RNA id: XM_043262236.1


Basic Information

Item Value
RNA id XM_043262236.1
length 3126
RNA type mRNA
GC content 0.37
exon number 9
gene id LOC122361465
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17709834 ~ 17714790 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACAGATTCTCTTTCCCTATTTCTGCATGCTGTGGTTAGACAGAAAGTTAATTAGGATTAAAGTTAATTCTATTATGTATTTCCACAAACCCAAAACTGCATAATATGAGGACATTGTGTACAGTCATGGCATTTAATCATTCAGCCTAAAaccatggggaaaaaaacaactttacaataaggttgcATTAACTTAAACATaagttaatgcattatttatccaATCACAATgaacaatgtattttatacaatttatgatggctaataaaatacaaaatgttcattgttcattcatgttagATTGCAGTTACTAATGTTAAGAGAactttatttactattaattataTAGAAGTGTTAATTGCTTATGGTACTAATactttattcactaaaaattgtgaataatattattacactgGTGCTGATTTCTCTGTTATTAAGCTTATACTGGTCAATGTTATATTATCTGGAAAGAAGCTCCTAGGagcataaaaatgaaataagaaaaagaaaatacaagaaCAACTGCAAATCGTACTTGCtatatgtgatttatttatttttttgcatgcagaTTAATTCTTATAAAagattacaattataataaaatgaaaagaaataatgaattttAGTATTTTGCACAAATAAGTTTAAATCCTCCTGGCCCACTGATTTTCAGGCAAATTAATAATGTGTTGGGTCTTTTCCCATAATTCGAGGAGTGCAAAGAAAGGAAaacgttatattaaaaaaaaggttcataATACCAGTGTTCTGTAATGTTTAAGTCACATCATGTTTAGGTTGTTTGCTTTTCATAACATACAATGCAGCTTCACAGAAATGGTTGTCCCAGTGGTTCAATCATGCAGCCTTACAAGAAATACTTCAGTGATCAAGCcaaaactatataaaacatgtatacgatttttaggttttagaaagaataaattaaaaaaaaaataatttaaaaaaagactgaaagagagcACTTCCCTCTGGCAACAAATTGTGGTCAATATGTTGTTATAGTAGgccacatatttaaaaaaataaataaatcaataaatattaaagtaaacatAAACACTGTCCATGACCACCATTTTAATGCACGCCGGTGTGTGTAGAACGCGCTGTGCTCGAAAGGTCATGATTGTTTCAAAATACAAGCCTTTACTCTCTTGTCAGTTGACACAATGGCGAGGTACAATCGCTTGTTAAGCAGAAAATTTAATAGagcagttgtttttattttaatagaattagGCACGTCAGAGTTATGTGTTTTACCTGAAAAGgacttattacaaaaataaaacttatgaCTTTTAACTTGAAAAATATGTGGCCAGCTTTTATTTCGTCGCAGTTTGATTACTTGCGGCGAATTCACAGTTGTTTCCTTTTTGCAGGCAGTGAAAGAGTATTGATCCTTACCAAATAACGCGTTTTAAATATTCGTCAATTGGTGCAACTGCATGTTACCTAGAGGTGCTGCTCACCGATTGAGTgctgcttttgtcattttcgCTGAGAACAATCTACACTTTGGACTGCTCGTAGAGAAAAACCAGCAACTACCCTGCACTGACGCCATGGACCATTCTCCCAGCTCTAGTCAGTTGATGGCCAGCAATGTCACGAATAAGACAGACCCACGGTCGCTGAACTCAAGAGTCTTCATCGGTAACTTGAACACTATGCTGGTTACCAAGGCAGATGTTGAAGCCATTTTTAGCAAATATGGCAAGATTGTTGGCTGCTCTGTGCACAAGGGCTATGCCTTCGTCCAGTACGTCAATGAGAGGAACGCAAGGGCGGCTGTATCAGGAGAAGATGGCCGGATGATTGTTGGACAAGTGCTTGATATTAATTTGGCAGGAGAGCCCAAACCTCACAggtcaaaaacaacaaagcgATCGGCCGGAGATATGTACAGCAGTAGCTCTACTTTCGAGCTTGATTATGACTTCCAGAGAGATTACTATGACAGAATGTATTCATACCCTTCCCGTGTGcctcctccaccaccaccacctctCTCACGGGCTGTGATCCCTTCCAAACGTCCGCGGGTCAGTGCGAGTGGGGGAACCAGCCGACGCACCAAGTCCAGCTTTTCCACTTCTTCCAAGAGCAGCCAGCGGACGTCTTCTCGAACTTtgaaaGCAGACGACCTTCAAACGATTAAGAGAGAACTGGCTCAAATTAAACACAAGGTTGACTACCTTCTGGAGAGTCTAGACAGAATTGAGAAAGACCACAGCAAGAAATCTGagggAAAGAGTCTGAAGGCAGAAGTGGGTGAGGCTTCCTCTCTTCAGCATTCCAGCAAaaaggacagagagagggaagagcAAGAGATAAATGATTCTGAGGAGGAGAGAGATttgttagaagaagaagaagaggaggaggaggaggaggaggaagaagagGTTAAAAGCCAGGTAGGAGAGAATGAAGAAGAagagggagaggaggaagagggtgAGCATGAAGAAGGGGAAGATGATGGTGACAGCATAAATGGTGACGACTCATAGGATGTTTTAAACATCGTGGATACGAGACATGCACTCAAAATTCAGCCCTTTCAGTTCTTTTGAAAGGTTGAAGCCAGTCTTTAAAAGATTTGTCTGTTATGATGTAGATGCCTGCACTCTTATAATAACTGACACTACACTTACATCAGTTTCACTGatgtcagtttatttttattgttagcaTGACATCTTTTCAGGCTTTTTGAAGTGTCCCTCAACCTTAAAAGACAAATGTCTGGTTTCAAACAACAGGAACCATTACATTTTCCAGTTCTTCTTAATCATTCTGACTTGAAGCtgaggtttttatttttcactagcgGAATATGTCCATTACGTATTCTCAGAGTGAAACCGGCCTGATTCCTGTTTGCCCTGTGTGTCTTAtgggattttgtttttttctttctgtgaacAAAGATAAAACTTGTATTTTAAAAGGGGGAAACTTGAGTGGCTCCTCTTTTACAGAGAGCCAATAAGCTTCCAGGAAAATCTATGTTTGTATTTACCTGTCTTTTTTATATTACCCTGTTTCAGAATAATTCTACAGGaagatttcaataaaatattaaattaa

