11103
TU16473 lncRNA downstream 46050 10746541 ~ 10818021 (-) False G11096
TU16507 lncRNA upstream 8276 10897549 ~ 10902543 (-) False LOC122359462
TU16514 lncRNA upstream 26798 10916071 ~ 10918689 (-) True G11115
TU16517 lncRNA upstream 63654 10952927 ~ 10978280 (-) True G11118
XR_006252710.1 lncRNA upstream 212249 11101522 ~ 11104592 (-) True LOC122359508
TU16650 lncRNA upstream 212268 11101541 ~ 11104592 (-) False LOC122359508
XM_043259526.1 mRNA downstream 2476 10831110 ~ 10861595 (-) True LOC122359216
XM_043259254.1 mRNA downstream 137225 10710965 ~ 10726846 (-) True xirp1
XM_043259352.1 mRNA downstream 179416 10669470 ~ 10684655 (-) False cdyl
XM_043259342.1 mRNA downstream 179416 10669470 ~ 10684655 (-) True cdyl
XM_043259675.1 mRNA downstream 199001 10664288 ~ 10665070 (-) True LOC122359387
XM_043259774.1 mRNA upstream 8281 10897554 ~ 10902625 (-) True LOC122359462
XM_043259645.1 mRNA upstream 265989 11155262 ~ 11159313 (-) True LOC122359349
XM_043261904.1 mRNA upstream 317171 11206444 ~ 11227249 (-) False slc12a7a
XM_043261896.1 mRNA upstream 317171 11206444 ~ 11227248 (-) True slc12a7a
XM_043261925.1 mRNA upstream 317171 11206444 ~ 11227247 (-) False slc12a7a
TU16480 other downstream 2517 10767974 ~ 10861554 (-) False LOC122359216
TU16500 other downstream 60783 10800716 ~ 10803288 (-) True G11105
TU16478 other downstream 80120 10769515 ~ 10783951 (-) False LOC122359216
TU16485 other downstream 99180 10758028 ~ 10764891 (-) True G11102
unassigned_transcript_206 other downstream 474448 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16716 other upstream 446458 11335731 ~ 11339597 (-) False trnau1apb
XR_006253162.1 other upstream 492833 11382106 ~ 11405700 (-) False kcnn1a
XR_006253161.1 other upstream 492833 11382106 ~ 11405697 (-) False kcnn1a
TU16731 other upstream 553145 11442418 ~ 11445113 (-) False cnn2
TU16759 other upstream 559485 11448758 ~ 11449423 (-) False crsp7

Expression Profile