RNA id: XM_043261000.1


Basic Information

Item Value
RNA id XM_043261000.1
length 4465
RNA type mRNA
GC content 0.44
exon number 18
gene id pla2g4aa
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9731529 ~ 9745108 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACAAACGGTTCGTTTGAATCGCACATCTTTAGACCGCCCAGTAGTGCGATATGCGCATTCCTTTTGGCTTCCTgaagtgactttttttctgtcGGAGAGGGTCCAACATCACTGTACCACCAGCTATGATGTTTTCCGGACTGTCTTGAAATAAAGCGTCTTCCTGACCTCCATTGCTGCCAGAATGTCCTCCATAGATCCCTATCAGTACATCATAGTCGAGCATCAGTATTCTCACAGACTGAAAGTAATTGTTGTGAGAGCTGAAAATGTGACGAAAGGAGCATTTGGGGATTTATTGGATACCCCGGACCCTTATGTGGAACTGTCCATACCAACCACTCCAGAGTCAAGAAAACGAACACGCCACATAAATAACGACATCAACCCGAAGTGGAATGAAACATTTGAATTCATATTGGATCCCAATCAACCCAATGTTTTGGAGATGACACTGATGGACGCTAATTATGTCATGGACGAAACTCTGGGCACAACTAAATATTCCCTCACGAAGCTCAAAGTGGGGCATACAGAGCATGTGACCCTATCTATTGGCAAGACGACAAAAGTGTTCCTCGACTTGTTCTTAGAAGTGTGTGCGTCCACGGACTTGCGCTTCAGCATGGCACTGTGTGATCAGGAGAAACTCTTCATGCAGACCCGCAGGGACAGAGTCATGCTCGGCATCAAAAAGCTTCTCAAAATGGAAAACCCACGCTTCCTTCCAGCATCACCTAGAGAAGTTCCCACCATCGCCATTTTGGGTTCTGGAGGTGGTTTCCGTGCAATGGTTGGTTTCTCTGGTGTGATGAAGGCTCTGTATGAATCTGGGGTGCTTGACTGTGCAACTTATGTGGCAGGGCTTTCTGGATCAACATGGTATATGTCCACGCTGTACTCACACCCTGAGTTTCCAGCTAAGGGCCCAGGGGATATTAATATGGAGCTGATGAACAGGGTCAGCAGTAACCCGCTCAAACTGCTCCTGCCCCAAAATGTCAACCGCTATGTTAAAGCGCTGTGGAAGAAGAAATCGGCCGGACAGCCCGTCACCTTCACTGACATCTTCGGGATGTTGATTGGAGAGACTCTCATACCAGGGAGAATGGACACTAAACTGAGCTCCATGCAGGCAAAGATTAATGAAGGTCAGAGCCCACTTCCTCTCTTCACCTGTCTGCACGTCAAACCGGATGTCTCTGAGCTCATGTTCGCAGACTGGGTGGAGTTCAGCCCATATGAGATTGGGATGGCCAAATCCGGCACCTTCATGTCTCCTGGGCTGTTTGGGAGCAAGTTCTTCATGGGCAGCGTTGTGAAACAATATGAGGAAAACCCCCTACATTTCCTCATGGGCGTATGGGGCAGTGCTTTCTCCATCCTCTTCAACCGGGTTCTGGGGGTGAAGGAGACAACCAGCAGTAGCACAATGGAAGAGGAGCTGGAGCAAATTAAACCAGAGCATATTGTGGGCGATGATTCGGCAGATAATGAAGAGGAAACTCAGAGGGGAGGCACAGAGAGCGCCGAGGCAGAAGATGAGCGAGAGCGTCATGCCCAGGCTAGCTGGGTTCAGCGCATGTTGACCTCCATAATGGGGGACACCACCCTGTTCACCACACGCGAGGGCCGCGCCGGCAAGGTGCACAACTTCATGCTGGGACTCAACCTCAACTCTACCCTGCCCTTCTCTCCCTTCTGCGGCCTCATGAACCAGACCTCAGTGGAGGAGGAGGTTGATGCTGTTACAGATCCTGACGAGTTTGAGCGAATCTACGAGCCCCTAGatgtgaaaagtaaaaaattccACGTGGTGGACAGCGGTCTTACATTCAACCTGCCCTATCCTCTCATACTGAGGCCACAGAGAGGAGTTGACCTCATCATTTCCTTCGACTTCTCAGCCAGGCCCAGTGACTCCAGCCCTCCATTCAAAGAACTACTGTTGGCTGAAAAATGGGCCCGTATGAATAAGCTGCCGTTCCCTAAGATCGATTCGAAAGTGTTTGACCGAGAAGGTCTGAAAGAGTGCTATGTGTTCAAACCCAACAAGGGAGACAAGAGCTGTCCCACCGTCATTCATTTCGTCTTGGCCAACATCAACTTTCGGAACTTTAAAGCCCCAGGAGTTCCCAGAGACACAGACAAGGAGATAGAGATTGGCGACTTTGATATTTTTGACGATCCTGCCTCTCCCTACTCTACTTTCAACTTCCAATACTCCAACCAGGCCTTCAAGAGGCTTCATGACCTCATGGAGTTCAACACACTCAACAACATTGAGgttATAAAAGAAGCGATTAAAGACAGCATTATGCAGAGACGAGAGAACCCCTCACGCTGCTCGGTTTCCCTATCACTCAGTGAAATTGAAAACAAGAAGTTCCTGAAACGAGATACCAGCATTGCAAAATAACACACCTAACAGATAGCTGCAAAAGAGCTACACAAAAGACACCGGAGCTGGTTCTCATTCAGCTCTTTCCTGAGAATGGCTGAGCAGATTCATCAGACAAGACTGGACTGACTTTATTACAGGGTCATTTCTATGCTGCATTCCAGACAACTTTCAATTCTTCCACCTTCTACTTAAAGAGAATCACTGGAAAGGAAGCTTTTGGTCAGAATTTTTGGTCCAATTTTTTTAACCAACCAGGGTTACCTCAATTCAACACCACATTTAtcaattattctaaaataaccGTTACGAACCCCAACTggcaaataaaatgacattccGTTGGTTATTTTGAAGTACAGGTCGGCAAGTCCAAAAACCCAGGAGGTCTGGAACGGATCATGGCTGGAATGCTGGTGGGAAACAGAAGATTTCAATTCAAGTCTTTCCACCTATGACTTTGAGGAACATCTATGGAATACGTGACTCTAGTGCACAAAACctgtcataagtagcacaggtatatttatagatatagccggcaatacattgtatgggtcaaaatgattgatttatcTCTTCTATGCTAACAATCATTACGATATGCCAACCgcaaatatataaacaccatTTTTGATTAGcagtatgcattgctaaggacttaatTTTGGACAACTCAAAAGGCATTTTtcccaatatatatatatatatatatatatattttttttttttttttttttttttggcacctgcagattccagattttcaaataattatatatcagGCAAATATCGTCATATCCTAACTATCCTAATTTATGCAGATTTCAGGTGATGTATCTGAAAtctcaatttttaaaaactgaccCTTATGGTTCTGCGGTCCTGGGTCACAAAAATGAGTTGTCTATGTGGTGAAATAAACACTGCACTCTCATTGGTCGCTAAAAGCATTATCAAATTagccaaaatatctaataaacaaacacaatggGCAGGGGACGTGAAGAACTTTACAACAATCAGGACCGTCTCCCAACAACTGTTCTTGAATCCCAACGTGCTTACAAATCTGTCTGCGTACTTCTCTACGGGTTTCAAGGAACCAAGTACCGGCAGATTTGTTTTCACTTGACATTTTAGCAGTAAATACTTTTCTTCGAGTAATTGACAGTCTCGGCGGCGGCCCGAGCCTCGGGACACGCTGTTCCTCGTGTGTTTTACCGATGTGATAAGAAAACGATTCATGCTCTCTGTTCAGTTCTACCGTGACGCACCTTATGACCGCTAGATGGTTAGCCATGCCTTCAGGACAGGATTCATCTCATATTTTAGCGAAAGATTCATAGCTTAGGAACTGGATTCAGCTGcttctatttattttgcttacAAATGTCGTCTCCTGCCCCAAGGGGTGAAAGGTAAAATGCCATCTTCCACCTCCCACGCAGGACTCCACCTTCTTATGAGGCATCAGGAACAATGACACGATGGGACATGTTCTCGATCTCGTTTCCTGTCTGTATCGCATTCAGCCTATTTGTGGCACATATAGATCTAACTTCGCACATTATCATTCCTCTGGTTTGCATACTTCATTATCGATTTTATTGTATAcaagattatttatttgtatgcttACCGTGCAGTTGCTGtgctttaaaattcattttacagtttgtgCGTCCCAGAATCAagcattttaagtaaatgtcaATTGGAAAAAAAGTGCTTAAAGCATAAAACTGAACTGAGGTCAGTAGGATAAAGGTGGCAGGTAGATACCAGAAAGACAGgttgtgtgtttaaaatagACCTAAGAATTAGAGTGCACTTTAGGTCCAGAATAAATGTCTATTAGTGCACATTCCTTGCTGTTTGTTGTCTGTACAGGTACACATCGACGTAATCATTGTGAATGATATAGATTCTTTTAAAGCGGgcatgtactgtatttttgtatgattCATGTATACACAATAGTATGTCATGTACATTTAAGTAACGTTACCGGCCTGTGTGGTGTTGtgcataaacataataaaaaggaTATTCATGCAGA

