RNA id: XM_043260325.1


Basic Information

Item Value
RNA id XM_043260325.1
length 6346
RNA type mRNA
GC content 0.54
exon number 38
gene id ptprfb
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7582082 ~ 7690575 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTCACAGTGTGTGAAGAAGCTTCCCTCAGGAAGGACTACAATCAACTCTCTCCACAATCAACAAGAGTTTTACCACGCCACTGGGGAAGCTACTGAAACAAGTTACCGTTTATGAACTGCGGATAAAGACACAACTCTTTTAATGTCGGTCATAGACTTGCCGGATTGAAtatcaaggaaaaaaaaaaagctctatcGTCTGTTCCACTTGAAGCTGTTAACATAGATCTCCCCACCTGGATGATAACGTGCGCAAGGATTTGAATATTTTGCCAATCGCTCTTGGGAATAACAGTCAAGGGAAGAAGGAAACATTCAGGATTTAAGTAAAGGATTACTTCTTCACACATTTCCTctggatatttttcttattttcatattgTAATGGGTTTTAGTCTATGATTGCGTGAGAGCTGCGAGAGCAGAGCAGGGACCGAGAGGGAGCAGTGCCAACCTGGAACATGGTGCCTAATATTTGCACATCCGTGCCCCTCCTGCCCGTCGGGCTTCCTCTTCTGCTACTGCTGAGCTGCGTGCAATTCTCCTCTCAAGCAGACAGCTTGCCAAATTTCATCAAATCTCCAGAGGACCAGACGGGGATTTCGGGAGGAGTGGCATCCTTTGTGTGCCAAGCAGCGGGTGAGCCCAAGCCTCGGATCACATGGatgaagaaaggaaagaaagttAGCTCCCAGCGCTTTGAGgTGATTGAATTTGATGATGGCGCGGGCTCAGTTCTCCGCATACAGCCGCTGCGCACTCACAGAGACGAGGCCATCTACGAGTGCACAGCCACCAACAGCGTGGGAGAAATTAACACCAGTGCCAAACTTACTGTGCTGGAAGAAAACCAGATTCCTCATGGCTTCCCAACCATAGACATGGGCCCTCAGCTGAAAGTGGTTGAGCGAACAAGAACAACCACGATGCTCTGTGCCGCCAGTGGGAACCCTGACCCAGAGATCACTTGGTTCAAAGACTTCCTGCCTGTAGACATCAATGGCAATGGGCGAATCAAACAACTTCGTTCAGGGGGTTCGCCGATACGAGgGGCTCTGCAGATTGAAAACAGCGAGGAAACGGACCAGGGCAAGTACGAatgcgtggctacgaacagcgcCGGGACGCGCTACTCTGCCCCCGCCAATCTCTACGTGCGAGACCCTCGAGGAGCACTGCCTCGAGGAGACCATCGAGAAGTACGACGAGTGCCGCCCCGTTTCTCTATCCCACCTACCAACCATGAGGTGATGCCAGGAGGCAGTGTCAACCTCACCTGTGTAGCGGTGGGTGCCCCCATGCCCTATGTCAAATGGATGGCTGGAGACGTGGAGCTCACCAAGGACGAGGAGATGCCCGTGGGTCGCAATGTCCTGGAGCTCACCAACATCCGCCAATCGACCAACTACACCTGCGTGGCTATCTCATCTCTTGGTATGATCGAGGCAACCGCACAAGTTTCGGTCAAAGCACTCCCAAAGCCTCCTACGTCTCTAATTGTGACGGAAACTACAGCTACCAGTGTTACATTGACATGGGATTCTGGAAACCCTGAACCTGTATCTTACTACATTATCCAGTACCGGGCCAAGTCCTCGGACACTAACTTCCAGGAAGTGGACGGTGTTGCCACTACACGCTATAGCATCGGTGGTCTCAGCCCTTATTCTGAGTATGAGTTCCGTGTTATGGCGGTCAACAACATTGGCCGTGGTCCACCCAGTGACCCAGTTGAAACACGGACTGGGGAGCAGGCACCGTCCTCCCCACCACTGCATGTCCAGGCACGTATGCTGAGTGCCAGCACCATGTTGGTGCAGTGGGAACCGCCAGAAGAACCTAATGGTCAGATTAGAGGCTATCGCATCTACTATACATCTGACCTGGACGCGCCTCTCAGTGCCTGGCAGAAACACAACACGGATGACAGCCGTCTCACAACCATCTCGAGCCTGACTCCCGACATCACCTACAGCCTACGTGTGTTGGGCTTCACATCTGTAGGGGACGGACCCCCATCTGACGTGTTGCAGGTCAAGACTCAGCAAGGAGTACCTGCTCAGCCTTCCAACTTTGAGGCAGAAGCAGAGCTGGATACACGGATCCAGCTTACTTGGTTGTGGCCAGTCCAGGACCCCATCATCAAATATGAGCTGCTTTATTGGGAAGCTGAATTGGAGAACAAGATCCATGTGACGTTTGACCCTGCCGGCTCATACGCTGTTGAAGGTCTAAAGCCGGACACTCCGTATAAATTCTCCTTGGCGGCCCGCTCTGAAATGGGGCTAGGGGTCTTCACTCAACCCATTGAGGCCAAGACTGCCCAGTCCACCCCCTCTGCCCCCCCTCAAGACGTGCACCTGCTCAGTCTGAGCTCCACCAGCATCAAGGTGAGTTGGGTGGCACCACCCGCCGCTAGTCGCCATGGCGCTATCGTGCGCTACACAGTCAGCTACCAGGCAGTGAACAGTGAAGACACTGAGCGTCATGAGGTACCGGACATTGGAGCAGATGCCACCAGTTATGTGCTGGAGGGCCTGGAAAAGTGGACGGAGTATCAGGTGTGGGTGAGAGCTCACACCGATGTGGGCCCTGGCCCTGAGAGCACAGCTGTGCGTGTCCGTACCAACGAGGACGTGCCTGGAGCGCCACCTCGGAAAGTTGAAGTAGAGGCTGTGAACTCCACAGCTATTCGTGTGACATGGAAGCCGCCTCTTTCTGGGAAGCAGCACGGCCAGATCCGAGGATACCAGGTCATATACTCTCGCCTGGAGAACGGGGAGCCACGTAGTCAGCCAAATATATTGGATGTCGCTCTGCCAGAAGCACAGTGGAAAATTGAAGAGTCCACGGAATATGAGGCTGTAATCACTGGACTTCTCTCCGAGACCTCTTACTCCGTTACTGTGGCAGCGTACACAACCAAGGGTGATGGGGCACGCAGCAAAGCCAAAGTCGTCACCACCACCGGAGCAGTGCCTGGGAAACCCACCATGATCATCAGCACCACGATTGGCAACACAGCCCTCATCCAATGGCAGCCTCCTAAGGACATGGTGGGTGAGCTGATTGGCTACCGACTGCGGTACAAGCGCGTGGAGGAGGAGAACTACGAAGTGCGTGAGTTCGCACGCACTGACGACCACCACACCGCCACAGAACTACACAAGGGCGCCACCTACACCTTCCACCTGAGCGCCAGGAACCGCGCTGGAGCCGGAGAGGAGTATATAAAAGAGATCAGCACCCCGGAGGACGTGCCAAGTGGGTTTCCCCTTAACCTACGCGTCGTGGGCCTGACCACCTCCACCACCCGCCTTGCCTGGGACCCCCCGGCCCTGTCTGAGTGCAACGGCCGAATCACGCAATACCTAGTGATGTACCGCGACATCAACAACATACAGAACGGCACCAATCGCACCTCCGACACTCAGATGACCATCCAAGGGCTTCGACCAGACACCACCTATGATATCCGTGTGCAAGCCTTCACCAGCAAGGGAGGGGGTCCCATGAGTCCTAGTATCCAGAGCAGGACCATGTCTACATCACCTGCATTTGCCACAAGTTTTGGTGTCAAAGCTGTGATGAAAACCTCAGTCCTTCTCACCTGGGAAGTACCAGAAAATTATAAATCCCTAGTGCCTTTTAAGATCCTCTATAACCAGCAGAGTGTGGAAGTCCAGGGCAACCTCAAAAGGAAGCTGATCACACGACTGCAGCCGGACACTAATTACTCCTTCGTGCTGATGAGCCGGGGGAACAGCGCTGGTGGCCTGCAGCAGCAGGTCTCGATCCGAACCGCACCGGACCTGTTCAAAACTAAACCTGCCCTGTTCACAGCAGACCAGACCAGCAATGGTAAACTCACCATCAACCTGCCCAAAGTGCCCACCACTGCTCCTGTCAGATGGTACTACATTGTGGTAGTTCCCGTGTCTCTTGCATCATCTCGTAAGTGGGTTAATCCTGATGAGATGGAGCTGGATGAGCTCTTGGAGTCTACTGAGGGAGCTCTGCTCAGGAGACGACGTCACGCGGACACTGTTAGGTCGTACATCGCCGCAAAGCTGTCCTCCCTCCCAGAGACCTTCACCCTGGGTGATGAAGAGACGTACAATGGCTTCTACAACCGTCCCCTTTCTAACAACTACTTTCAGTGCTTTGTCATGGCCGAACTCAAGGACCAATACCCCGTTATTGCCAATGAGAAGCAGcGGACCTTCTCGGCCAGCCCTTACTCGGACCCCATCGTTGTGGATAAACACATTGTGCAGCCCAGCGTGGAACAGCCTGAGATGCTTTGGGTTATGGGCCCTGTTCTTGCAGTAGTGCTAATCGTCATCATAGTCATTGCCATCCTTCTCTTCAAGAGCAAACAGGAGAGGAAGAGGGCGTCCCCCCTACCGAAAGATGATCACTCTGGCGGTGTGAAGGATTGTCTTCTGGCCAACTCGTCTGATCCTGTAGAAATGAGGAGACTCAACTATCAGACACCAGgaATGAGGGAACATCCTCCCATTTCTGTCTGTGAGCTAGCAGACCACATTGAGCGACTCAAGGCCAACGATTCTCTCCGGTTTTCCCAGGAGTATGAGTCCATTGATCCAGGCCAGCAGTTCACATGGGAGAACTCCAACTTGGAGGTCAACAAGCCAAAGAACCGCTATGCCAACGTTATTGCTTACGACCACTCGAGAGTTGTTCTCACCCCCGTGGACGGTGTTCCAGGCAGCGACTACATCAATTCTAACTACATTGATGGTTACCGTAAGCAGAATGCCTACATTGCCACGCAGGGCCCTCTGCCTGAGACTCTGAGCGACTTCTGGAGGATGGTTTGGGAGCAGAGAGCCAGTACCATAGTCATGATGACCAGACTGGAAGAGAAGTCCAGGGTCAAGTGTGACCAGTATTGGCCCATTCGTGGCACAGAGACTTACGGAATGATCCAAGTGACCATGCTTGACGCTGTTGAGTTGGCAACTTACAGTGTGCGCACCTTTGCCCTTTACAAGAATGGCTCTAGCGAGAAGCGTGAGGTCAGGCAGTTCCAGTTCATGGCCTGGCCAGACCACGGAGTGCCTGAATATCCCACCCCCATCCTAGCCTTCCTGCGCAGGGTCAAAGCCTGCAACCCTCCTGATGCTGGACCCATGGTAGTGCACTGCAGTGCTGGAGTGGGCCGCACGGGCTGCTTCATAGTTATTGACGCCATGCTGGAGCGAATGAAACACGAGAAGACGGTAGACATTTATGGCCACGTCACATGCATGAGAGCCCAGAGGAACTACATGGTGCAGACGGAGGACCAGTACATCTTCATCCACGAGGCCTTGCTGGAAGCTGCCACCTGTGGAAACACAGAAGTCCCTGCCCGAAACCTTTACGCCCACATCCAGAAGCTCACCCAGCCGCCTCCGGGAGAGACCGTCACAGCAATGGAGCTGGAGTTTAAGAGACTCGCCAACTCCAAAGCCCACACCTCGCGATTCATCAGCGCCAACCTGCCCTGCAACAAGTTCAAGAACCGGCTCGTCAATATCATGCCTTTCGAGTCCACACGGGTGTGCCTGCAGCCAATCCGAGGAGTGGAGGGGTCTGACTACATCAATGCCAGCTGCATCGATGGATACAGACAGCAAAAGGCCTATATTGCCACTCAGGGCCCTCTAGCAGAGACCACTGAGGATTTCTGGAGGATGTTATGGGAGCACAATTCCACTATTGTAGTGATGCTGACCAAACTCAGAGAGATGGGACGGGAGAAGTGTCACCAGTACTGGCCAGCTGAGCGCTCGGCCCGCTATCAGTACTTCGTGGTGGATCCCATGGCTGAATACAACATGCCCCAGTACATCCTGCGAGAGTTTAAAGTCACAGATGCCAGGGACGGTCAATCTAGAACCATTCGGCAGTTCCAGTTCACTGATTGGCCAGAGCAAGGAGTGCCAAAAACCGGCGAGGGGTTCATTGATTTCATTGGCCAAGTTCATAAAACTAAGGAGCAGTTTGGGCAAGATGGACCAATCACTGTGCACTGCAGtgctgGAGTGGGAAGAACAGGTGTTTTCATCACTCTAAGTATTGTCCTGGAGAGGATGAGATATGAGGGTGTGGTGGATCTGTTCCAGACCGTTAAGACCCTGCGCACACAAAGACCTGCCATGGTGCAGACAGAGGACCAGTACCAGCTGTGCTACAGAGCCGCTTTGGAGTACCTGGGGAGCTTTGATCACTATGCAACGTAACCACTCCTGGACCACAGCCCTCTGGTACAACTCTTCAGGAGTGCACCAAGTGTTCCTTCTGAGCCACCGCTCCCATCCCCATCCTGTACAGAG