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12884 HNRNPC; heterogeneous nuclear ribonucleoprotein C1/C2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19359 lncRNA upstream 10009 17699589 ~ 17699825 (+) True G13121
TU19350 lncRNA upstream 31452 17676072 ~ 17678382 (+) True G13112
XR_006252552.1 lncRNA upstream 97734 17610150 ~ 17612100 (+) True LOC122357958
TU19267 lncRNA upstream 180444 17527177 ~ 17529390 (+) True G13049
TU19420 lncRNA downstream 155488 17870278 ~ 17871416 (+) False nedd8l
TU19432 lncRNA downstream 164769 17879559 ~ 17881219 (+) True G13175
XR_006247112.1 lncRNA downstream 169980 17884770 ~ 17886098 (+) True LOC122324202
TU19764 lncRNA downstream 346780 18061570 ~ 18065663 (+) True G13380
TU19787 lncRNA downstream 389461 18104251 ~ 18190789 (+) True G13392
XM_043262183.1 mRNA upstream 152 17700307 ~ 17709682 (+) True dcaf8
XM_043262190.1 mRNA upstream 152 17700307 ~ 17709682 (+) False dcaf8
XM_043258414.1 mRNA upstream 14923 17689386 ~ 17694911 (+) False si:rp71-1g18.13
XM_043262203.1 mRNA downstream 8980 17723770 ~ 17734149 (+) True casq1a
XM_043262214.1 mRNA downstream 19499 17734289 ~ 17738681 (+) True si:rp71-1g18.1
XM_043220495.1 mRNA downstream 59478 17774268 ~ 17777404 (+) True LOC122325443
XM_043220507.1 mRNA downstream 64549 17779339 ~ 17782364 (+) True LOC122325453
XM_043253688.1 mRNA downstream 69881 17784671 ~ 17793530 (+) True sall2
TU19349 other upstream 101742 17607252 ~ 17608092 (+) True G13111
TU19352 other upstream 141918 17566841 ~ 17567916 (+) True G13114
XR_006252905.1 other upstream 341973 17362245 ~ 17367861 (+) False sppl2
TU18915 other upstream 672537 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 1441037 16267043 ~ 16268797 (+) True G12531
XR_006247303.1 other downstream 64549 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 69389 17784179 ~ 17816764 (+) True G13137
XR_006247815.1 other downstream 2701413 20416203 ~ 20429345 (+) False crlf1a
XR_006247459.1 other downstream 2752478 20467268 ~ 20472616 (+) False gbp2
TU20479 other downstream 2766874 20481664 ~ 20485218 (+) True G13882

Expression Profile