RNA id: XM_043260312.1


Basic Information

Item Value
RNA id XM_043260312.1
length 1742
RNA type mRNA
GC content 0.43
exon number 6
gene id bpnt2
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6856244 ~ 6879649 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTATTCTGGTTAAGCATGAACTAAGACTTAGCCTGACAGTTAACCTGTTAACCAGTTAACAGTTAaccaacattttaattcaaaattacattttgaccaTAACTATACACCTAAActtaaccttacccatgagtaatgcctaaattcaaatgaattgatagatgaatgacactgatgtacaagcaccaaagaCTGATCTTAAGCATAAACTTCACAGAAActataaattgtttaaatctgACTGATTAATCACAATGCTGTTTCAGGGTGAACAAAGATGTTGATGCAGGAACACGTCGAAATCTGGTTCCGCATTTACACTGAGATGCAGGGCAAATCTCAACAGAATGTTGTGATGCTGAAGCAGTAGAGGGCGCTCTCTGCTCAAACggttttctgtttcttcttgACCTGGAAGAAAAACAGTGTTAGTTCGGCCTTGCCTCATACAACTGTGGACGTGGAATGCATACGGTATTACTCACTGTCAAAGCCATGGATCTGTCACTGTGAGAAAGTAGATATTAATACTAAGACTAGGAAAAATACTACAAATCAATCAGAAAAGCTTTCGATTGAACTAATTTGGATTTGATCGGTGAAGGAAATAAGTTACGTTCATTTAGCTTGCACGTTTTAATAATCGTTTGCGTTTTACTTGCGTTGAAATTACGTGCAAATGATCACCAAAGAGGAACACGTCTAGCTTAGCTGTTGACCCGTTCTCATATTCATCAGCTTTGCTCGCACGTCAGCCTTTGTGATGGCTCCAATGGGCATTCGGCTGTCCCCGCTCGGCATAGCCGTTTTCTGCCTGCTGGGAGTAGGTGTGATCTATCACCTATACGCGGGAGTTTTATCCAGTAGAATCGCCTTATTCAGACAGAAAAGAACTGTGGATCTAAGAGACCTGCTCGCTCTGTCCATGGAGGCAGCGGTGCAGGGCGGACGGGAGGTGAAGAGGATCCGAGAGGATAACACACTAGAAGAGAAGtcaaaaggcaaaacaaaagaaGGGGCCAGTGAAAAGCTCACGCTGGGTGATCTGAACTCCCACCGCAAGATGTTCTACTTGATCAAAAACACCTACCCTTACATACAGGTGAACTCAGAAGAACATGCTGATGCTGAGGGTGAGGCTACTGTTTGGACACGCATTATCCCTGAAGAAATTCTGGGAAAGATCTCAGGGGTGAAGGAGGTTCCTGCAGAAAGGATCACAGTTTGGATTGATCCATTGGATGCCACTCAGGAATACACAGAAAATCTCCAGAAGTATGTCACCACTATGGTGTGTGTGGCTGTGGATGGGGATCCTGTTATAGGTGTGATTCACAAACCCTTCACTGGGTACACAGCATGGGGTTTTGTTGGAGAGGGATCCAATGTGGCACCACGTGCTTCCTACAACACAAACTTTCCTAAGGTGATTGTTTCACGCTCACACTCAGGCAAGGTGAAGAGCTTTGTTCAGGTGGCCTTTGGCAACAATACAGAAGTTCTACCAGCAGGGGGTGCAGAGAATTTAACAGATGATACCAGATCAGCCGAACTGTACACTCAAAAGGATGGGCAATCTAACAGGATTATTACTATGAGgTTATAAGGTACTAGCTCTTCTAGACCCCACTGATGAAGAACAAGAGACAGCTGATATTTACATCCATGTGACGTACATCAAAAAATGGGATATCTGTGCAGGTGATGCCATCTTGAGGTCTCTTGGTGGTGAAATGACA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0006021 inositol biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0052832 inositol monophosphate 3-phosphatase activity molecular_function
GO:0052833 inositol monophosphate 4-phosphatase activity molecular_function
GO:0008934 inositol monophosphate 1-phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14749 lncRNA upstream 13838 6842151 ~ 6842425 (+) True G9901
TU14740 lncRNA upstream 27167 6828447 ~ 6829096 (+) True G9893
TU14739 lncRNA upstream 100171 6755823 ~ 6756092 (+) True G9892
TU14737 lncRNA upstream 114090 6741733 ~ 6742173 (+) True G9890
TU14731 lncRNA upstream 206463 6649446 ~ 6649800 (+) True G9884
TU14775 lncRNA downstream 47446 6925969 ~ 6926177 (+) True G9918
TU14790 lncRNA downstream 122537 7001060 ~ 7001479 (+) True G9928
TU14792 lncRNA downstream 130837 7009360 ~ 7010594 (+) True G9930
XR_006247246.1 lncRNA downstream 157533 7036056 ~ 7036460 (+) True LOC122324999
TU14802 lncRNA downstream 157598 7036121 ~ 7036498 (+) False LOC122324999
XM_043262122.1 mRNA upstream 14170 6840626 ~ 6842093 (+) True LOC122361319
XM_043218864.1 mRNA upstream 367563 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA upstream 367563 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA upstream 367563 6474109 ~ 6488700 (+) True slc35d1b
XM_043219129.1 mRNA upstream 488309 6367192 ~ 6367954 (+) False sst2
XM_043256234.1 mRNA downstream 91970 6970493 ~ 6973171 (+) False penka
XM_043256227.1 mRNA downstream 91971 6970494 ~ 6973171 (+) True penka
XM_043258773.1 mRNA downstream 205611 7084134 ~ 7098176 (+) True cryz
XM_043258792.1 mRNA downstream 205611 7084134 ~ 7098176 (+) False cryz
XM_043258783.1 mRNA downstream 205706 7084229 ~ 7098176 (+) False cryz
TU14736 other upstream 163888 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 165484 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 488309 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 633744 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 635763 6220426 ~ 6220500 (+) True trnag-gcc_20
TU14783 other downstream 107775 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 627068 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1228342 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 2284088 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2868071 9746594 ~ 9751212 (+) True arpc5a

Expression Profile