RNA id: XM_043261364.1


Basic Information

Item Value
RNA id XM_043261364.1
length 1408
RNA type mRNA
GC content 0.46
exon number 3
gene id epdr1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14852700 ~ 14855171 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACAAATGATacgttttagtattttaatttttaataaattatgtgttattgttaggAATACGTGTTAGTGATCAAAAAGCCCTCGTGATATTTTTTCAGCTGGCggagaaataattaaataggtTTGTCGTGCGATTGGGTACATCTGACCAATCAGTGTTTCCGACGTGTTTGCGACATGGATGCTGCTATATTTTGTCGCTTTTGGATGAGGCACCAGCGCAGTCGAGCGCAGACGCTTTTTGGGGGGgtgaaaaaaaatcctcttgTTCACCGACAGGCcttgaatattatatatgaatactTAAATCTCATGCAGCTAGAGCTTTACCGGCAGACATGTCAggctttgttgtttttgcactaGCGCTCTCATTATCTGCGATGCTGCCTTGTCTGGGCTCTCCTCCGCGTCCAGGAGCTGCAGCGCCGAAGCCCTGTCCGGCGCCGTTACAGTGGGAGGGTCGCACCGTCGAGTACGATCACGGCACCGGACGAAACACACGGGCGGCGGTCTCCTACGACGCGCAGAATCAGAGAGTTAGGGTCCTGGAGCAGAAGACGGGACACACACCATGTAAGAAGTTCTTTGAGTACATCTACTTATTCAAAAGTGGAGTGCTGTTCCAAATTGAGGAGATTACTAAGCAGTGTGCAAAGATCGCTCTGACGGAGGCCTGGGACCCGTATGACATTCCCCTGAACTCCACGTACGAGGACCAGTACTTCATTGGAGGACCCGGAGACATGATCGAGGTCCAAGAGTGGTCTGATCGGAAACCAGCTCGCAAAAATGAAGCTTGGGTTGGCGTGTACACCCTGAAGGACTGCTATCCCGTACAGGAGACATACGCCAAAAACAGCAGCGTGACCACATCCACTCGCTTCTTCGACCTTCAGCTGGGCATTAGTGACCCGGGGGTGTTCGACCCACCCAGTACCTGCCAGTCGGCTCTGACTGAGAAGATGACGTCCGACTGCTGAAGACACGGCTTGGCTTTACATGCACAATATACATTAACCACGATACAGTAGGCTTACATAAACGGCTTCtaaataaatgacagtaaaagaGCACATGAAATGAGCGCAGGTACTGTTAAATATAATCCGCTTTGAAATGATCAATGTTTTAAGTTTAGTAGTTCTTGTTGATTTATGGTGTGAAGTGTGCCTCATTTTATTAAAGCCTCATTTTTAATATGCCACATTTTGGGCAAATTACCACTGTGTGTTGTGCTGGTCTAGGATGGACTGATGTGGTGCTTGATTTTTCGTTTGACAGTCAATATTCTGTTTGTCtgatcattgttttatttatcattttagacGATTCACAGTGTGGACGCTTACAGTTTAAGTTACAGAAACCTCTGGAATTGTGATTTCAATAAAATGGTTTACCtca

Function

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17945 lncRNA upstream 23214 14827051 ~ 14829486 (+) True G12136
TU17944 lncRNA upstream 25755 14823161 ~ 14826945 (+) True G12135
TU17912 lncRNA upstream 103049 14749217 ~ 14749651 (+) False plxdc2a
TU17661 lncRNA upstream 214895 14637589 ~ 14637805 (+) True G11918
TU17660 lncRNA upstream 215931 14636444 ~ 14636769 (+) True G11917
TU17957 lncRNA downstream 2201 14857372 ~ 14886069 (+) True G12143
TU17961 lncRNA downstream 11027 14866198 ~ 14878772 (+) False G12144
TU17962 lncRNA downstream 11027 14866198 ~ 14869731 (+) True G12144
XR_006246966.1 lncRNA downstream 84018 14939189 ~ 14982818 (+) False LOC122323195
XR_006246965.1 lncRNA downstream 84019 14939190 ~ 14982818 (+) False LOC122323195
XM_043261352.1 mRNA upstream 3271 14838422 ~ 14849429 (+) True ranbp9
XM_043253296.1 mRNA upstream 15748 14836159 ~ 14836952 (+) True rnf182
XM_043256726.1 mRNA upstream 73865 14776322 ~ 14778835 (+) True ackr4a
XM_043256760.1 mRNA upstream 77204 14773824 ~ 14775496 (+) False si:ch211-106h4.12
XM_043256751.1 mRNA upstream 77204 14773825 ~ 14775496 (+) True si:ch211-106h4.12
XM_043261298.1 mRNA downstream 658 14855829 ~ 14863508 (+) True stard3nl
XM_043217860.1 mRNA downstream 55704 14910875 ~ 14915309 (+) False otulinb
XM_043217868.1 mRNA downstream 55730 14910901 ~ 14915309 (+) False otulinb
XM_043217883.1 mRNA downstream 55748 14910919 ~ 14915309 (+) False otulinb
XM_043217876.1 mRNA downstream 55813 14910984 ~ 14915309 (+) True otulinb
XR_006252462.1 other upstream 69723 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 69996 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 673085 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 673085 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1979555 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1411872 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2177148 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2507074 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2711670 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2752081 17607252 ~ 17608092 (+) True G13111

Expression Profile