Function

GO: NA

KEGG:

id description
K05695 PTPRF, LAR; receptor-type tyrosine-protein phosphatase F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15121 lncRNA downstream 50017 7526339 ~ 7532065 (-) True G10165
TU14934 lncRNA downstream 358481 7211173 ~ 7223601 (-) False dipk1aa
TU14928 lncRNA downstream 375680 7204484 ~ 7206402 (-) False G10029
TU14930 lncRNA downstream 375680 7204484 ~ 7206402 (-) True G10029
TU14882 lncRNA downstream 430379 7149801 ~ 7151703 (-) True G9997
XR_006247832.1 lncRNA upstream 98162 7788737 ~ 7791610 (-) True LOC122328801
TU15162 lncRNA upstream 243826 7934401 ~ 7934625 (-) True G10185
TU15173 lncRNA upstream 379579 8070154 ~ 8070353 (-) True G10194
TU15417 lncRNA upstream 939831 8630406 ~ 8630606 (-) True G10345
TU15482 lncRNA upstream 1064274 8754849 ~ 8755145 (-) True G10389
XM_043255673.1 mRNA downstream 122490 7415442 ~ 7459592 (-) False st3gal3b
XM_043255692.1 mRNA downstream 122551 7415442 ~ 7459531 (-) False st3gal3b
XM_043255666.1 mRNA downstream 122551 7415442 ~ 7459531 (-) True st3gal3b
XM_043255717.1 mRNA downstream 122552 7415442 ~ 7459530 (-) False st3gal3b
XM_043255708.1 mRNA downstream 122552 7415442 ~ 7459530 (-) False st3gal3b
XM_043221864.1 mRNA upstream 518076 8208651 ~ 8264576 (-) False pbx1a
XM_043221855.1 mRNA upstream 518076 8208651 ~ 8264576 (-) True pbx1a
XM_043255196.1 mRNA upstream 658064 8348639 ~ 8353246 (-) True tmem275a
XM_043262386.1 mRNA upstream 667156 8357731 ~ 8366287 (-) True kncn
XM_043263826.1 mRNA upstream 692412 8382987 ~ 8386258 (-) True cdc20
TU15133 other downstream 88238 7492206 ~ 7493844 (-) True G10170
XR_006252316.1 other downstream 569709 7009908 ~ 7012373 (-) False lhx8a
XR_006252317.1 other downstream 569709 7009912 ~ 7012373 (-) False lhx8a
TU14786 other downstream 594956 6986301 ~ 6987126 (-) True G9926
TU14741 other downstream 753080 6828490 ~ 6829002 (-) True G9894
TU15155 other upstream 93893 7784468 ~ 7785154 (-) True G10178
TU15175 other upstream 380201 8070776 ~ 8071834 (-) True G10196
TU15203 other upstream 416281 8106856 ~ 8107788 (-) True G10213
XR_006253094.1 other upstream 712752 8403327 ~ 8427903 (-) False zfyve9a
TU15605 other upstream 1496913 9187488 ~ 9188109 (-) False abca4b

Expression Profile