RNA id: XM_043260123.1


Basic Information

Item Value
RNA id XM_043260123.1
length 5684
RNA type mRNA
GC content 0.44
exon number 26
gene id pld1a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11908073 ~ 11937590 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTAGTCTGTTTGGAGTCATAGAAAGGGAGAGGGACTCTTTTAACACTGCAAAACTATGAGTTAGCCTTTCATTGTTGTGGGAGTCAAACAGCTGGTTTATCATGTGGGAATCACGTCTACCAAGCCAGGCAATGCTGGACTTTGATGCTTACGAGTGCTAAATATGCTTCAACGAGCCCTTAAGAAGTAACTCGATCTGATAAAAGCAGACATGAGTGACACAGTGGAGAACCTGGACACCAGGGACCTGGGCTTCTCAGATGCTGAGGATGAACCTGAAGAGGTGGACTGTGAGTTCAACCCCTCAGGGGTATCCCGTGTCCCATTCTCTGCCGTGTACAAGACCGTTGGCTTTAAAGAGACGGAAGCGCAGGTTTTTCTTGCTGCTGCCCCTGTCACTGCCAAGATCCTCGATGTGGAACGCTTCACCAGGGCCCCGGACCGCTTCAACATGTCCAAACACAGGAGCGTGTCCAAGGCGATGCCGGCCGTGTTTAAGATCGAGCTCAAACACGGGAACTTCACCTGGATAGTcaagagaaaagagaagcacTTCATGGAGCTGCACAGAGAGCTTCTGCGATATAAGACCCTCATGAGGATCCCGCTGCCCACCCGGAGCCACACAGAGAGACGAAAGAGCATAAAGAGGAGCGAGGTGAGACAGATGCCCGCACTGCCTCGGGGAGGTGGAGATGAGCTGGCACGAGAGGAGCAAGTGTCTAGTCGGAGAaaacAACTGGAGGACTACCTAAACAAGCTGCTGAGGATGGCAATGTACCGAAAATACTACGCAACCATGGAGTTTATTGATGTGAGCCAGTTGTCCTTCATTCAGGACTTGGGCCCCAAAGGCTTAGAAGGCATTGTATATAAAAGGTCAGGGGGTCACCGTATCCCAGGCATGAACTGCTGTGGCCACAATGAAGTCTGCTACCGCTGGTCCAAGAGGTGGCTTGTTGTGAAggattcttttcttttgtacaTGAAGCCAGACACAGGTGCCATTTCATTTGTTCTGCTGGTGGACAATGAGTTCATTATCAAAATGGACTCTAAATACACAGAGACCAAGCATGGAGTGAGGATAGAGAACTTGTCCAGGAAACTAGTGCTGAAATTCACTAGTTACAGACATGCAATGTGGTGGGGTCAGGCCATTGAAACCTTTGTCCGGAAGCATGGCAAGGCCTTTTTAAGGACACACCGCTTTGGATCATTCGCCAGAGAGGAGGAGAACATACCCTCTAAATGGTATGTGAATGGCAAAACCTACATGGAGGATGTCGCAAACGCTCTGGAGGAAGCCAAAGAAGAGATCTTCATCACAGACTGGTGGCTGAGCCCTGAGATCTTTCTGAAGAGGCCTGTAGTGGAAGGCAATCGCTGGAGGCTCGACTGCATTTTGAAACGCAAGGCTcaaCAAGGAGTGAGGATCTTTGTTATGCTGTATAAAGAAGTGGAGTTGGCACTCGGCATCAACAGTGAATACAGCAAAAGAACACTAATGCATCTTCACCCAAATATCAAGGTGATGAGGCACCCTGATCACGTGTCCTCCTCTGTATACCTATGGGCGCACCATGAGAAGATTGTAGTCGTTGACCAATCAGTAGCTTTCGTTGGTGGAATTGACCTTGCGTACGGCCGCTGGGATGACCGTGAGCACCGACTGACAGACGTGGGAAGTGTAACACGCTCCGTTGCTCAGGCCATAGAGGAGACTCAGGGACCGGATTCATCCACGCCCAAGAAAAAAGTGTCCACCAGTGGAAACAGCAGCCGGTCAATGACTGGTGACTCAGTGGACCTGCCCAAACTGAAAGGCATCGGCCGCACTCGCAAAACACGTTTCAGTCTGTACCATCACATCCAAAGAGGCCTTCATCATGCTGACAGCATCAGTAGCATCGACAGCACAAATAAGAGTGGCTCAGTGCACAGTCTTCAGACAGGAGTGGGAGAGCTGATGGGAAACACACGCTTTTGGCACGGCAAAGACTACTGCAACTTTGTCTACAAAGACTGGGTTCAGCTGGACAAGCCTTTTGATGATTTTATTGACAGGTACACAACCACCAGAATGCCTTGGCACGACATTTCCTCAGTGGTGCATGGGAAAGCAGCCAGAGATGTGGCCAGGCATTTTATACAGCGTTGGAACTTCACCAAGaTAATGAAGCCAAAGTACAGATCACTCTCCTACCCGTTTCTCCTCCCCAAATCTCACAGCACTGCCAATGACCTAAAGTACCAAGTGCCAAACTGTGTCCAGACCAAAGTCCAGGTTCTGCGGTCAGCTGCAGACTGGTCGGCGGGAATCAAGCACCACGAGGAGTCCATTCATAATGCCTATATTCAGGTCATTGCCAAGAGCAAGCACTTCATCTACATTGAGAACCAGTTCTTCATCAGCTGTGCtgataacaaaaatgtttacaacaAGATTGGTGACGCTATTATCGAGCGAATCATCAGAGCTCACAAGGAGAAGAAGTCTTTCCGGGTGTATGTGGTGACTCCACTGCTGCCTGGATTCGAGGGAGACATTTCCACAGGAGGAGGAAATGCACTCCAGGCTGTTATGCATTTCAACTACAGGACCATGAACAGAGGAGAGTACTCCATAATCTCtcaactgaagaaagaaaTGGATGACCAATGGATGAACTACATCTCTATTTGTGGTCTGAGGACTCATGCGGAGCTGGAGGGCAGACTGGTCACTGAGCTCATCTACGTTCATAGCAAGCTGCTCATTGCTGACGACAACACTGTCATTATTGgGTCTGCCAATATCAACGACCGCAGCATGCTGGGAAAAAGGGACAGCGAAGTAGCTGTGATTTTTGAAGATTCAGAAACGACGCCATCGGTGATGGATGGTCAAGAGTACCAGGCTGGCAAGTTCGCTCTGCAGCTCAGACTGGAGTGCTTCAAAACCATTCTTGGTGCCTTTGATGATCCAACCATTGATGTCAGCGACCCCATCAGCAACGCATTCTACAAAGACGTCTGGATGAGCATTTCGGGTCGGAACGCCACCATCTATGAAAAAGTTTTCCGCTGTCTGCCCTCAAGTCTGGTGAGGAACAAGCAGGAGCTCATGAGCTTCCAGTTCAAACCAGGTCTTGATAAAGAGGACCCTGTTAAAGCTCAGGAGCTGCTGAAGAAGATTAGAGGCTTCCTGGTCCAGTTCCCGCTGGACTTCCTTTGTGAGGAGAACCTCATGCCCTCAGTAGGCACCAAAGAAGCCATGGTGCCCACTGAGATCTGGACCTGATGGCACCAAATGAGAAGCACAACAACGACAATCCACTTCCGTCATGAggataaaaacaaagacagcaCTGTGGTGGACGAAACCTCTCCAGTGGATACGAAGAAGCAAAGGATAGTAAGACAAGCTGTCTGTCAATTGTCAGgaaatttcatattgttttgtatCTCGTCgatgttataaatgtacataatgaTATATGTAATTATCAGCACATATTGTGCTTTtacaataatgtatttaatgagaTGCCAAACAGAAgggctttttaaagaaatgttttatttctaatgtACATAAAGAGATTTGATTTTTATCGCTATAGCCGGCTCATTTGTAGAGGCAGCACTCAAAGTGAAGAGCAAAATGGAGAGTGGAAGGCCTGTCAGATGTAATTTTGTCACTGCAGCCCATTCTTCAGCACGGCGTCCCCAGTGGAAGCGCATCCATGACAGGCTGAGTACAGTGATATGTGTTTTCTGTCTGGTGAACCAGCTCTTAGACGGAGTCTGCAGAGGCTTTTACTGTCCAGCCTCGCTGCCTGTGTCTAAGTGTCAGTGCTCTGGGGAGACCAGACAATCTGTCTGCGAATTAAAGTGCTGAGTAACTGAAGGAAATTGTTGCCTTTCAGCACCAAGCAGCGACGTGTGGCGTCcactttttatgttttcccCTTCACAAATGTGGCACAGGTCAGTTTTCACGAATCGGCGCTCGTTGCCATGTTCACATTGCCCCTTGGTGTTTGAATATCATCGGGTCAGCCTTTTTCAGCAGTTTGCCGCTctatatgtatttttagtgatttttcatgtttttagtttttgcgCTTTTATCTGTGTTTCCCCCCTGAAATAAAAAGTGCTATATGGGAATATACTACCATTCggagtttgggatcagtaagagtTTTTAATGTCTTTCAGAAAGCCCGTCATCCTCACCACTGCTTAATTTAGctgtaataattacagtaaaacaagtTACAATTTTGTGTTATAACCTGATTTCCTGGGGTACCAATCCCATTCAAAAAGAGACCTTAGGAACGCTAAGGGTTAATACATTTTAGTGCTGCCgaacgattaatcacgattaataccattcaaattaaaagtttttgtttacataatgtccgtgtactgtgtatatttagtacgtatatataaatacacacgtatagcatgtattttgaaaatatttacatgtgtatatattacgTAAGCAATAAGGTGCTAGAGGCTATGCTGCATCACGGCTGAAGGGCGTTgaattaaagatgaaagatgcAACATAACGTGAGCAGGGGTCACTCatacttcattaaataaagataaaacttGTATAACAAATTTAACtatattattcatttcatgTTGCTAATAGTGTTGCTCAGTAATACACAGAACCGTTGGGTGAAGTGGTCAAAGCCGTGCCGTATTGTGAATAAAACGTTAAAATGGTTCGTTCCATttctggattctgattggtcagcagctgtgttttattcagtcTCTCGTACCTTGTTGCTTACATAaactatatcatatataaatatatttaatatagaaatgtcacatttttcttaaatgtgtgcatgtgtttgtatttacatatacattagtatacacatacattggctattatgtaaacaaaaactgattttggatgtgattcatTGCGATTAGTTTGACAGGCTACTGTAAAAACAGGCTATATTAGTGCTACGTATGCATGTAATGTTATCTTATATGCcacattttcagcagtcatttgGTGCAGAAACGAGAAACATCttatcgatgttgaaaactgccatgctgtttattatttttgaggaAACCTAATACTTTTTCACAGGATATAAGGCATTGTTTGACATAAAAATCATACGTTTACTGACCCcaagcttttgaatgttagtgtTTCAAAATTTCCACCTAATTTTACCGCCATAATGCAACTCATTTCTGTCACTCATTTCTAGTTGGTGAAATTGTGCATTATAAGTCTGAATGTAGCCAAAGTTTAATTGtctaaaatgtagtttttttttttttttttcctttaaaaaagatgcacaaaaaaagaatcTGCACTGAGAAGTTCACGTTCACAAAGTGATCCAGCATAGCTTCGGAAATGTATTTAACGTGTATCACTGGCTTTGAAGATTCAAGCTCGACGCATCTTCCCTCAGTTGGTGAAAGCAGAGTCGAACCCGACTGAATAACACAGAGCTCCTGCTCTACCTTTTCTAGCACATTTCATAACAAGCATGTTGTCTTTTAGTTATATTAACTGTGAATTTGACAGACAAGGTGTATTTTAGCCGTGACTCCATTTCGATCTGTGTAATAGAAATTTGCACTAAAcaagtttcaaataaattgcaaaaaca

