RNA id: XM_043261653.1


Basic Information

Item Value
RNA id XM_043261653.1
length 6438
RNA type mRNA
GC content 0.50
exon number 25
gene id pard3ab
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20975539 ~ 21044413 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGTTGCTCCTGAACCGACTGATCACGGCGCGGTTCCCGTACGCAGATCCCAAACACTAAACAGGTGGTCATACGCCGCCACACAGCGCCCGCCGCGATGAAACGGAACGGGTACCGATCGTAACTTACACCGAGCCGCCGAGGTGCCGAACCAAAGATTATTAATGATCTGGACACCAGGGCACGGGTGCCTTTGATCCCGAGTTTCCCTTGGAGTCGGGAAGGTCTGAGGAGAGTTGGAGCTATGAAAGTGACGGTGTGTTTTGGAAGAACTCGGGTCGTGGTTCCGTGCGGAGATGGAAACATTAAAGTGCACTCGCTCGTCCAGCAGGCCGCGATGCGGTACAGGAGAGCGATCGCCAAGggtgAAGAGTACTGGGTTCAGGTGTACCGGCTGGAACACGGTGATGGAGGAATTCTTGACCTCGATGACGTCTTGTGTGATGTGGCCGATGACAAAGACCGATTGGTGGCAATATTTGATGAACAAGAGCCTCATGTTGGAGGTGACGGCACCAGCGCGAGTTCAACGGGCACCCAGTCGCCTGAGCTCTTCTCTGGAGAGCCGTCCACCTCCACCCCACTGTCTGCCTTCCAACCGTACCTGCCCCACAGCGAGATCGAGGTCACCACATCCACGCTTCGAACCAATATGCCGTTGCATGTTCGTCGCAGTAGCGATCCAGCGTTGTTGAACCTGACAGCGATGTCGTTCTCTGAGCCTGGTTCACAACCCGAAGAACCTTCCAGAAAAAATCCCACGCGCTGGTCTACAACCGCCGGCTTCCTGAAACCACGTTTCTCCACCGGCACTAACAGCCTGGAGAGGAAGggtAGAGGTGTTGACACATATCGTAGTCTTCCTCGTGACGCAGGGCAGTGGTCAAATCAGAAAGAGTTTCAGCGTGAAAAGGCTCGGTCCTCACTCAGCGCCAATCATCCCATGGTGGACCGCTGGCTGGAGCGACAGGAACAGGATGAGGAGGAGAACGGTAGGATTGAGCCAGTGGGACGTGCGGATACATGTTTAGATCACATGGGAGTGAGATCGCTGGATTTGATTTGCAGtgatattgtgaaattgGTTGAAGTGTCCAATGATGGAGGACCTCTCGGTATCCACGTGGTGCCTTTCAGCGGACGTGACCGCAGgacgttgggtcTGCTGGTGAAGCGTCTGGAGCGTGGAGGGAAGGCTGATGTCCAGGGTTTGTTTCAGGAGAATGACTGCATCATTCGGATCAACAACGGAGACCTGCGGAATGTCAGATTTGAGCAAGCTCAGAACATGTTTCGCCAGGCAATGCGTTCACCCGTCATCCTATTCCATGTGGTACCATCCACCATGAGATCCCAGTATGAGCAGATTTCCCATAATGAGCACAACCCTAGAGCAACCATTGACCTTTCTGGACGTTTCAGCCCTGACTCCCTCACCAATGATCCTGTTGGTCTGGATCACACCTCTCACCGATTGGCACAACACAGGCCACACCCACCGAATAACCATTTGGACGCCAGCTCTCCCATCCATCATCCTGTTGGGCAATCAGGGAAACCTCCATCAGGTCACGCCTCCTCTCCCCAAAGAGGATTAAGCCCCGCCCCCACATCCGGCTTCACCAAGAAAGTTGGGCGGAGACTTGGAATCCAGCTTAGAAAAGGGCCTGAAGGTCTCGGGTTCAGCATCACTTCAAGAGACGTCCCTCTTGGAGGCTCTGCCCCTATTTACGTGAAGAACATTCTGCCAAGAGGAGCTGCCATACAAGACGGGAGATTGAAAGCTGGGGATAGATTGCTAGagGTCAATGGGGTGGATCTCAATGGGCGTGGCCAGGAGGAGGTGGTTTCTCTGCTGAGGGCGACGCCCATGGGCGGGACTGTGACTCTTCTGGTATTGAGGCAGGAGGACACCTTTCTACCCAGAGAGATGAACACAGAACCAGCAATGCAGAACACAAGAGAATGGAAGGTGGAAGAAGAGGAGTTGGTCTTAACTCCAGACGGAACGCGTGAGTTTCTGACGCTGGAAGTGCCTCTCAGTGATTCTGGCTCGGCGGGATTAGGAGTCAGTGTCAAGGGTAACAGGTCAAAGGAGAGCCATGCTGACTTGGGCATCTTCGTCAAGTCTATTATTAACGGAGGAGCAGCATGCAAGGACGGTAGGCTGCGAGTCAACGATCAGCTAATCGCAGTCAATGGGGAGTCTCTGTTAGGGAAGACAAACCAGGACGCCATGGAAACGCTGCGCAAGTCCATGTCAACGGAGGGCAACAAGCGAGGGATGATTCAGCTGATTGTGGCAAGACGAATCAACAAGCGCCTTGAGGGTGAGAGCCGAAGCAGTCCTCGAGGATTAGAGCGGACCCTGAGCCCGTCTCCTGATGACCATGAGCGGCGGATCTCACACTCGCTATATGGAATCGAGGGGCTTGATGACAACCTGAGGCCGCAAGCCAACACAAATAATCGTAAAATAAATCATTATCAGCTCTCTCCGACGGTGAACATGCCTCAGGATGACATGGTCATAATTGAAGACGACAGGCCACATGTTCTTCCCACCCAGCTGTCTGACCAATCGTCATCCAGTTCTCATGATGACATGGGCTTCGCTGTGGAGACGCCTCCGCCGCCACCCTGGGACCAAGAGCTTCCCGACAGCACTTCCAATGCTAATGACGAGGGGGTGTTTCAGAGGGAAGGCTTTGGCAGGCAAAGCATGTCTGAGAAACGCACCAAGCAGTATGGAGACGCAAGCCAGCTCGACATTATCAAGACCCGCAAGTCCAAGAGCATGGACCTAGGCTCTTCCTCACATGATGTTGGCCCGTCTCTCGGCCTAAAGAAGTCCAGCTCTCTGGAAAGTTTACAGACCGCTGTTGCCGAGGTGACGCTCAACGGCGACATGCCTTTTCACCGGCCGCGGCCACGCATCATACGGGGCCGGGGCTGCAACGAGAGCTTCCGTGCCGCGATTGACAAATCGTACGACAGGCCAACAGCCaatgaggatgaagaggagtGCATGGACACATtGGAGGAGGACACGGAAGGAAGCTCTCGATCGGGGAGGGATTCGGTTTCCACGGTAGCTGATCTCACTCCGCTTCCCGTCACCGAGCAACAGCTGATCAATGGCAACCAACCTCAAAACgacaagaagaaagaaaaagggggGAAGGACAAAAAGAagccagagaaagagaagggTAAAACAAAGAAAGGAATGCTCAAGGGTCTTGGAGATATGTTCAGgttCGGGAAGTACCGTAAGGATGAGCGTCTGGATGGTCCAAAGTGGAAGGCAGAGGAAACTCATGCATCAGAGGAAGAGACGCGCAGAATGAGACAAGAACAAGAGAGGATCCAAGCTAAAACGCGAGAGATTCGTCAGCGTCAGGCCAGAGAGCGAGACTATGCGGAGATCCAAGACTTCAGCCGCTCGACCCTGACCTCACTTCCTCCTGAAGAGCCCCCATATGCTGGCATCGGCTCACTGGAACACGGCGGGTACCATCGGATCCACACGCCTCCGGACTCaccgtacacacacaaacagaacgCCCGCAATGGACTCCCCTCCACAACAGACAGGCTGACGCCCAGCAACCACGACCGAATCCAGCGATTACGCCAGGAGTTCCAGCAGGTCCGGCAGGAAGAGGCGGAGCCAGATGATCGCCACCGCTCCTACAGCTTGGAACAGCCCTGGTCCAACTGCAGCCCGCAGACATCATCTGGCCGTCATTCAGTGTCTGTGGAGGTGCAGTTACAGAGGCAGGAAGCCAGAGATGCTTTCACACATGCTCAGAGACAGTACAGCTCTCTGCCACgCCACCCTCGCAAGACACCCACCCCAGCGTCAGAAAGCGAGTGGGAGAGGACGTGTCCACCTGGAGACGGTTTCCAGGCAGCAAAAGACAGCGGCCGTTACTCCAGCTACCAGGGACCTCGTTCTGTCCCGCGCACCGTTCCTCGTCCCGGCTGCAGGAATGGCCTTTCCGCTCCCCCAGGATCCAGCAGTTCCTCTGTGGGTGGTGGCTACAATGCTCGTGTCCTCCTAGAGGCCCAGGAGCTCCTCCGACAGGAACAGAGACGCAGGGAACAGGAAATGAAAGGAAGAGGCCCGTCAATGCGTTTGGACTACGAATCCCAGGATTCCAAAGGACCCCTCAGACAGGACGTCCCACCTTCCCCCTCCCAGGTTGTTCGGCTCAGCCGCATACACACACCTGAGAAAGCACGCCCGTTTTTATCTTgaggaaataaacatttttcctgtttttcaaAGAGGCAAAAGGTACACAGATACAAATTTGTGTGCCAGTTGTACACAGACTCCCAGAGTGCCTTTTCTTTGAGGTCGCAGTGGTTACGCCCAATCTAACAGCTCATTGGTGCGTCTAGAGGCAAGAAGCCTCTTGATTCGCTGCGAAGACCTTCAAGCTCTGACAATCAGCCTGACACTGACCTGTTCCTCTGTACAACCACGTAGAACTTGATCAAAATGAGCAGCTTCATGCTTTGCACAGGTTATAATGAAGTTTTGTGAAgtagagctttttttttttttactaagatTTATCAGATGAATTCTTACACATCAGGTAAAGTTGTCAGTTAAACGTGTATTTGATGTCATTAGTAGGGAAAAAAGTGGAACCGAGTACAGGTGGCCAGCAAACCTAGTGTCACCACTGGATGTAGTCACATGTTTAAAGAACTCGACAAATCAAGGTACAGAACACACAGTCAGTGTGAAGGACTCCTGGGAATCCAGTGAAAAGAGAAAATCCCAAAAATGCAATGGAAAAGAAGAAGGAAAGGAAATGGGGTCATAGATAGCAGGTCATTAATTGATGCTCCtcattaaattttcaaagctctttcacacacagacacagaaccCACGACCCACTGCTGCctgccaggtgtgtgtgtgtgcgcgtgagttCCTGTCTCCCAGATGACCCACACTGAATTTTTCATCACACACACCAGCTGCCCCTGTATTGACAGGCCACAGCACTGTGTGAAAGTTCAGACAAAAAGATTGTCTTCTGTTTCCCTTAAACGTgtgtaaatgcacacacatacggAGGCTGTATTTGAAATACCACACTAGCACTACCACGTCTGTCTgttcataaaatatgtaaaaaatcgTTTTTTCACGATCATACACATGTAAGGAAAGTGTGAGCTTAAAAAtagagtatataaaatataattagggagaaagagagagtgagattaAAGATCTATATACAcaatagtcaacatttgaagtggatcaaaaccttgtcctaaaaccaaaatacattCAACTTTGGTTACCATTTCCTTTACCttaaatgcttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaatatgagagagagagagagagatgttcgCAGTGTGTTAAAATTCCATTACAAAAAACAGCTATGCTCAATTCTCATATGGACAGATTGATGGACTTTATTGATTAAGTAAAATTCATTTAGCTCTGCCCCTAACAGCTGCCGAGATGGTGAATCTACACGACACTTTGAGATCTCAGACTAGAACTTTGAGTCTCGGAAGTTCTGGGCTTTGAATCAAGAGCTCCCGTTGAGCTGAGACTGGAGTGTAAGAGGCTAGGTCAGCGCtccgtgtgtgtgcgtgtgtgtacgtGCGCGGGGGCAGTGCCATATGAGCCAGCCGATGCTCGTTTGACACATAACAGTGGGACACATGGTGCGCAACACACTCTACTGCCCAGGCACAGATGGTTGGGTGCGcttggggtgtgtgtgtgtgtgagagaggataTCAAGATAATAACATGAAAAGAGCTTCAGTACGACATGACTAAACAATCAAGACATTTCGGTTTTTATTGTCTTCTTTGTTCCTCCGTATCTAGTATGGAAATTAGCTTGTGATCTTGCCCTGCTCATCCTGTTTTGTACATTTGCCTCCTTTTTAACCTTTTCAAATGAACGAAACCTCTTTTGcacctttttaaatgtcatatttctaGATTGTAACAATTTTAATGAAGAAGCGTTAAAAAATGTGGCGCCTTTTTTCCACAgattcttttatttatgtttgtatcCTAGCAACAGTCTCCATATGCTGTTCAaaaaaggtcagaggtcaagagCGGGCAGAGatatggagtttccagaggattcgtgtctgattttttttctgtgtgtgtgtgtgtgtgttagtttgtTTACAGGACTCTGTACAGGGTTTTTGGCTTTCTGTTTCTGCCTTTGTGTCtgttattttgtgttgtttatacGCTGTTCAGAAATCGGTGATGTTTAGAAACAcagcagctgtttggactgtACAAAACTCTTGTAAAATAAAGGAAGGGGATGCTCTTCTGTTTGCGGTA

Function

GO:

id name namespace
GO:0021535 cell migration in hindbrain biological_process
GO:0043010 camera-type eye development biological_process
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0007405 neuroblast proliferation biological_process
