RNA id: XM_043260207.1


Basic Information

Item Value
RNA id XM_043260207.1
length 3493
RNA type mRNA
GC content 0.53
exon number 22
gene id epb41l3b
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22515405 ~ 22549867 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGATAAGATTTCATAAACGTGCGTGTTTCACGGCTCGGTGCGTTTCTGATTGGAGATACGGATGCTCTTTATTGATCCCTGAAGGAAAAAATCCCTGAAATGTTCCCTAAATGTGACTGGCCATGACGACAGATCCAGGCTCGGAGACAGAACCCAGAGCGCAGCGGACAGACGACGAGCGGCGAGCGGCGGGTCAGTCAGAGGTCAGGTCAGCTGGTCAGCAGCAGCACGAGGAcgactacatttcccagaagTCTTTGCGCAGCAGACTCTCGTTAGGCAGGACTCAGCGGCTGGAGGTCATGGAGTGTAAGGTCAAGCTGCTGGACGGCACGGACTACACCTGCACTGTGGAGAAACGAGCGAAAGGTCAGGCTCTGTTCGATAAGGTTTGTGATCACCTCAATCTCCTGGAGAAGGACTACTTTGGTATAACGTACCGGGATGCTGAAAACCAGAAGAACTGGCTGGACGCTTCCAAAGAGATGAAGAAGCAGATCAGCACCGGGCCGTGGAGCTTCGCGTTCAGCGTCAAGTTTTATCCTCCGGACCCGGCGCAGCTCTCCGAGGACATCACCAGgTATTACCTGTGTCTGCAGCTGAGGGATGACGTGGTTTCCGGACGCTTGCCGTGTTCTTTCGCCACTCACACGGTGCTGGGCTCCTACACGGTCCAGTCGGAGCTGGGGGACAGTGACCCCGAGCCGCAGGGGCCCGGCTGCATCGGTGACCTCCGTCTGGCCCCGAACCAGACCAAAGAGCTGGAGGAGAAAGTGCTGGAGCTGCACCGCGGACACAAaggAATGACTCCTGCTGAAGCTGACACGCTGTTCCTGGAAAACGCAAAGAAACTCTCCATGTACGGAGTTGACCTGCATCGTgccaagCTGCTCAGCCGGCTCTTTGAGTGTTTAGCAGCGGTGCAGGAGGAGGACTCGGAGGCTGTGGAGATCATGCTGGGAGTGTGTTCCAGCGGTCTCCTCATCTATAGAGATAAACTGCGCATCAATCGCTTCGCCTGGCCCAAGATCCTCAAGATCTCCTACAAGAGGAACAACTTCTACATCAAGGTCCGGCCGGGAGAGCTGGAGCAGTTCGAGAGCACCATCGGATTCAAGCTGCCCAACCACAAAGCAGCAAAGAGACTCTGGAAAGTGTGTGTGGAGCATCACACCTTCTTCAGGCTGGTTTCCCCTGAAGCTCCTCCCAAGCGCTTCCTGACGTTGGGCTCAAAGTTCCGCTACAGCGGACGAACACAAGCACAGTCGCGTCGCGCAAGTTCTCAGATCGCTCGCGCCGCGCCACAGTTCCAGAGACGCCACACCGTCACGGCCAGCATGGACAGCACGCCCGTTCACCATGACGACGGGAAAGACGCCAAACCCGCTGTCGCCACGGACGACGTCATCGCCACGGAGACGCCGGAGAAGAAAGCAGAGGAGATGAACTCGGTGGAGGAGGAGAATAAAACCAACAGTGACGAATCAGAACAAGCCCCGCCCACCTCCGTCACCAAGTCGTGTCCGTACTCCTCGGATCCGTTGGGGTCCGAGCTCTCCCTCCCGTCTTCTCCCGTCTCGTCCACCAAAGTGCGCCGGAGACGGCGGGAAAGCAGCCGTAAGCGCGCCGCTTCGGTCAGTCCGGCCAAGACCACGGCGGGCTGCCGGCGGCGCCAGGCCCAAGCGGACCGTAAAGCGGCTCTCCTGGAGGAGCAGGCGCTGCTTCTGTCCGCTCGCAAGCAGAGGCTGAGCCAGAGGCGAGGAGGAACGCTCTTCTCCTTCTCCCTGCACCTCCCCGACCTGCCGTCGCTGCTGGACGAGGACGGGTACCTGAGCTTCCCGGACCTCACCGAGCTGCGCTTCCTGCCCGAGAGCCTGCATCACTTCATGCCCATCAAATCTCCCTCGCTCATCCCCTGcttcctcttcatcttcttcttcctgCTGTCCACGTCTTTCTCGGTGCCGTACGCTCTGACGCTCTCCTTCCCGCTGGCGCTGTGTCTCTGTTATCTGGAGCCCAGAGCGGCGTCGCTCGGCTCGTCTCTGGCGCAGGGCTTCCAGGACACTTCAGAcgacgagacagacagcgaTCAAACCGACTTCACTTGTGACGAAGACACATCGGCGACGGAGTCTGACTTTGAGGACAGCTTTGACATGAAGACGCAGATGTCAGAAGAGGTTAAAGCTGAAGCTGAAGATGTCCCAGTGAAGCCGGATCATGAGCAGTCAGAGGAAGCGGTTCAAGATGTTCCTGTGGTTCACACCGAGACCAAGACCATCACATACGAGTCTTCAGAGgttgATGCCGATGGCGACTCCGATCCAGGCGTCTTCATGAGCGCTCAGACCATCACCTCAGAGAACAACAGCAGCACCGTCACGACACACATCACCAAGACGGTGAAGGACGGAGTTTCAGAGACTCGCATCGAGAAGAGGATCGTCATCACCGGAGACACAGACATCGACCACGATCAGGCTCTGGCTCAGGCCATTAAAGAGGCTAAAGAGCAGCACCCAGACATGTCGGTCACTAAAGTAGTGGTTCACAAAGAGAGCGAGATCTCTCCGTCTGACGGTGACGCGTGACTCCGGAAGGAATAAGATCCAAACGTCCCCTTGAACTCATCGGCCGAGACCAGCAcgcgacctctgacctctgacccaaCCCTCGCTGACACGATGGactcaaaaaccaaaaaaaaggggaaaatgaaatgtccaggaaaaaaaatctctgccttaaaaaaaaaaaaaaaaaaaaaaaaattcttcaaatgattcagaataGTAATTCATGCCACTTGAGTTTATTTGTAGTGAATCTCCCAGAAACACGTTTCCTTGAAGTGTATTTTATCTCCCAGACGTTGCTGTGCTTTTCCTGTGTTTTATGCAAAAACGAGCGACGAGgagaaaaagctgtttttaaggGCTTTTGGTGACTTTGTGAAGCAGCGGTCAGCAGGAATCCCTCcgcctgacctttgacctttcccTGTATTTGTCCGGTGTTTTTAGAGCGTGACGAGAAACAGAGATACAGGCGATccttgtgatttttcttttgagtttttattttggaataaaatacaGTTGAAATGGATGCGTTTGTGTTCCTTTGAGAATCATGCGGCTGCATCcatagagagagatatatatagaaataatctTTTATGAGCAGATGCAgctctttttaatatttcagagatGTTTTTTGCTGTAATAAAGCTGCTGGTTATTAAGCCTTTTATTCACAGAAACTAGCGACGTACTAATTGAATATTTTCCCtttcagtcattttagagcCTGGCCAAACTATAGACATCCCTGCTCCTTCTAGACACGCCcttatatttttaagagtttatttCCATGGCTTTTTCATATATCTATAAATCATACTTTTTATAATTCTCTCCTAAATTCATGTTTTCCAGGAACGTGAGCGTCCTGCTTCTGAAATAAAGACTTATTGAATTGAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21471 lncRNA upstream 9187 22512171 ~ 22513937 (+) True G14540
TU21458 lncRNA upstream 46922 22475781 ~ 22476202 (+) True G14535
TU21455 lncRNA upstream 50521 22467860 ~ 22472603 (+) True G14532
TU21457 lncRNA upstream 59271 22463034 ~ 22463853 (+) False LOC122327302
TU21389 lncRNA upstream 608096 21913520 ~ 21915028 (+) False G14484
TU21472 lncRNA downstream 25056 22574923 ~ 22576292 (+) False G14541
TU21473 lncRNA downstream 25056 22574923 ~ 22586250 (+) False G14541
TU21475 lncRNA downstream 27156 22577023 ~ 22578223 (+) True G14542
TU21520 lncRNA downstream 83662 22633529 ~ 22670794 (+) False LOC122327931
TU21518 lncRNA downstream 93536 22643403 ~ 22670794 (+) False LOC122327931
XM_043222559.1 mRNA upstream 37469 22461916 ~ 22485655 (+) True LOC122327302
XM_043218532.1 mRNA upstream 196952 22134354 ~ 22326172 (+) True LOC122324242
XM_043263870.1 mRNA upstream 418023 22044868 ~ 22105101 (+) True gpc1b
XM_043253209.1 mRNA upstream 497037 21929297 ~ 22026087 (+) True gpc5c
XM_043256244.1 mRNA downstream 12645 22562512 ~ 22572000 (+) True LOC122357060
XM_043217616.1 mRNA downstream 42732 22592599 ~ 22601454 (+) True LOC122323627
XM_043223690.1 mRNA downstream 89019 22638886 ~ 22640594 (+) True foxl2b
XM_043223672.1 mRNA downstream 109197 22659064 ~ 22665912 (+) True pnp5b
XM_043223680.1 mRNA downstream 109216 22659083 ~ 22665912 (+) False pnp5b
unassigned_transcript_253 other upstream 594305 21928747 ~ 21928819 (+) True trnam-cau_1
TU21370 other upstream 661682 21860891 ~ 21861442 (+) True G14471
TU21151 other upstream 806837 21715355 ~ 21716287 (+) False ccl20a.3
TU21079 other upstream 1040806 21481676 ~ 21482318 (+) False LOC122354659
TU21008 other upstream 1161416 21337682 ~ 21361708 (+) False G14211
TU21525 other downstream 141384 22691251 ~ 22695330 (+) True fcer1gl
TU21973 other downstream 995239 23545106 ~ 23547974 (+) True G14831
unassigned_transcript_256 other downstream 1187184 23737051 ~ 23737122 (+) True trnaw-cca_1
XR_006247041.1 other downstream 1386054 23935921 ~ 23938943 (+) True LOC122323670
TU22269 other downstream 1533971 24083838 ~ 24088441 (+) False LOC122327442

Expression Profile