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0001525 angiogenesis biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0004630 phospholipase D activity molecular_function

KEGG:

id description
K01115 PLD1_2; phospholipase D1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16629 lncRNA upstream 289210 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 294507 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA upstream 296986 11610475 ~ 11611087 (+) False LOC122328936
TU16616 lncRNA upstream 406487 11500389 ~ 11501586 (+) False mast3a
TU16609 lncRNA upstream 451209 11456326 ~ 11456864 (+) True G11191
TU16942 lncRNA downstream 163285 12100875 ~ 12101126 (+) True G11419
TU17037 lncRNA downstream 400077 12337667 ~ 12339049 (+) True G11505
TU17175 lncRNA downstream 607763 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 676785 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 678405 12615995 ~ 12621414 (+) True G11595
XM_043263607.1 mRNA upstream 8695 11787692 ~ 11899378 (+) False fndc3ba
XM_043263600.1 mRNA upstream 8695 11787733 ~ 11899378 (+) False fndc3ba
XM_043263615.1 mRNA upstream 8695 11816117 ~ 11899378 (+) True fndc3ba
XM_043261691.1 mRNA upstream 125666 11710184 ~ 11782407 (+) True ppp2r3a
XM_043261695.1 mRNA upstream 125666 11771788 ~ 11782407 (+) False ppp2r3a
XM_043262740.1 mRNA downstream 8572 11946162 ~ 12024898 (+) True tnika
XM_043219734.1 mRNA downstream 87686 12025276 ~ 12033082 (+) True slc2a2
XM_043217077.1 mRNA downstream 97404 12034994 ~ 12039475 (+) False eif5a2
XM_043217084.1 mRNA downstream 97662 12035252 ~ 12039475 (+) True eif5a2
XM_043218259.1 mRNA downstream 130671 12068261 ~ 12089926 (+) True slc7a14a
TU16617 other upstream 402343 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 407995 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 409136 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 566962 11339863 ~ 11341111 (+) False mrpl34
TU16555 other upstream 651309 11240126 ~ 11256764 (+) False kcnh2a
XR_006247874.1 other downstream 342321 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 343000 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 343782 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 686233 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 930393 12867983 ~ 12873145 (+) False rnf152

Expression Profile