Function

GO:

id name namespace
GO:0001541 ovarian follicle development biological_process
GO:0009395 phospholipid catabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0004622 lysophospholipase activity molecular_function

KEGG:

id description
K16342 PLA2G4, CPLA2; cytosolic phospholipase A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15761 lncRNA upstream 127686 9602366 ~ 9603843 (+) True G10604
TU15733 lncRNA upstream 154123 9577171 ~ 9577406 (+) True G10581
TU15718 lncRNA upstream 158736 9486177 ~ 9572793 (+) True G10571
TU15720 lncRNA upstream 221396 9486177 ~ 9510133 (+) False G10571
TU15704 lncRNA upstream 276784 9454366 ~ 9454745 (+) True G10557
TU15857 lncRNA downstream 80507 9825615 ~ 9826220 (+) True G10674
TU15953 lncRNA downstream 244035 9989143 ~ 10010746 (+) True G10738
TU15974 lncRNA downstream 247676 9992784 ~ 9993395 (+) True G10749
TU15979 lncRNA downstream 266829 10011937 ~ 10014366 (+) True G10752
TU15980 lncRNA downstream 269451 10014559 ~ 10015822 (+) True G10753
XM_043261048.1 mRNA upstream 21678 9702238 ~ 9709851 (+) True odr4
XM_043261023.1 mRNA upstream 49560 9676255 ~ 9681969 (+) True prg4a
XM_043261034.1 mRNA upstream 49560 9676255 ~ 9681969 (+) False prg4a
XM_043224115.1 mRNA upstream 59012 9658386 ~ 9672517 (+) True rxrga
XM_043256420.1 mRNA upstream 101334 9624718 ~ 9630195 (+) True olfml2bb
XM_043261072.1 mRNA downstream 1462 9746570 ~ 9751211 (+) False arpc5a
XM_043261108.1 mRNA downstream 13071 9758179 ~ 9766326 (+) True ivns1abpb
XM_043258980.1 mRNA downstream 36657 9781765 ~ 9805690 (+) True niban1b
XM_043253543.1 mRNA downstream 106177 9851285 ~ 9856761 (+) True prrx1a
XM_043223563.1 mRNA downstream 166520 9911628 ~ 9916861 (+) False znf414
XR_006252402.1 other upstream 559614 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1623752 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 2149144 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2744410 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 3039154 6691668 ~ 6692375 (+) True G9889
TU15832 other downstream 1486 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 166520 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 166520 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 966022 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1495018 11240126 ~ 11256764 (+) False kcnh2a

Expression Profile