RNA id: XM_043260504.1


Basic Information

Item Value
RNA id XM_043260504.1
length 3922
RNA type mRNA
GC content 0.42
exon number 9
gene id asph
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12361720 ~ 12376736 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCCGGCTCAATTCACAAGGAACAAAAAGGCAGGAGACCTGCTGTTGTACAGGGGTTTGGGGTAGGATTGGGGTGAAAGACGCTCTCTTCTTCCCCACGTTTCTTGGAGGAATGGGGGAGCCGAATGCAGAGGTCAAGGTGGTGAACGAAGAAACCGAGGCCAAGCCACAACAGGCACATAAAAATGGAAAGAAGGCAGAGGTTGGAGGAGGAACCTCGTTTTTTACCTGGTTCATGGTTTTGGCTCTCTTGGGTGTCTGGACGTCTGTAGCTGTGGTGTATTTTGATCTTGTTGACTATCAAGGTGTAATCGGTAAACTCGTGTCCTATGATGCTGACGGTGATGGAGACTTTGATGTGGAAGATGCTAAAGTACTACTAGGGCTGAAAGATAAAACCACCATTGAGACCAGTGAATCAGTTGAGGGAACCCCTGCTGAACCCCTGGAAGAAGCTCCTGAATCTATCGTGGAGGAAGAAATTCAAGCCACCATAGTTGAAGAAGCAGCTCAGCCACCACTTGAACCAGAGACTGTGGAAGAGGAGCCTGTTCCCATGGAAGAAGAACCTCTGGAAGTAGAAGAAGAGCCTGCTGTTGTAGAAGACGAAGTAGCTGAGGAGGAACTAGAGGTTGAAGAGGagcaggaagttcctgaggaaGAACCAGAAGTTGTGGAGGAAGAGCCAGAGGTTACAGAGACTGTTCCAGTTGAGGAAGAGGCTGCAAAAGAGGAAGAGGTCTTTCCAGTTGAAGAACTGGTTGAGGAAGAAGTGGAGGAAACAGAGGAGGGTGCACTAGTGGAAGAAGCGGTTGAGGAAGTGTTGGAGGAAGATGCTGCATCAATAGAGGAAGTAGTAGAAGATGCACCACTGGAAGAGGCAGTAGAAGTAGTTGAAGAGGTTGCACCGGTGGAAGAAGCAGTGGAGGTTGTGTTGGAGGAAGAGACAGTAGAGGAAGCTGCACCAGAAGCTGTGGAGGAGGTTGTGCCAGTAGAAGAAGCGGTTGAGGAGCTTGAACCGGTAGAAGAAGCAGTTCAGGAGGTTATACCAGTAGAAGAAGCTGTGGAAGAGGTTCTATTGGTAGAAGAAGCTGTTGAGGAGCTTGAACAAGTAGAAGAAACTGTGGAGGAGGTTGTACCGGTAGAAGAAGCTGTGGAGGAGGTTGTACCGGTAGAAGAAGCTGTGGAGGAGGTTGTACCGGTAGAAGAAGCTGTGGAGGAGGTTGTACCGGTAGAAGAAGCTGTGGAGGAGGTTGTACCGGTAGAAGAAGCTGTGGAGGAGGTTGTACCGGTAGAAGAAGCTGTGGAGGAGGTTGTACCGGTAGAAGAAGCTGTGGAAGAGGTTGTACCGGTAGAAGAAGCTGTGGAAGAGGTTGTACCGGTAGAAGAAACGGTTGAGGAGCTTGAACCGGCAGAAGAAACGGTTGAGGAGCTTGAACCGGCAGAAGAAACAGTTGAGGAGCTTGAACCGGCAGAAGAAACAGTTGAGGAGCTTGTACCGGTAGAAGAAGCTGTAGAGGAAACTGAAACAACGGAACCAGTGGAAGAACCAGAAACACCCAAAGAGGCAGGTGAGGAATCAGAATCAGTCTCTATAGAAGAAACTGTAACAGAAGGGGAAGTTATAGAGGAAACCGAGGAGCCAGTTCAAGAAGAAGAGGAAGTACAAGACTCCACGTTGGAGGAAGCCGAGCTTgaagaagaaaatatagaagaagaagaagaagaagaagaagaagaggAGGATGTAGCTGCTGAGGAAGAGCAGCCTGAGGAGGATGCAGCAGagGAAATAAACCAAACAGAAGAACAAATTGAATTAGAGCCCACAGaaacataaaacattaggCAGTATGTAAGATGCGGAGAGGACCAGCAACACATGGCATTCCACTGGAAGTGTGCAGCTGCCAATTCCCACCATGgagttaaacaaaaacaaaacaagaacgCTAATATTTCCcttacacatttatttgaatgttttgtcaTCTTTTGTTTGGTGGTTTGACCCTTTCAAAtccctttttttgtaattacagaCAAAGCTTTCTCCCTGTTCTCTAACATAGATGTGAAGTAGCCTTTTTTGAATGATCATGGATAATAGTTTGGTTGTAGTTCCTGTCCTGTGTGTACAAACACCTTCATGTTGCTTTGTAGCTCAGATCTTCACATTCTCTTCGGCGCTGAATTAATCAGTGTCTCTCGTCATCAAATCTGATGTTTTGCTTTAATGTGAAGGTACTATGCAAAGCTGCACTGATCTTTCGCTATTTTTACCCTTAGGTTTTGTACTACCAATATGTATTGAGTCTACATTTCCAATGTTGCATATCAAGGACAAGTTTATGCTGGCAGGTTAACCAAGATAATTGCTATGTGAACTCTGTAtggagtgaatgtgtgtgtgcttgtgtgtgtgtgtgtgtgtctatttgaaaatgtatgtgaaacaatcatttttgaGCCATTTTTCTCACTAGTATGTTTTCACAGTGTTTTCTTATGTGCTTTCCAGCATACGTTCAACATTTTAGTACCTctgttgatatttttttcaatactgTAGGTGATATGCTAAGAGCTCAGagaattgtttttgcatttcttcacatttttaaactcCGATGCATAGCATTGCCCCCCCCCCACGCCAttacttatttacacttttgcCTTTTTCAGCAAGTCCTGTTTAATAGGCTCATGATTTGACAAGCTGTTTCAGGTAGACACTCCAGCTGCTGTGCAGTATGCATTAGACAGACAGTGTTGTTTAATGGGTGTCTTATGTAATAACTGGTGAAGGATGCCCACATAAATATGGAACAACCTACTTTAcacagtgtttcatttttataacaGGGTAAAGGACTTACCTAGTGTTTTCACAAGtcagtatatgtatttttttgtcatatgtCATGCACTGCCTATGTACTATAACTTCACAGTGCATTTATTCTGGCCCTTTCAACTGTTGCAGGCACATCTGTAAGAATGCAATACAATTTTGTTGTGCAGAAAAAAGATGACTGGTTATTTTCTAACTTTTATTATCATAGTAAGTCAAAAGTTGTTtgtatttactattaatgtTGTCATGGTTTTTATTATACCACAACGTAGCTTTCACCCTTGATGCAGAGTAGTTGATTAAGAAATTGAAAGCCTGATCTTTTGAAGGAAACCCAATCCTGGCTCCTGAATTGATTCACTGtggattatttttttcattgtaatgtTGTTACACTGTGGTTTTATGGGGCCTGCCAGAATAGATGATGTTTTTGTGATAGACTTTAGGAAATGCTGCAGATCTCTTCAAAACAATGATTTCATAACACATACAGTGGCTGAAATATAGTTTTTagggtttgttttttctttttctacaaCACTAAAGGGTGTTTTGGACCCCTAACACTTTTGAAGTcaatgtgaattttttaaagtggtattaattttacaaagtaaataactttttgctttctttctttctttctttcttttttttattttttttttataggattTTTAAGGATTTCTTTTATCTAGGATTTGACGTTTTAAAGtcaaattgaattaattttatgaaaGTGTTAACTTCTCAAAGCCATATGTGAAAGGTTGGATATAGCAGCCTTAGTACAGGTTGTGCTTCAAAGGACAGACATCTCACAACCAGCAATAACTCCATTTGTGAGGGGAGTGTTTCTTACTGAAATCCAGATATAAACAGAGGTTTACTCAAGACTTTCTATCCAGAGGTTTACATGAAATCCTGCTGTATAGGCTaattcattttaagttattGAGGCAATGCAATTTTAGGGAGTTTTGGGTGACTTTTCACAGATATGTAAAcaactgtaaatgttttgtttgagtGCTGCAATAAAGGTTGGGTACAACAGGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17037 lncRNA upstream 25578 12337667 ~ 12339049 (+) True G11505
TU16942 lncRNA upstream 263501 12100875 ~ 12101126 (+) True G11419
TU16629 lncRNA upstream 745764 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 751061 11609251 ~ 11613566 (+) True LOC122328936
TU17175 lncRNA downstream 168617 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 237639 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 239259 12615995 ~ 12621414 (+) True G11595
XR_006252588.1 lncRNA downstream 247093 12623829 ~ 12624952 (+) False LOC122358236
TU17208 lncRNA downstream 320350 12697086 ~ 12697294 (+) True G11618
XM_043220887.1 mRNA upstream 5565 12355888 ~ 12359062 (+) False ttpa
XM_043220880.1 mRNA upstream 5565 12355893 ~ 12359062 (+) True ttpa
XM_043220644.1 mRNA upstream 27701 12333787 ~ 12336926 (+) True lrrc42
XM_043220645.1 mRNA upstream 27701 12333787 ~ 12336926 (+) False lrrc42
XM_043219222.1 mRNA upstream 83420 12278732 ~ 12281207 (+) True rps8a
XM_043217968.1 mRNA downstream 221 12376957 ~ 12380610 (+) True impa1
XM_043223600.1 mRNA downstream 111477 12488213 ~ 12541573 (+) True cdh7a
XM_043257989.1 mRNA downstream 253295 12630031 ~ 12650410 (+) True tesk2
XM_043258015.1 mRNA downstream 277142 12653878 ~ 12656884 (+) True si:ch73-382f3.1
XM_043218997.1 mRNA downstream 281310 12658046 ~ 12660442 (+) True selenop2
XR_006247863.1 other upstream 83123 12281372 ~ 12281504 (+) True LOC122328950
XR_006247873.1 other upstream 83968 12280590 ~ 12280659 (+) True LOC122328989
XR_006247874.1 other upstream 84613 12279911 ~ 12280014 (+) True LOC122328992
XR_006252734.1 other upstream 427037 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 858897 11502402 ~ 11505730 (+) False mast3a
TU17183 other downstream 247087 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 491247 12867983 ~ 12873145 (+) False rnf152
TU17266 other downstream 491247 12867983 ~ 12873085 (+) False rnf152
TU17566 other downstream 1798628 14175364 ~ 14179615 (+) True G11854
TU17573 other downstream 1798628 14175364 ~ 14179615 (+) False G11854

Expression Profile