RNA id: XM_043259966.1


Basic Information

Item Value
RNA id XM_043259966.1
length 7591
RNA type mRNA
GC content 0.41
exon number 13
gene id slc6a9
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15521048 ~ 15564330 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACTTTCTCATTATTTCTGCTCAAGGATACCAAGAACATGGTGACATAACTTTCTTATTTATATCGATCTGAGCAGGTTGTTTTTAAGATGGTTGACTTAAATCAGCAgaacataatacataaaactCTGCATACATTCGTAATCCCTGACAATGCAGTCTAAACAAGCTGCATGAATCATAACATCATGCTTCTGTATGACGTTCTGACAGTATCCACAAATATTACATAAGTAATGAATAGCCAATAGCAAGTTCagaacaaatattatatttaaaatatttgctttaaacaTTGCGAACATGTAAATgctttaacaaatattttgctgtcattgcagccaggaacagagttgatttaaatgttgtttctccaGGCCAGTGAAAACAATGCTGCACATTATACATgacaaacaatgttttaaagtgATCCGTCTGTTTCCTCTAATGCTAATGGACTctgaagatgtttttttcagtctaGAAGCTAAAGTTGCATGACATTACATCTCTATGTTTGATGCCAGCCAAATTTGGACTGATTTATGCAACCCTGAATGCCTTCAATGGGCCTTTAAAAGTTCTCTAATTGGCCTTCTTGGcatattgtgatttaaaatgggTCGTTCCCCAAATTCAGTCCCTCCATAACAAATTCATTTGTCTCTGTTTACGAATGCGAATAGCTCAGCAATAATAATGAAAGTCAGCCCAGAGTACATCGATTGAGAAAGGCCAGTGGATTCTGTTTATATGTGATTCATTAGAACAAGCTAAAACAGAATCTAGAAACAAAAATGCTAGATGAAAGTTTGTGAAGAGCAAGTAAACGGCTCACATTCCCTTATCGTTCTCATTGAGCTTGGCAGTGTTAAAGGTGTCTGCATGTAGACTTGGTTTTCTGGTTTTCAATGTATGTTTTGAATCGTTTGTGATgcctttattgttatataatacataacaaTGTAAAATGATGTAACAGCCTATAACCTTAAAGTTGGTGGCAGTGAGTAGGTAGAAGCAACCAATTTGAATATGCTCTTTGCGACCTATTGAAACTCTGTAAAGCCACACCTCCGGGCTCCTCCCCTTTCCCCACCCACAGCTCAAGGGTAGAATAGGTTCCACATGGAGCCGTGTCAGTCTGCTCTGACCCTGCTTACACGCTGATGCTTGCCTGAATGCTGTAGGTTCCTGTATGTGTAGGCGCTATTAGCTGGGGTTTACAATGGACAGCAAAAAGAATGGAGCAGTTCCAGGAGAGCCAGTAAAGAAAGATGAAAACTCCAGAAGGGGAAACTGGGGCAACCAGATTGAGTTTGTCCTCACCAGTGTTGGCTACGCAGTGGGTCTGGGAAATGTCTGGAGGTTTCCTTACCTCTGCTACAGGAATGGAGGAGGTGCCTTCATGTTCCCATACTTCATCATGCTGGTGTTTTGTGGCATCCCTCTGTTCTTCCTGGAGCTTTCCTTTGGGCAGTTTACCTCCCTCGGGTGCCTGGGAGTCTGGAAGGTCAGCCCCATGTTTAAAGgtGTGGGGTATGGAATGATGGTGGTCTCTACCTACATTGGGATTTACTACAATGTGGTgatatgcattgcattttattacttCTTCATGTCCATGACAAACCTGCTGCCCTGGACGTACTGTAACAACCCCTGGAACACTCCTGACTGTGCTGGAGTGGTGGGCACTCCACGAGTGAACGCCACCTTTGCCAATGTGTCTGCTGTCATGTCAGGGGTGAATGAGATAGTCAACCGCACCAAAAGGACCAGTCCTAGTGAAGAGTACTGGAGGAATTATGTGCTGAATATCTCTGATGGTATTGGGAACTTCGGGGAGGTGCGTCTACCTATCCTGGGCTGTCTAGCTGTATCATGGGTAGTTGTGTTCCTCTGCCTTATTCGAGGAGTCAAGTCATCAGGCAAGGTGGTGTATTTCACAGCAACCTTCCCTTATGTGGTGCTGACCATTCTCTTCATCAGAGGAATCACTCTGGAAGGAGCCGTCAGTGGTATCAAATACTATTTGACCCCTCAATGGGAGAAAATTCTAGATGCCAAGgtATGGGGGGATGCTGCCTCTCAAATTTTCTATTCGCTGGGTTGCGCCTGGGGTGGGCTTATTACCATGGCATCATATAACAAGTTCCACAATAACTGTTTTAGAGACAGTATCATCATCAGTGTAACAAACTGTGGTACAAGTGTGTACGCTGGCTTCGTTATTTTCTCCATCCTGGGATTCATGGCTAATCATCTGGGGGTGGACGTGTCAGAGGTGGCCGATCATGGGCCAGGCCTGGCGTTTGTGGCCTACCCGGAGGCCCTAACATTGCTGCCCATATCACCACTCTGGTCCCTGCTGTTCTTCTTTATGCTCATTTTACTGGGCCTGGGTACTCAGTTCTGTCTACTGGAGACTCTGGTGACGGCTGTAGTAGATGAGATCGGAACTGACTGGATTATCAAAAATAAGACCTATGTCACACTGGGAGTCGCTATAATAGGATTCCTCCTGGGAGTGCCTCTGACCACACAGGCAGGAATATACTGGCTGCTGCTTATGGACAACTATGCTGCCAGTTTCTCTCTGGTCATCATCTCTTGCATCATGTGCATCTGTATAATGTATGTCTACGGCCACAAGAACTATTTTAAAGATGTGGAGATGATGCTGGGCTTCCCTCCTCCGATCTTCTTCAGGATCTGCTGGAGATACGTGTCGCCTTTCATTATTACTTTTATTCTGATTTTCACTGTGATACAGTACAAGCCTATTACCTACAATGACTATGTATACCCCAGCTGGTCATTGGTCATTGGGTTTGCCATGGCTTTGTCTTCAGTCATCTGTATACCCATCTATGCTCTGTTCAAGATTGCTGTGTCTGAAGGATCTACATTTTTAGAGCGTTTGAAGAACTCTGTGAAACCTGACCCAGACTGGGGCCCTGCTCTCCAGGAGCACCGCAAGGGCCGATACGCCACCACAGGCCCCGAGTCAGTGGAGGTGTGCCCTCTCAAAGAAGACCTGAAGGACGAGGGTAAAGAGAAACTCAAGGAGAAAGAGGATGAGATCGGTTTGACCATCCCAGGAAGCAACGGCTCCACATTAAACCCCTCACCAAGCGCATAGAGGAGCCCCTCCCCACCCTCCCCCCAGGACGGTTCCCATTCCCACACTGCGGGACAGGCCACTCTCGCTGGAGACCTTTACATATTGTAAGGGCTTTATGAAATCTAACCTCTAGAGAAATTGGTTGTCATCcaaaacctttttctttttgttgacataatttaatattgcagtttttttaaaaagacaagaaaaaagaCGTGTTCATATACAGGAGGTCTTTGCATACACGCAGTGTGTATATAGCGCATTGTACAATATTTTCACTCTGTGTTGAGTAGTCTGGAAAGGTGACTGTAGCGGCAGCAGGAGCTACAGTGGGACTTGGCTCGTGTGTATAGTGGCGGCAGTGCTGGTCAGGTTTAATAGCTGAGGACCAAATATTCTTTGTGGCAATGTTGTAAAGGCACTGTTAAATGGAGTGTTATTTTCAGTTGCTGTATTGTACCCTTTTTCTTGTTTGGGAACCATCTCATCCACAAGCCGATATGGTTTTTCAATGGCCATTGTTGGTGTCTGAAAGCAGGGTGGCTGATGGTCAATGTAATGACATAATGCATGTTAAATGACCTTTTAACACCGTGATAACTCAAAATCCACCTAAAACTACGAAACAGAACTTGTATATTATCCATTGGCCGGTTGACAAAAGTGTTAGCGCCAATATTTACTGGAAATCTAGTCAAGTAGACTGGCTGATACCgataaaccaataaataataaagcataGGCCAAGAGAATATCAACTTTATTTCCATTTAAGTGAGAGCACAAATACAAAACGAAGGATATTTGGTCTTAAGCTCTTACTGACTGAGGTATCTGGACCGAGGCATATAACTTCTCAAGCCCATTCTCAGGGTTACACACAATTTGCTTTTTCGCAAAACATTTTCCAACACCTTGAGATGATTTATTGCTGATGTTGAGTGTTTGACATGAAGGAGAGGGGTTTTCATGTAGGAGCGTCCACATGAAATGCCAAATCTGTCTAGTCTTCCGGGCATCTCGAGCCGAGGCATCTCCTGAGCGAGGGGAGCATGTGTGCGATAACCGAAGCAGCTAGTTCCTCTTTAGATTCAGTACTGTAGTATGCACACTAACCCCGCTCTACACGGAAAAAGAGGCATGTTACCAAAAACATGTGCACAGACCTTTGTGTTCTGATTTAGTTggtgtgtttgtatgcattttttgttgTCTATGTGTGTTGAGAGACTTGAACtggtgtgtgtgtcatttaaaGGCATCTGGCTATGCTTAGTCATGTCATTGAACATTTGAATAAAGGGTAACTGCATGTGGAACGATCAGAAGTAAACAGCATCAGTCAAAAATCGCTTAGTTGGTGAAATCGGAGAAGTCAACTTTTCTGgcctaatattttaaaacaacattaatagcCTTGCTAGACGCATAAAAGGCCAAACTATCCAATGCTCATGGTAGAAACCATAGCATGTTACGTTAATGTGGTGCATTCTGTTTCGTTTTGGTTTTGTGGAGAGGGGATATATTGGTATGGAGAATTTTGGTCATATTGTTGGTATGGCTAGATGCCGCATATCATATCATTCCAGTGACGTTTCTATAAGGCCCCTTATGATGCATACGGTTGTTGTGGCACATATTCATGAAGAGTCCTGGTTACACTGTGAATTTGTCTGGGATGTTGCCCGACGCCTTTTAACGGGGAGTCTGGCAACGCAGCTGCTAATGTGCTGATGCATCACGTATTGAGACTTCTGATTAAACAGTGAATCTTTGTATATAGTCAAGTCAAAATAGTTTATTTGGTATTTCTCTCCTGTGTTGTGCGAGGAGGAATGCAGTATGTGACGTGCTCTGTCATTTTGAGTCAGAACGaggcaaaaaaaatgctttgttgcATTGATTTTGATGATACAAAGTCTCAGCTTATTTGGGCTTTCAGAAATTCGAACATGTCATTTTGACATCATAGATCGCTAACGCTGCCTCACATTTTAAAGGCAGCGCCGAGAGCGGGCGAACTgatcaactttttttctttactagtTATAGCGCAAAAACGAACGACGCTTACTAAATTTTACGTCTAATGTGATCACGTTTCATGTCGCAGAAAGATGTGAATTAAACAGCTCGTGAACATTACCTGATGTTACATTTACCTCAGGAAAGTCATTCaatgtccaaaaaaagaaaacgtagAAAAGAGCATGTtagtaaaattgtaaatgtataacCGTAAACGCGTTATATTTCACTCATTGATGCCTTAAAGTAAGATTGAATAAATCTCCGTGGTCTGTCAAAAAGGCTCTATTATGACAGcaccatttaattaattttccgCATTGGATCATAAATGAcgtttttgaaagttttgatTTTTGAGATTGTTCTTTCAATGAATAAAGTGCCAAAATGAGTCAAAACGATGGAGCAGGTCACATAAAGAGTCAGTATTCAAAAACTTGATGGCATAATAGTCTACGTCAttgttattgtacattttattaatctttgcaTGAAGGtatgatctatatatatatatatttttaagattttatccaaaaatatacaaaacacaatCTAACTATTAAGAAGTAGGGAAAAAAGCGAGAAGAATAAAAGTAACCCTGCTGCCTAACAGGAGGTATCGGACACTCAGGGGAGTAGTTAGAGGTTCACTGGTCTTAGCACAACCATACCTGCAGGTCACAAACTCTAGCTTTTCCTCTGTTAGACAGTTAGTGGAGTAGATTAGAGCAGCAGTTTAGGCGACGTGAGACTAACAGCACTTTTATTTACTGGTTCACTTTAGCTGGCTACGTGCGCAGTAGCTACAGTACGATTAATCGCTGTCGGAAATGTGAATGCACAAGATTGAAGCCCTCTCATTTTTCTGATGTGTGGTCCTCAGAGCTTGAACGTGGCGTGAAGACCATGTGTCTGTCTCTATGTGAACAGACCTGGATTTTGACCTTGACATGCAGACTCTTTTTAACAATAGACACGTCATGCATCAGTGCTGTTCTCGCACTGTTCCCCATCTCTCTCCGTTGtacagtaatgtaaaaaaaaaaacaaaaaaaaagacaaaaactcaactgttgtgtatgtttgtgttttctgtttttatcagGGTGGGTTGCTGTAGTGgggtttatttttagttgtttttacttcatttcaTATTGTAACTTAGCTAATGTTCTGTGTACAGAGTGTTCGGTGTAGTGGACGTTCAACTGCTGAGTCAAACCTAGTTCATGTTAGTGTCACTATATTGATGTCATGTAATTTTAATCAGTATGTAATTATCCGTTTGTGCCATTTTAACAAGCAGAACCTACCTTTGTAAgagatttttcctttttatttttatagtactaaaactgtattttaccatcaattgtaaacatttttagctATGTTCAGTGacactacagtttttttttctcaaaccaGCTGATCTCAAAATCATTGCCAAACCAAGGCTTTTTActgaaacttgaaaaaaaacaaaacagaaatgctttttacatCAACATCTGGTCAAACAAAATGGATTATTGATGAAGAAGGACACAGTCTAAAGCCAACAATGTTATATCTTCTTCTCAGTATTGTAAACAAGTGTATTTGTAGTGCTGCAAACCCTTTAAGAACATTTCCGTCGATCTGTGATCCAGTTTCATGTATTATGCACAACGTAAAAAAGAAAGCACATTTGATCGCCTGGAAAGAATGTTTTAACACGTATACCGATCTTTGAAttttttggaaatgcatttaaaatgatcgATATTATGTAACATAATTTTATCTGGGTATGTAATGCTTCTGAAAAGAACGCTTTTAAATTGGTTTCGCTCCTAATTTGGCTATTTCTTCACGTGAATTTAATTGTGACGGCGTACACCTTTTAAGGAAACGTGTCAGGGCTGTGTTTAGAAcaagcaaaacagaaaaactataATTGtggaaaatataaacacaaataccTCTAGGTCCAAGATGGAAATGAGCACAGTTTTATTGctgtattaattaaaactatacACAGAATCAGCATATCTCAGTTGAAACTGTGAATTATTTTGGTTAATGTAAACAGCATGATGTATTTTCGTGTTGTTACGGCACTTTAAACATGTACGTGTTTGAAAGCAAcagaaaataatgcaaaaaattacaTCTTTCTCTCCCGTGCCCTGCATCCTGAAAGACTTTACAatatagtgtgtatgtgtgtgtgtacttttgtGCTCATGGCAATATAAAAAACTGAAGTAGAATGACAAGCACAATGACATGAGCTCAGTACTTTATCAAACGTACAGTATCTAACCATGTGTCTTTTCAATTTTAGGGCCAAACAGCATTGAAATTGTCTTAGTCATGTCAGCTGTAAACTGTTCAATTTGAAATggtaaataaagtttattttaaagatca

