RNA id: XM_043260008.1


Basic Information

Item Value
RNA id XM_043260008.1
length 4267
RNA type mRNA
GC content 0.44
exon number 14
gene id cacnb2b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14682890 ~ 14709199 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTAAATAAATAAGGAGAGGAACTCAACGAGGGAAGAGCCGAACAAATAAAAAtcgcacacacacctggagcCAGTGGACTGTGAGCCTGTTGGTCTCGAGCATCAGGAGGACAGCAGGAGGATGTGAATCACTCACTTTGACTGACTGCATCGCATTCTTCGCCGTTTGTGGAGGAATGTCCGCTTTTTATACGCTCTGTATATATCTGTGGGCTGGACCGGAGGCTGTGTGGAAAGGAGACACTtacctgctgctgctgatgctgCTATGTCTCTCGTCAGACTGATGTGATGGCTGTCCCTTACAGACAGGGATCCAGAGGCTGCGTGTCACAGAAAGAGTGATTTAGACCCTCTTCTTGGCTGCACCATCATCACGACCCCCCTGGATGTTCTCTTGATGTATTGCTGTGGTCTGGGACACTGGCGGAGAGAACAGTCCACCTATGGTTCGGCGGACCGTCAGGACTCAGGGGCCActgaggagaaggagaagaatgCCCAAGTCCAGCTTGAGAAGGCCAAGTTTAAGCCTGTTGCTTTCGCCGTGCGCACAAACTTTACCTACACTCCTGCGGATGATGACAACGTCCCTATACCAGGGCATGGAGTTTCTTTTGAAGCTAAAGACTTCCTGCATATCAAAGAGaaatttaACAATGACTGGTGGATTGGGAGGCCTGTGAAAGAAGGGGGAGAGGTTGGTTTTATCCCCAGCCCGGTGAACCTGGAGACGATTCTGATCAGAAGAGAGGTGCAGGCCAGGAAAGCCGCCAAAGCACTGGCCAATAAAGCAGCTAATGCTGCCAAAGATGATATGAATGCGAAGAAAGCTGCTCCACCACAAACAGTTCAACAAGTGAAGAAGAAATCGGGAGAGCAACTGGCTGCATATGATGTTGTGCCTTCCATGCGTCCTGTGGTGCTCATGGGGCCTTCGCTCAAGGGCTATGAGgttACAGACATGATGCAAAAAGCTCTctttgattttttaaaacacagattTGAAGGAAGAATTACTATCACCCGGGTGACAGCAGATATTGCACTCGCCAAGCGATCCATCCTCAACAACCCCAGCAAGCACGCCATAATGGATCGCTCCAACACCCGCTCCAATTTAGATGCCGCGGCCCAAATCCAAGGAGAGGTTGAAAGGATTTTTGAGTTAGCACGCAGTCTACAGCTTGTGGTTCTTGATGCTGACACCATTAACCATCCTCTGCAACTAAGCAAGACCTCCTTGGCCCCGATCCTGGTGTATGTCAAGATTTCGTCACCCAAGGTTCTGACAAGATTGATAAAGACCAGAGGCAAATCTCAGactaaacatttgaatgttcAGATGGTGGCCGCAGACAAACTGGCTCAGTGTCCCAATGAACTGTTCGATGTCATCTTGGATGAGAACCAGCTGTCAGATGCCTGTGAACACATCGCTGATTACCTGGAGGCCTACTGGAGAGCAACACACCCTCCTGAAATGGAGCCTCCCAACCCCATGCTGGAGAAACTGGCAGAAAACACACTCCCCACCAGCCCCACACCTGCTAAGGATGAACAGAAAAGCAAGAAGACGGCCGCCACCAAGAGAAAAGGATCTCAAGAGCACCAGCAGGAGCATCAGCCCCAGGCTCAGGAGacgagagaggaggaggaggaggaagaagaggaagtgcAGGAGGAGgccgaggaggaggagaggctCCTTCGTAGCGAGCCAAAGAGACACAgccatcatcaccaccaccatcaccaccaccaccaccgctCCAGCACCAGCCGACCAACAGAGCCCCACAACAAACACCAGCACCACATGCGCCACCAGCAGCCCAGCGACATGGAGCTGCTTCCTGCTAAAGACGCTTCGTGCGTGGAGTCCCGGAGCAGGCGCACGCTCCCGGTCGAGGGCGACCCCGACCAAACTGAGGTCTACCACAATAGGACTACAgctcaaagggaccataaccaCCACCATCACAACCACCACCACCGACATCACCACCACCGGCGCGGAACCATGGACGTTCAGCCGGATTACTCCCACCACGGCCAGCAGGACTACGAGCTGGAGCACAACGAGCACAACAGGCAACAGAGACAGTCGAGCCAGCTGCGCTCGCACAAACAGTCGCACCACTACGCTCACCCGCACCACAATCACTATCACTACCAGGGACGGGAGCGGGACAGGGACATGGACAGGTGCGTCGAGACAGAGGAGTGGACTGAGGACATGTACATTCATCGCTGAGGTGGACGTTGTTTTAATGCTGCTATGTGAAATGCTGGCTATCGTGTACTCAGGACAACATGGTTTCTATTTCTTTATCCATTCTGCTGCGTTATGGCCACATCTGATTCCCTTGATTGTCAGTTTTCATTCATATAATTGTGTTTCTCGGGCTTTAGATTCGTGTGGGCCTGACTACAAGATTTCAGCACATTGGTCCTTCCAATCCTGAGTATGTGGTTACATCTTTGCTCGCTACTGTTCCTGTTTCCTGATATGTACATATGCAAACCGGTCATGTCTACTGCTATGCTCTtacctgtgtttgtttgtcaccCCTAagaaacagaacattttttgacatcctttttttttggccttttgTAGAACGTGCTGCTACATTAGTGGTAGATATGAAGATATTAAGAATATAATAAGGGACTTGCCACATGGAAAtcataattttgatattttcatgGGATTAAATGGGTTAATGCATTCACATTGTGCTGCTATTAGCTGCATGCAAATGAAAGCAAACTAAAGAATTCTCACTTGGGCTTTTCACCTCAAGGATTGGAAGGTCTGTTTTTTACCAATATTCAAACAAGGACAGTCTAGTctagttattttttatgaatttttccaccttatatttaacataaaagtGCTGCCATTTGTAATTGAAATGTGCAAGGCTTCCGAGGTCATTTGCTTCCGGTTATATTAGCTGTACTAAAACAATCCATTATGCGGCTTGATATTTAAAACTGatgtttgttatattaatttagttGATCAAAGTCATAAATGCGCTGATTTGTATCTTAAAGAAATTTTAGCTTCAAATAATtgtgtactttttttagtttcGGTCATTTACCCGTCTCGCCTAATGAATCTGAAGTCTTGcacatttacatacaaattCTTGGATATGTTGGGTGTTCAAATATTTCCTGTTATGCAAGtgtaaaacacagaaacaaaaagaaatgtatagtttgatttaactgaaaaaaaactataaacattgtgactaaaaataataatttgaccaTCTCAACCAGCCTGACAGCAACCGCTGTAATcagttttatgtatttgtttgacCAATGGCAGATGGGGGGAGTGATCAAAGCACCTGTCTGAAAAAATCATTACTACTATTTCCATATAATGACACTACTAAGAGCATAAATTACTGTTTGCAACCTATTTTCCAAATTCTGACAAATCTCAGACAttcattgattttaatatttcgGTTTAATGTTggctttaatatatacatagttcagtgtttattttggcCTGGTTTTGTAGAttgtcacaaaaaaacaatccagattttattcagtaaatttcATACAAAAAATAGCTTGTGTCAATACAAAGACCTTCAACTCTGGAGCCATACTATGtgttatttacaaaattatttcaaatgaacacttttaatgtttatgaacGTTCTGttccatatttataatatatacaatgaGATCATTTTAGCCAAGCAGCTGCATGTATTTatgattttcaaaatgtttgttcgaacatatatacagtatcaaattgatgtatatttttttctttatcgtTACTTTCATTGTCATGAAGTAAAAAGGCACACTCAAATGTCCTGAGAGAAATAAGTACAATGATTTAGAAAACACctactgtattttattacaaCAGCATGGTATAAGATTTGTTTCCGGTTTTGTTAGAAATGAAGACAGGAAGATGGCAATGATCTCTTCAcattaaatgatgtttatctACACTTGATACCTTTATGTTTCCTGAGTACTCTATGCATTAGTTTGTGACAACACTCTAGCTTGAAACTTGTTTCTATGCATTTGTATATACCTCATAATGCCTTTGTAGATACTGGATTGATAAAACTGAGTACAGATACTGCTGCACTGTAATATAGATGTACTTCTGTATTCAGATGGTCTGACTGTATATTGTCTTTGAAATGTTCTCCTAAACAAATAATGCACACGTATGATTTacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17661 lncRNA upstream 45085 14637589 ~ 14637805 (+) True G11918
TU17660 lncRNA upstream 46121 14636444 ~ 14636769 (+) True G11917
TU17656 lncRNA upstream 79345 14559860 ~ 14603545 (+) True G11914
XR_006252197.1 lncRNA upstream 185017 14495450 ~ 14497873 (+) True LOC122355240
TU17635 lncRNA upstream 245481 14388985 ~ 14437409 (+) True G11898
TU17912 lncRNA downstream 40018 14749217 ~ 14749651 (+) False plxdc2a
TU17944 lncRNA downstream 113962 14823161 ~ 14826945 (+) True G12135
TU17945 lncRNA downstream 117852 14827051 ~ 14829486 (+) True G12136
TU17957 lncRNA downstream 148173 14857372 ~ 14886069 (+) True G12143
TU17961 lncRNA downstream 156999 14866198 ~ 14878772 (+) False G12144
XM_043257043.1 mRNA upstream 1558 14678449 ~ 14681332 (+) True tmem236
XM_043260478.1 mRNA upstream 5583 14669402 ~ 14677307 (+) True stam
XM_043260467.1 mRNA upstream 14465 14643504 ~ 14668425 (+) True colec12
XM_043261377.1 mRNA upstream 47206 14609754 ~ 14635684 (+) True yes1
XM_043219660.1 mRNA upstream 202042 14461913 ~ 14480848 (+) True lpin2
XM_043256644.1 mRNA downstream 16961 14726160 ~ 14745958 (+) True si:ch211-106h4.4
XM_043256653.1 mRNA downstream 16961 14726160 ~ 14745958 (+) False si:ch211-106h4.4
XM_043256772.1 mRNA downstream 36908 14746107 ~ 14753161 (+) True plxdc2a
XM_043256760.1 mRNA downstream 64625 14773824 ~ 14775496 (+) False si:ch211-106h4.12
XM_043256751.1 mRNA downstream 64626 14773825 ~ 14775496 (+) True si:ch211-106h4.12
TU17566 other upstream 503275 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 503275 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1809745 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1809805 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 2056503 12623823 ~ 12626387 (+) True LOC122358236
XR_006252462.1 other downstream 67123 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 67123 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 1557844 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2323120 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2653046 17362245 ~ 17367861 (+) False sppl2

Expression Profile