RNA id: XM_043262126.1


Basic Information

Item Value
RNA id XM_043262126.1
length 2983
RNA type mRNA
GC content 0.50
exon number 21
gene id hectd3
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12270887 ~ 12278067 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACACACATGGGCGGATCGCCCTTTAGACCGGTGGAGGTACATAGCTGTCTTGACAGATGCCAGTATCTGTGAGAAAGCTCCGGCGGGAGTAATAATGCTCAGCTGTGTCTAGAGTTTTGTCGTACGGTTAATTTATTACACGGGGTCTCGGTAAAAGCGGACGAACCGGGAAAGAAAGGGAAAGCATATGTGAGGTAATGCTCGCTGACGGCCGAACCGCTCAGTGTTGGTGTTGACACATTCCCAGCTAGCACTCGGCTAGCGCACTCAAACTTGGAGATGTCTCCGGACGACAACCCGCACACCCTCCTGGGAAGGATACGGTTTTTAAACAAGTGCATTGAATGCTTCCGAAAAAGCGAGCCGCTGCCGGAGTCCCTGTGTTACGTGCCGAAAGAGGTTTGCTACAAAATCTGCAAGGACTCGTCGTCTGGCTCCGCTTCCGCGTCCTCGTCCACAGCTGGCAACTCGGGAGGCAAGAGTGTGGTGTCGGTGTGGGAAAACCCACATCAGGCTCCTCACAAGAAATCGTGCAAGTGTAACATCGAGCCCAAAAAAGGCACATGTATACGGACAACAGGGGAAGAGTACTGCAACAGCCATGGCCTGTGGGTCAAAATAAGCAAGCTGGAGGAGTATCGTGCCGGCCTGGACATCGAGGAgggctggatcctggtgtgtaAACACACAGAAGGTGGAGACAGGCTTGTGCCAGTGGAATCTCCCGACACTGTCAGCCGCCAGCAGCAGCTGTTTGGATACGACCATAAGCCGTGTAATAGGTGGGAGCAGGTGGTGGATGTGGAAAACTCCTTGCACATGGGTGCCAAACCCAAGGTGGCGGAGCCGGACGAGGTCGCTGTGCGCAAACTGAGGTATGTTCCTCCTACGTGGACGTTTGAATGTGACGAGGACCTAGTACACTACTTCTATGACCACATTGGGAAAGAAGATGAAAACCTTGGTAGCGTGAAGCAATGCGTGACCAGCATCGATGTGTCTTCTAGTTCGGAGGACCCCAGTGGTGGTGCAAGCTGCCTGACAGATGGAGACACTGAGACTTACTGGGAGAGCGATGGCATGCAGGGACAGCACTGGATCCGACTGCACATGAAGAGAGGCACTGTGGTCAAcaaactgATATTAACAGTGGACTCAACAGATGATAACTACATGCCCAAAAGAGTGACTGTTTATGGTGGAGAGGTTGATAATCTCAAGAAATACAGCGATGTAACAATAGATGACAACTTAATTGGAGAGGTTTGTGTTCTGGAGGACATGACTTCACATTTGCCTGTCATAGAGATCAGGATTGAGGAATGCAGAGATGAGGGAATCGATGTACGGATCAGGGGTCTGAAGATCAAATCGTCCTGCGAGCGTGACTTGGGCCTGAATGCAGACGTATTCCAGTCTCCCAACTTAGTGCGCTACCCGAGATTGGAGGGCACATCCCCTGATGTCCTCTATCGCCGCGCACTGGTCATTCAGAGGTTCATCACACTCCTGGACAGTCTGTTGCCTCATATGGTGCCTGCATGGGACTACAGCCTTGGAACATTCAACCAGATCAAAAGCATAAAGCAGTTCCTGCTATTGTCCAAGCGTCGCTCTGCCCTCATCACCCAGTGCCTGAAGGACTCTGAGACCAGTAAGCCTAACTTCATGCCCCGCCTTTACATCAACCGTCGCCTTGCCATGGAGCACCGTGACAATCCTACTCTGGACTCCACGTGTAAAAATGCTGTCTTCACTCAGGTGTATGAGGGTCTGAAGCCATCTGACAAGTATGAAAAGACTCTGGACTACAGGTGGCCAGCGCGATATGACCAGTGGTGGGAGTGTAAATTCATTGCAGAAGGCATCATTGATCAAGGGGGTGGTTTTCGAGACAGCCTGGCGGACATGTCTGAAGAGCTTTGTCCGAGCTCATCAGAGTGCCCCATGCCACTTCCATTCTTCACACGAACTTCTAACCAGGGGGCTGGAGAGGCCAGAGACTTCTATGTGCCAAATCCTTCATGTCGAGAATTCCACAAGTTTGAGTGGATTGGGCAACTAATGGGTGCAGCTCTTCGCGGAAAAGACTTTTTGGTTCTGGCTTTACCAGGGCTGGTGTGGAAGCAGCTGATTGGAGAATCTGTCAGCTGGACTAAAGACTTTCCTGCAGTTGATTCAGTGCTGGTGAAGTTGTTGGAGGCTATGGAGCATATGGACAAGGAGACATTTGATTTTAAGTTCGGCCAGGAGCTTGTATACACCACACCCCTGAGTGACGGACGGCTGGTGGAGCTGATCCCAGGAGGCAGTGGAGTGGTGGTTCGATATGAAGATCGCATGGAGTTCATACGCCTGGTACAGAAGTCCAGACTCGAAGAGAGCAGGGAACAGATTGCTGCCATGCAGGCAGGACTGGTGAAAGTGGTGCCGCAAGCTGTGCTTGATCTCCTGACATGGCAGGAAGTGGAGAAGAAAGTGTGTGGAGACCCAGAGATCACAGTAGAGGCCCTTAAACGCCTCACACGCTATGAAGACTTAGAACAAACGGATGTCAGAGTGCAGTACTTATGGGAAGCCCTAATGAACTTCACCAATGAGGATCGCAGCAGGTTTTTGAGATTTGTGACTGGAAGAAGTCGTCTTCCTGCTCCGATTTATATCTTCCCGGACAAACAAGGATCTGAAACCACAGATGCACTTCCTCAATCTTCCACATGTTCCAGCACCCTTTATCTACCAAAATACCCAAGTGCTAAAGTTTGTGAAGAGAAGCTTCGCTATGCTGCATATAATTGTGTGGCCATCGATACAGACATGAGCCCTTGGGAGGAGTGACATGATTTTGCCATGTTTACGAATTTTACACACCaggatttttggcataaatgtACTGTAGCCTTCAGCAACGTGCACATGACCATGCCTACACTATTGCCAATTAcatctgtacagtataaataaatatgttataaacAATA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16942 lncRNA upstream 169761 12100875 ~ 12101126 (+) True G11419
TU16629 lncRNA upstream 652024 11614241 ~ 11618863 (+) True G11207
TU16626 lncRNA upstream 657321 11609251 ~ 11613566 (+) True LOC122328936
XR_006247857.1 lncRNA upstream 659800 11610475 ~ 11611087 (+) False LOC122328936
TU16616 lncRNA upstream 769301 11500389 ~ 11501586 (+) False mast3a
TU17037 lncRNA downstream 59600 12337667 ~ 12339049 (+) True G11505
TU17175 lncRNA downstream 267286 12545353 ~ 12545592 (+) True G11590
TU17178 lncRNA downstream 336308 12614375 ~ 12614596 (+) True G11593
TU17180 lncRNA downstream 337928 12615995 ~ 12621414 (+) True G11595
XR_006252588.1 lncRNA downstream 345762 12623829 ~ 12624952 (+) False LOC122358236
XM_043255426.1 mRNA upstream 14000 12204405 ~ 12256887 (+) True efna2a
XM_043255435.1 mRNA upstream 14000 12204409 ~ 12256887 (+) False efna2a
XM_043219545.1 mRNA upstream 69742 12191229 ~ 12201145 (+) True ptbp1a
XM_043223860.1 mRNA upstream 80951 12176229 ~ 12189936 (+) False palm1b
XM_043219222.1 mRNA downstream 665 12278732 ~ 12281207 (+) True rps8a
XM_043220644.1 mRNA downstream 55720 12333787 ~ 12336926 (+) True lrrc42
XM_043220645.1 mRNA downstream 55720 12333787 ~ 12336926 (+) False lrrc42
XM_043220887.1 mRNA downstream 77821 12355888 ~ 12359062 (+) False ttpa
XM_043220880.1 mRNA downstream 77826 12355893 ~ 12359062 (+) True ttpa
XR_006252734.1 other upstream 333297 11908073 ~ 11937590 (+) False pld1a
TU16617 other upstream 765157 11502402 ~ 11505730 (+) False mast3a
TU16613 other upstream 770809 11496360 ~ 11500078 (+) False mast3a
TU16615 other upstream 771950 11496360 ~ 11498937 (+) False mast3a
TU16565 other upstream 929776 11339863 ~ 11341111 (+) False mrpl34
XR_006247874.1 other downstream 1844 12279911 ~ 12280014 (+) True LOC122328992
XR_006247873.1 other downstream 2523 12280590 ~ 12280659 (+) True LOC122328989
XR_006247863.1 other downstream 3305 12281372 ~ 12281504 (+) True LOC122328950
TU17183 other downstream 345756 12623823 ~ 12626387 (+) True LOC122358236
TU17265 other downstream 589916 12867983 ~ 12873145 (+) False rnf152

Expression Profile