RNA id: XM_043260478.1


Basic Information

Item Value
RNA id XM_043260478.1
length 3267
RNA type mRNA
GC content 0.46
exon number 14
gene id stam
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14669402 ~ 14677307 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACATCTCGTTCGCATCCCGctcatatttatttagatatgcccagctgtgtgtgtgtgtgtgtgttttaactgtGTGGTATGTGTGCGCGCTCCAGCTCCGTTACCCAGAATGCACCGCTGCAGGGCTGCGAGTAAGTGATTGAGGAGGGGATCCCATCAGCAACACTAAGTGTAGTTTCTACGTTATTATGTTTATCAATTCACTTTTAACCAAGTGCTGACAGGGAGACGAACAAGAAGAGGATCGAGCGGTTTCGTCGCGTGTGTATATCTCGGCCATGCCTCTCTTCACGTCAAATCCCTTTGATCAAGATGTTGAGAAAGCGACAAGTGAGATGAACACAGCTGAGGACTGGGGCCTCATTTTAGACATTTGTGACAAGATCGGACAGTCTCGCACTGGGCCTAAAGAATGTCTGCGATCTATAATGAGAAGAGTAAATCACAAGGATCCGCATGTTGCAATGCAAGCATTGACGCTACTAGGTGCGTGTGTGTCAAACTGTGGAAAAATATTCCATTTAGAGGTTTGCTCCAGGGAATTTGCTAGTGAAGTTAGCAACGTGCTAAATAAGGGTCACCCAAAAGTGTGTGAGAAGCTGAAGGCTCTGATGGTGGAATGGGCTGAGGATTTCCGTAATGACCCCCAGCTCAGCCTCATATCGGCCATGATCAAGAACCTTAGAGAACAGGGTGTTATTTTTCCTGCAGTGGGCTCTCAGGCAGCAGAACAGGCTAAAGCCAGTCCTGCATTGGTAGCTAAAGACCCTGCAACatcaacaaacaagaaagaagaagaagacattGCTAAAGCTATCGAACTGTCTCTGAAGGACCAGCGGCAACAGCAGCAGCCTCAAGTCTCTCTGTCTGGCCTCTACCCGAGCACCAGCAGCCTCCTCACATCTCACAAGGCTGACGGCAGAAAAGTCAGGGCTATCTATGACTTTGAGGCAGCCGAGGACAACGAGCTCACCTTTAAATCAGGCGAGATCATCACCATCCTGGATGACAGTGACCCTAATTGGTGGAAGGGTGAGACGTATCAGGGTGTTGGGCTTTTTCCATCAAACTTTGTGACCGCGGACCTGACAGCAGAGCCTGAGATGAtgAAAACGGAGAAGAAGACTGTGCAGTTCAGTGAAGACGTCCAGGTAGAGACGATTGAACCCGAGCCAGAGCCTGTCTACATCGATGAGGAGAAAATGGACCAGCTACTTCAGATGATCCAGAGCGCAGATCCAACAGATGACCAGTCAGACACCTGTGAACTTCTCCAGTTGGAGGCTGCTTGCAACCAGATGGGTCCTCTCATTGATCAGAAGTTGGAGGACATTGACAGAAAACACTCAGAGCTGTCCGAGCTGAACGTGAAGGTCATGGAAGCGCTGTCTCTCTATGCTAAGCTAATGAATGAAGACCCAGTATACGCTATGTATGCCAAACTACAGAGCCAGCAATACTACATGCAGACACCAAATGCTTCCCAACAGgtgTACCCTGGCCAGTCCACTGGAGGGCAGTATGCAATGGGCAGCACAGCAGTACCGGGATATAACGTTCCAATGGAGCAGCTTTCTGCAATGAACCAAACAGGAACGCCAATGTCTGGGCAGCCGGCTCCCAGTGATGTCCATATGTACATGGGCCAGCCACCAGTCTACAGCCCGACCCCTGGCAGCATGCCTCCAACTGATATCCAGTCCTACCAGACCCCAGCCGGCGCTCCAGTGGCCATGAGCCAGACCCCTGGCTACACCGTGCCCTCCACCCAGAGTCTCCCTGCTACTGCAGACAACCAACAGACCCCTTACCCTGAGAAAGCCCTCTTATAGGGCCGCTAGAGactcatacaaacacaaacaaacaaacacacacacagtcagaaaCAAGGAAGATTCAGCTCACACAAAGAtatttccttcttttctttaagacactacaaaacaaacactgattcTGACCATGACAGGATGTGCCGATTGTTGACTACTAACAGGTGGTGTTCTCACAGAGCGCTTCTGATCCATCTTATACTTCTTTGGTCTCTTTTATAAGAACATTTTGTTGAAGGTGACGAAGAATGCCATGTTATACGGTTTATTTGACAGCtccattataataataataagtaactGGACGTTTCTTACAGGAAAACACACAGCATGCTTGTGTTGTACATACGTTTCCGTACCAGTGTAGGTCCTGATAGTCCAGTGTTCGTCAAAACAGGTCCTGAAGGGGAGGTTACgtcatcattttaatttctcatccctatgagtgtttgtgtgtgtgtgtgtgagagagagagagagagagagagtgttcaGGCCCTCAAAAGTCATCTCGCCTCTCCTCCAGAACCATGTAGCGAAACACTGCCATCATCTTGACAGTGACCCGTCACCCCAATGTTTTTAAGCTCAATTTTCAGTGTTAAGAAGATCAAtgttttttagtgcattttatttatattttgattgtcgttttgctgttttaattgACAGTACTTTAATAGAAGGATGTAATATTCTGCCTGTGTGCAGATGTGTATATACGAGAGCTCACTTCTGTCTTTAGAGCGTAACGTTCAAAGCAGCTGCTTCTTCTGTAGAAAGGGCACGTGGGAAGTTGAGGAGTAATACTACTCCACATCATGCACTTTTAATTTAccctttctttcatttcagatGTGTCcactttaaacacacatttccTTTCCCCTCGAAGAAGAACCCGAATGGCATTATCCCTGCACTCAGACCCTTTTCCATAAGTGACAGAAACacttggcttgttttttttttttttgttgtttgtttgttttttcaaactCTATGTATCCCCTGGGAACGAATGGTCACGTGTAAGTGATCTTTATCGTGGGGAATGATCAAACTAACCTCTTATTTTCCATAAGTCCTGGCAAGGGCTGAGACCGACACTAAAGAGAGCAGACTCTATTCAGTCATTTGCATCTTCTCTAAACCAAGGCAGTACCCCacttctctgtctctgtgtagCTCCAGTGTTATCAGAGTTAGTCGTTGACGTAGAGAGCATTCTGGAAAATTGGGACCATGGGCCAGTTCTAATGTAACACCTTAGCATTTGCACACGGAGATGATAATCCTTACGTCAACCTTATCCACAGGGAAAATGACTGTTTTTGGTGTATCAGTTGTATGTACCCCGTTGTTTGTATGTACTATTTTAATCATCTTAATTATTAGTATTCACAATAAAACTAGGCCAAATGTACAGCA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17661 lncRNA upstream 31597 14637589 ~ 14637805 (+) True G11918
TU17660 lncRNA upstream 32633 14636444 ~ 14636769 (+) True G11917
TU17656 lncRNA upstream 65857 14559860 ~ 14603545 (+) True G11914
XR_006252197.1 lncRNA upstream 171529 14495450 ~ 14497873 (+) True LOC122355240
TU17635 lncRNA upstream 231993 14388985 ~ 14437409 (+) True G11898
TU17912 lncRNA downstream 71910 14749217 ~ 14749651 (+) False plxdc2a
TU17944 lncRNA downstream 145854 14823161 ~ 14826945 (+) True G12135
TU17945 lncRNA downstream 149744 14827051 ~ 14829486 (+) True G12136
TU17957 lncRNA downstream 180065 14857372 ~ 14886069 (+) True G12143
TU17961 lncRNA downstream 188891 14866198 ~ 14878772 (+) False G12144
XM_043260467.1 mRNA upstream 977 14643504 ~ 14668425 (+) True colec12
XM_043261377.1 mRNA upstream 33718 14609754 ~ 14635684 (+) True yes1
XM_043219660.1 mRNA upstream 188554 14461913 ~ 14480848 (+) True lpin2
XM_043219653.1 mRNA upstream 188554 14465469 ~ 14480848 (+) False lpin2
XM_043219618.1 mRNA upstream 207689 14439752 ~ 14461713 (+) True myom1a
XM_043257043.1 mRNA downstream 1142 14678449 ~ 14681332 (+) True tmem236
XM_043260008.1 mRNA downstream 5583 14682890 ~ 14709199 (+) True cacnb2b
XM_043260016.1 mRNA downstream 5583 14682890 ~ 14709199 (+) False cacnb2b
XM_043260024.1 mRNA downstream 13880 14691187 ~ 14709199 (+) False cacnb2b
XM_043260031.1 mRNA downstream 13881 14691188 ~ 14709199 (+) False cacnb2b
TU17566 other upstream 489787 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 489787 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1796257 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1796317 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 2043015 12623823 ~ 12626387 (+) True LOC122358236
XR_006252462.1 other downstream 99015 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 99015 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 1589736 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2355012 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2684938 17362245 ~ 17367861 (+) False sppl2

Expression Profile