Function

GO:

id name namespace
GO:0060080 inhibitory postsynaptic potential biological_process
GO:0060092 regulation of synaptic transmission, glycinergic biological_process
GO:0015816 glycine transport biological_process
GO:0007626 locomotory behavior biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015187 glycine transmembrane transporter activity molecular_function
GO:0005283 amino acid molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05038 SLC6A5_9, GLYT; solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252526.1 lncRNA upstream 45471 15498524 ~ 15500314 (+) True LOC122357737
TU18270 lncRNA upstream 292741 15252494 ~ 15253044 (+) True G12321
TU18267 lncRNA upstream 296536 15245312 ~ 15249249 (+) True LOC122357435
TU18161 lncRNA upstream 365531 15178099 ~ 15180254 (+) False G12255
TU18197 lncRNA upstream 394910 15148605 ~ 15150875 (+) True G12273
TU18398 lncRNA downstream 111873 15676203 ~ 15678446 (+) True G12419
TU18414 lncRNA downstream 158756 15723086 ~ 15804921 (+) True G12432
TU18415 lncRNA downstream 167489 15731819 ~ 15741601 (+) False LOC122356092
XR_006252280.1 lncRNA downstream 167500 15731830 ~ 15742798 (+) True LOC122356092
TU18436 lncRNA downstream 246563 15810893 ~ 15811393 (+) True G12451
XM_043253230.1 mRNA upstream 26809 15516806 ~ 15518976 (+) True klf17
XM_043218188.1 mRNA upstream 73950 15360811 ~ 15471835 (+) False rnf220a
XM_043218409.1 mRNA downstream 15813 15580143 ~ 15585173 (+) True zgc:113531
XM_043254165.1 mRNA downstream 129878 15694208 ~ 15705571 (+) True kiss1ra
XM_043254489.1 mRNA downstream 190245 15754575 ~ 15761754 (+) True kif2c
XM_043254490.1 mRNA downstream 190245 15754575 ~ 15761754 (+) False kif2c
XM_043217539.1 mRNA downstream 284754 15849084 ~ 15856755 (+) True klhl20
XR_006252462.1 other upstream 762808 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 763081 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1366170 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1366170 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2672640 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 702713 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1467989 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 1797915 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2002511 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2042922 17607252 ~ 17608092 (+) True G13111

Expression Profile