RNA id: XM_043261352.1


Basic Information

Item Value
RNA id XM_043261352.1
length 3346
RNA type mRNA
GC content 0.48
exon number 14
gene id ranbp9
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14838422 ~ 14849429 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAATCAGATTGCTGGATTTCAcactaacaacaaacaaaagatcGGGGTTCCCTCTGCTGCTGTCTTTCTGCTCCTTTTACCCTATTTAGTCTGTCCGATCGGTTGGATGTCGTCTTAAATAACAAGGATCAACTTTCTGGATGTCCGTTATGTTTTTGTAAGCTGCCGTTTCGCTGTATTGGCGTGATTAATTCTCTCTAGCGTCTTGCTAACTCTACCAGAGAGGCTGTTTGCGGGCTAATCGCAGTTAGCTGGCTGGCTAGCCGTCCGATCCGAATAAAGCAAGCCCGAAATCTCAGCAGCTCTTCTCCTGTGGTGTCTGACAGTGGTCGCTTCAGCCACTGGACACTGTTAGAAAGCTGTCCAGCTAAATATAGCTGGCAAGCTGTTGGTATCGGCGGCAGGAATCGGATCGCGATGTCAGGACCGTCATCGGGCTGTGGGTTTCTGATGTCGGTTGTCGTTCACGGAGACTTGGCTCTCAACGAGCAGGAAAAAGAGCTCAACCAGCGGCTTAGACGCCTTTACCCGGCCGTCAACGAGCAGGAGACCCCGCTCCCCAGATCCTGGAGCCCCAAAGACAAATTCAGCTACATCGGCCTGTCTCAAAACAACCTCCGGGTGCATTATAAAGGTCATGGAAAGACTCCAAAAGATGCGGCGTCTGTCCGTGCAACACACCCTATTCCAGCTGCCTGCGGGGTCTATTACTTTGAGGTGAAAATAATCAGTAAAGGACGAGATGGCTACATGGGGATTGGCCTGTCCGCTCAAGGTGTCAACATGAACAGACTTCCagGTTGGGACAAGCACTCCTATGGATATCATGGAGACGATGGACACTCCTTCTGCTCATCTGGCACTGGCCAGCCCTATGGTCCAACATTCACAACAGGCGATGTGATCGGCTGCTGTGTGAACCTCATCAACAATACCTGTTTCTACACAAAAAATGGTCACAGTCTAGggATAGCTTTTACAGATTTACCGCCCAACCTGTATCCCACAGTGGGTCTGCAGACCCCAGGGGAGGTCGTGGACGCCAATTTTGGGCAGCATCCGTTCGTGTTTGATATTGAGGATTACATGCGTGAATGGAGAACCAAGATCCAAGCCCAGATTGACCGTTTCCCCATCggggagagagaaggagaatgGCAGGCCATGATTCAGAAAATGGTGGCCTCCTATCTGGTTCACCACAGCTACTGTGCCACCGCTGAGGCCTTTGCCAAATCAACTGACCAGGCCGTACACGAGGAACTTGCTTCTATCAAAAATAGACAGAAGATCCAGAAGCTGGTCTTATCTGGCAGAATGGGAGAGGCTATAGAGACCACTCAACAGCTTTACCCAAGCCTGTTAGAGAGAAACCCAGACCTCCTGTTTATGTTGAAaGTCAGGCAGTTCATTGAGATGGTGAACGGCACTGACAGTGAGGTCAGGTGTCTCGGTGGGAGGAGCCCTAAGTCACAGGATAGCTACCCAGGCTCCCCCCGTCTCTTCAACAGCCCTGTTCACAAAGCCAGCAGCTCCCAGACCTACCAGACAGGTTTTGATAGTAATTACTGTAATGGAGTTTCATCAAGTAAAGGCCACACCTCGGCCCATAGTCACAAGTCATGTCCGCCTACCATGCCAAGCCCTGAGCTTGGCGTCCTGAACGGCACTCGGAGCCAGCAGACCAGCGTTAGtgcTGAGGTGGAGATGGAGGTGGATCACTTCTCAAACGGAGTGTCTGAATCCTCTTCAAATGGATTTCTGAATGGCAGCTCTACTCACGGGATAGACTTGGAGGAATGCGATGGAGATATGGAGGTGGATAGTGCTCAGACTAAGAGGCAGTTGTGTGGAGGGAGCCAGGCAGCCATTGAGAGGATGATTCAGTTCGGCCGAGAGCTACAGAGCATGAGTGAACACTTGCGTCGTGAGAGGGGCAAAAACTCAGCCAATAAGAAGATGCTCAAGGATGCATTCAGTTTGCTGGCATATTCAGATCCATGGAATAGCCCTGTGGGCTACCAGCTAGACTCCATCCAGAGAGAGCCTGTCTGCTCAACACTCAACAGTGCAATATTAGAAACTCATAACCTGCCAAAGCAGCCTCCCTTGGCGCTCGCCGTTGGCCAGGCAGCTCAGTGTCTGTCCCTCATGGCTCGCACAGGCAGCGGATCCTGCGCCTTCGCATCAGTGGATGACTACCTGCACTAACCCCGGgagaattattcctttaaacgACCACGTGAAAGAGGCCCACATCATCCCAGTCCATCCCAgactcccaaaaaaaaaaaaaaaaaaaaaaaaacgaaaaaaaaaaaaaaactggggcCAGCTTTGAAACCACGGCCTGATGAACTGAGCCTCCACATGGCCAGACCCATCCTGGCTCTCTGACAAGACTGGATCCTCTTCACCCGGGCCTAAACCGGGCCTAAAGACACATTAGGAAGAGGGCTTCTAAAAAGTCAGACAAAATCCCCAATCATTAtggtctttattttttatttttattttttttccctttgtcttttttattttgggggagGGGAGGAGGTGTTGGGCGGGGGTGCGGCAGGCTCTGATTGTTTGTTTCCTAATTTACAAGGCATGAGGAAATTATTATGacataattaatgttattatcaGTAAACTTGCATATAAGATATATTTGTTCTTGGTTGAAAGCTGGCAGAGTGAGCGAGACCGAATAACTATGGTCCCACCGCGGCAACACCCTGCTATTTTCAGGTCTCAGCTTGTGTactttaccatttaaaaaagaaaaaaaaaaaaatattgaaattatattaacaCGAGGAGTGGAACATTTAGTTatcttacagtaaaaaaaaaacaaaacttaaaaccCAGAAGACCTAACACTGCTGGAGTCATCCTTAGTGGTGGTATTTAGTATAGAGCGTTAGTGTGAGCTGTATGAGTTATGCCCTTTTTTTTGTGCAAGCGCACCCTCCCTCTGCCAACTGCACAGCAGGATTGATGCAATGTTCGGACACTTTGATTTGTAATTGTATTGATGTATGGTCTTTTCATCCACCCCCATCTCTTACTCCATCTTTTAAAAAGTCCATATTCAGGCATTCTCTCATCATCGTTGCCTGcactgtgtttttgtgcagtttGGATGTGCGACAGGAACATGGTGAAATTAAGGTCATATCCAGTCCCGGAGACGCAAGCCTTCTCCATTGTTTTTTCTCCTCTTGTTTACCAGTCAATCCCTCGGATCATCAGTACTTTTAAAACAAGGAGAATGGTACAGTATTGTCATCGACACTGTCTTATCATTTTCAGTAATAAAACGTAAATACCCAGTTGAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23334 RANBP9_10, RANBPM; Ran-binding protein 9/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17945 lncRNA upstream 8936 14827051 ~ 14829486 (+) True G12136
TU17944 lncRNA upstream 11477 14823161 ~ 14826945 (+) True G12135
TU17912 lncRNA upstream 88771 14749217 ~ 14749651 (+) False plxdc2a
TU17661 lncRNA upstream 200617 14637589 ~ 14637805 (+) True G11918
TU17660 lncRNA upstream 201653 14636444 ~ 14636769 (+) True G11917
TU17957 lncRNA downstream 7943 14857372 ~ 14886069 (+) True G12143
TU17961 lncRNA downstream 16769 14866198 ~ 14878772 (+) False G12144
TU17962 lncRNA downstream 16769 14866198 ~ 14869731 (+) True G12144
XR_006246966.1 lncRNA downstream 89760 14939189 ~ 14982818 (+) False LOC122323195
XR_006246965.1 lncRNA downstream 89761 14939190 ~ 14982818 (+) False LOC122323195
XM_043253296.1 mRNA upstream 1470 14836159 ~ 14836952 (+) True rnf182
XM_043256726.1 mRNA upstream 59587 14776322 ~ 14778835 (+) True ackr4a
XM_043256760.1 mRNA upstream 62926 14773824 ~ 14775496 (+) False si:ch211-106h4.12
XM_043256751.1 mRNA upstream 62926 14773825 ~ 14775496 (+) True si:ch211-106h4.12
XM_043256772.1 mRNA upstream 85261 14746107 ~ 14753161 (+) True plxdc2a
XM_043261364.1 mRNA downstream 3271 14852700 ~ 14855171 (+) True epdr1
XM_043261298.1 mRNA downstream 6400 14855829 ~ 14863508 (+) True stard3nl
XM_043217860.1 mRNA downstream 61446 14910875 ~ 14915309 (+) False otulinb
XM_043217868.1 mRNA downstream 61472 14910901 ~ 14915309 (+) False otulinb
XM_043217883.1 mRNA downstream 61490 14910919 ~ 14915309 (+) False otulinb
XR_006252462.1 other upstream 55445 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 55718 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 658807 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 658807 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1965277 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1417614 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2182890 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2512816 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2717412 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2757823 17607252 ~ 17608092 (+) True G13111

Expression Profile