GO:0051660 establishment of centrosome localization biological_process
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20610 lncRNA upstream 9312 20961693 ~ 20966228 (+) True G13976
TU20620 lncRNA upstream 18404 20955935 ~ 20957136 (+) True G13980
TU20595 lncRNA upstream 29274 20899564 ~ 20946266 (+) True G13964
TU20511 lncRNA upstream 357880 20616158 ~ 20617660 (+) True G13909
TU20456 lncRNA upstream 380447 20591718 ~ 20595093 (+) True G13863
TU20640 lncRNA downstream 103767 21148180 ~ 21148512 (+) True G13992
TU20641 lncRNA downstream 104808 21149221 ~ 21150007 (+) True G13993
TU20642 lncRNA downstream 106245 21150658 ~ 21151136 (+) True G13994
TU20644 lncRNA downstream 107690 21152103 ~ 21153782 (+) True G13995
TU20627 lncRNA downstream 121675 21166088 ~ 21168887 (+) True G13983
XM_043263535.1 mRNA upstream 87996 20854977 ~ 20887544 (+) True efr3a
XM_043263525.1 mRNA upstream 87996 20854977 ~ 20887544 (+) False efr3a
XM_043263517.1 mRNA upstream 87996 20859022 ~ 20887544 (+) False efr3a
XM_043257567.1 mRNA upstream 183682 20778714 ~ 20791858 (+) True basp1
XM_043257497.1 mRNA upstream 197487 20772536 ~ 20778053 (+) True LOC122357864
XM_043263556.1 mRNA downstream 28672 21073085 ~ 21095565 (+) True LOC122362210
XM_043259199.1 mRNA downstream 55272 21099685 ~ 21115999 (+) True LOC122359068
XM_043259209.1 mRNA downstream 55274 21099687 ~ 21115999 (+) False LOC122359068
XM_043255915.1 mRNA downstream 72056 21116469 ~ 21122754 (+) False itgb1b.2
XM_043255911.1 mRNA downstream 72057 21116470 ~ 21122754 (+) True itgb1b.2
TU20478 other upstream 471317 20493442 ~ 20504223 (+) False LOC122326305
TU20479 other upstream 490322 20481664 ~ 20485218 (+) True G13882
XR_006247459.1 other upstream 502924 20467268 ~ 20472616 (+) False gbp2
XR_006247815.1 other upstream 546195 20416203 ~ 20429345 (+) False crlf1a
TU19377 other upstream 3158776 17784179 ~ 17816764 (+) True G13137
TU20649 other downstream 119529 21163942 ~ 21164822 (+) True G13998
TU20650 other downstream 119884 21164297 ~ 21164822 (+) False G13998
TU21005 other downstream 262994 21307407 ~ 21361708 (+) False G14211
TU21007 other downstream 293269 21337682 ~ 21361708 (+) True G14211
TU21008 other downstream 293269 21337682 ~ 21361708 (+) False G14211

Expression Profile