RNA id: XM_043260150.1


Basic Information

Item Value
RNA id XM_043260150.1
length 4905
RNA type mRNA
GC content 0.51
exon number 23
gene id astn1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16031983 ~ 16224471 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGTTACAGGACTATTAAATGTAGCTCTTGCTAATGGTTGCCCACTGCAACAAGAAAAATCGTTTTTAATGGTTTGAGGTGGAGAAGCCCAATAACGGACTCCGATGCTGCGCTGTTCCGCCTCTCTCGCTGTCATCACTAAGCCGAGCCGTGTTATGATGACAACAAGAATATTCAGCCGTGGGACGGAGAATATCTGAGTCTTAAACCCTGcgtttttgcttatttttttgacGCAAATAGCTCGATTATCGTGTAGCCAGCGCAGTCCcggtcctcctcctcctcctcctccagcttcCCAGTGTGCCGCTCACCGACTGCCGCAGCCTGACAACCGCTACACGGTCCCCGGCAAGATGCTACTACCACGCTCCGGTGTGCTTATCGGCGTTCTCTGGATTGTCATCTTCAGTCCCGCTGATGTGAAATCTCTGAACGGCGAAGAAGATCAGTCTCAAGACATGGAGTGCAAAATGAAAAGCGTTACGGTATCCGCTTTGCCGTTTTTGCGAGAGAACGACCTGAGCATCATGCACAGCCCGTCGGCCTCCGAGCCCAAGCTGCTATTCTCCGTCAGGAACGATTTTCCGGGCGAGATAGTCGTTGTTGACGACTTGGAAAATACCGAGCTCCCGTACTTTGTATTGGAGATCTCTGGGAACTCTGAAGACATCCCCCTGGTTCGCTGGAGGCAGCAGTGGTTGGAAAATGGTACTTTGCTCTTCCACATCCACCATCAGGACGGTAGCCAGAATCTGCCTGGCCCGGCAGCCACCGCTTACCCTGCCAGCGACTCTGCAGAGGAAGAGCTTCGTATCCTGCACATCTCTGTCATGggTGGTATGATCGCTCTTCTGTTGTCCATCCTTTGTTTGGTGTTAATCCTGTACACTCGTAGACGCTGGTGTAAACGTCGCCGCGTGCCTCAGCCGCAAAAGAGCGCTAGCGCTGAAGCAGCCAATGAGATCCACTATATCCCATCTGTGCTGATGGGTGGACAAGCCCGGGAAAGTTTGAGAAATTCTCGCGGACAAGGGCACAACTCGAGCGGCACGCTCAGCATCCGAGAGACTCCGATCTTGGACGGGTACGAGTATGACATCACAGACCTGCGCCACCACCTGCAGCGGGAGTGCATGAATGGCGGAGAGGACTTCACCAGTCAGGTGACACGCACGCTTGACTCACTACAAGGGTGCAATGACAAAGCTGGCATGGATCTCACTCCAGGGAATGATAGCACAAAACTGTCCCTAATGAGCAAGTACAAGGACAACATCATAGCTACCAGTCCTGTCGACAGCAACCACCAGCAAAACACGCTCCTCCCACACAACACCTCCACCAATCAGCGCAAGCGTCTGTCCAGCAAAACACACGCGGGTTCAACTTTCCTGAACCCGGATGGAGACTCTGGGACGGAGGCGGACAGTGAGCCGCAGCTGACTTTCTACACCGACCCAAACCGCAGCCGCCGTCGCAGTCGAGGTATGAGAAACGGTAACGTCAACACCGCGTGGGGCTCCGGGGGTTCCCCACGGAGTCCTATCAACAAGACCACCCTGACTTTGATCAGCGTGGTGAGCTGTGTGATCGGACTGGTCTGTGCGTCTCACCTCTCCTGTAGCCTCAACGTCAGAGTCATACTCCACGTTCCGGAGCACCTCATTGCAGACGGCTCCAGATTCGTTCTGCTCCAGGGCAGCCAGCTGgacgcctctgattggctgaaccCTGCCCAGGTGCTGCTGTACTACCAGCAGAATGCCAGTGGCCCCTGGGTCAATGATCTGTGTGGCCGCCGTCTCTTGGACCCCTGTGAGCACCAGTGTGACCCAGATACAGGAGAATGTCTCTGTTTCGATGGCTACATGAAGGACCCTGTGCATAAGCATCTGTGTATTCGCAACGAATGGGGTCCAAATCAGGGCCCATGGCCTTACACAATTTTCCAACGTGGCTTTGACTTGGTGATGGGAGAGCAGCCATCTGATCGTATTTTTAGATTCACATACACTCTTGGAGAAGGCATGTGGCTGCCACTTAGCAAAAGCTTTGTCATTCCTCCAGCTGAGCTGGCCATCAACCCCTCTGCCAAGTGCAAGACAGATATGACTGTCATGGAGGACGCAGTGGATGTCAGGGAGGAGCTGATGATTTCTTCGTCCTTTGACAGTCTGGAAGTGCTGCTCGACTCTTTTGGCCCGGTGCGTGATTGCTCAAAAGACAATGGGGGCTGCAGCCGAAATTTCCGTTGCATCTCTGATCGCAAATTGGACTCCACTGGCTGTGTGTGTCCACCTGGTTTGAGTCCAATGAAGGATGGCACCGGTTGCTATGACCACCACATTGGCATCGACTGCTCTGACGGCTTTAATGGGGGTTGCGAACAGCTGTGCCTTCAGCAGCTGGCACCTCTGGAGGAGGACCCTACTCTCTACAACATCCTGATGTTCTGCGGATGTATTGAAGATTACAAGAGAGGAGCAGACGGCCGCTCATGTCAGCCGCTGTCAGAAGCCTGCACTGAGGGAGTGGACTGCGGGGACACAGCTGACATCCCAGCCAACCAGACTGTGTTTGGAGACCTCTTCTATGGCTACAATAACCACACCAAAGAGATTACATCAGGACAGATCCTTAAGGCTTCCTTCAGGCAGAAGAACTTTGCCCGTGGCATCGAGCAGCAGCTCCCGGATGGCATGGTAGTTGCGTCTGTGCCGACTGAAGCGCAATGTCACGAGGAGCTGTCTGACCCAGTCCCTGATCCAGAGTACCTGACTGGTATGGTAAACTACAGTGAGGTTACTGGTTATCCACTGGTTCAGCACTGGAAGCTGCGCTCCATTATGTACCATGTGAAGCTCAATCAGTGGACCCTCTCACAAGCCTTTAGTTCAGCAATTCATTCACTGGATGGGGCCACCCTTCGCAGCGATTTTGTGTCCATTTTAAAAGAGTTTGGCAACCATTTTATCCAGGAGGCAGTGTATGGTTTTGAAGAATCTTGTACCATATGGTATCCCAACAAGCAAGTCCAACGCCAGCTGTGGTTGGAGTACCAGGACATCAGCAAAGGAAACTCTCCTTCGGACGAGTCGGAGGAGCGGGACAAAGAGCCACGCACACTTACTTACCCAGCATACATTGCCAGCCTGCTGGACTCGGGTGCCAAGCGCATGGCGGCGGGGGTGCGCATGGACTGCAGCAGCCAGGGCCAGTGCCCTCTGTCCTGCCACCTCTGCCACATGAGCCCTGGGCCTGCACGTCCTGCAGAACCTGTGCTGCTCAACATCACTAAAGCCACACCAATCTACGAACTGGTCAACAGCAACGAGACCTACCAGGCATTGCAGGAGGCCATGATGAGTGTACTTTGGTGTTCTGCTAAAGGTGATGTTATTGATGACTGGTGTCGATGTGACTCTAATGCCTTTGGCACAGATGGACTCCCGACCTGTGCTCCTCTACCTCAACCTATGCTCAAGCTATCCCATTCGTACGAGCCCAGCAGTTCATTGGTCATCATAGAATGGAATCATGCAGAGCCACCAATAGGAGTGAGGATTGTTGATTACCTCATCAGTCAAGAGAAAGTGACAGAGCGGACTGATCACTCCAAAGTTGAGACAGAGACCATGTTGAGTTTTGTGGATGACATCATGTCAGGGGCCAAATCACCCTGTGTGATGCTTGGGGACATCCCTGATCCCCTCTCATCTATCTCCTTGATCATACGCTGTCTGGAGCCAGACACTACATATATGTTTCGGCTGTGGGCGGTGGACAACACGGGTCGTCGTTCCAGTCCGAGTGAGGTGACGATCAAAACCCCCTGTCCCGCTGTGGACGATGTCAAGGCTCAAGAAATAGCAGACAAGATTTACAATCTATTCAACGGCTACACCAGCGGGAAGGAACAGCAGACGGCCTACAACACTCTCATGGACCTCGGTTCACCAACCCTCCACCGGGTCCTCTACCACTACAACCAGCGCTACGAGAGCTTCGGGGAGTTTACGTGGCGCTGTGAAGATGAACTGGGACCCAGGAAAGCAGGATTGATCCTGTCTCAGCTGGATGAACTCAGCGGTTGGTGCCGGGGTCTCCTCCAGGAACCAAAAATTGGCTTGCGCAGAGCATCCCTCAAGTATCTGTCTTGTCGTTATACAGATACCAAAGCATTCGGGCTCAGCTGGGTGAATCTCGGCCAAGACTTACGTAAGGCCTGTGAAGATCAGATGCTCTCCGTTATGTACAATGATTATGGAGAACCCAAGGAACTTTAAACCGATTTGGACAACAAGAGGACCAGTCAGGGGCCATACCGCAACTCGGCCTCTCTTTTAGGGCTTCTCTTTAGAGAATCTGCTCTATCAGTTTTAACATTAATTGGTCGTTTAATGATGAAGaggaaaatattttctgaaaatatggGCCCATCCTGATTTTTCAAGAAGCATTCAAATGGTGTGTCTCTGggcttgcaaaataaaaatgtacagtgtaCAGTCAAAGGAAAGTCgcattaaagtgtcatttagACCTAGTGGTGTATTTTGTCAAATAGTGCATACACCAGCTTGTATAGGTAGGACTTTTTCACAAGAACTAAAACTATATCTTCTTAATGTGCTGAAAATGTCTGTCTCTGTAGTGCATATAGATACTGTATGGAAAGAGCtataacaaatgtaaatgttaattaactATTAAACACATTACTAATGTGCTGAATGTAGTATTAAAACTAAGGTATGAGAGGTCAAGAAACTGTACAGGAGTTTTTTTAAAGTACTGTATAAGCAGTATTAcgaaaaataaccattttaaagTTGTGTACAGTAACATGtcttgtttatgttttatttcctaTTCCAAATAAAATCGACCAAATTAA

Function

GO: NA

KEGG:

id description
K24479 ASTN; astrotactin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18481 lncRNA upstream 153580 15878134 ~ 15878404 (+) True G12491
TU18465 lncRNA upstream 156234 15875184 ~ 15875750 (+) False dars2
TU18466 lncRNA upstream 156276 15875184 ~ 15875708 (+) False dars2
TU18436 lncRNA upstream 220591 15810893 ~ 15811393 (+) True G12451
XR_006252280.1 lncRNA upstream 289186 15731830 ~ 15742798 (+) True LOC122356092
TU18524 lncRNA downstream 39303 16263774 ~ 16264920 (+) True G12530
TU18588 lncRNA downstream 225682 16450153 ~ 16456532 (+) False LOC122323293
TU18628 lncRNA downstream 466455 16690926 ~ 16693619 (+) True G12607
TU18741 lncRNA downstream 507266 16731737 ~ 16776351 (+) False LOC122361622
TU18738 lncRNA downstream 508750 16733221 ~ 16776351 (+) False LOC122361622
XM_043217526.1 mRNA upstream 156220 15860179 ~ 15875764 (+) True dars2
XM_043217539.1 mRNA upstream 175229 15849084 ~ 15856755 (+) True klhl20
XM_043254489.1 mRNA upstream 270230 15754575 ~ 15761754 (+) True kif2c
XM_043254490.1 mRNA upstream 270230 15754575 ~ 15761754 (+) False kif2c
XM_043254165.1 mRNA upstream 326413 15694208 ~ 15705571 (+) True kiss1ra
XM_043220484.1 mRNA downstream 50599 16275070 ~ 16285558 (+) True cop1
XM_043223811.1 mRNA downstream 100679 16325150 ~ 16443361 (+) True tnr
XM_043217026.1 mRNA downstream 225661 16450132 ~ 16455213 (+) False LOC122323293
XM_043217035.1 mRNA downstream 225895 16450366 ~ 16455213 (+) True LOC122323293
XM_043217636.1 mRNA downstream 271470 16495941 ~ 16497221 (+) True mrps14
XR_006252462.1 other upstream 1249007 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 1249280 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1852369 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1852369 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 3158839 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 42572 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 807848 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 1137774 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 1342370 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 1382781 17607252 ~ 17608092 (+) True G13111

Expression Profile